Wall clock time and date at job start Mon Mar 30 2020 02:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47129 * 2 1 4 4 C 1.34232 * 116.99878 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00049 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99727 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47646 * 60.00176 * 6 4 3 8 8 C 1.53004 * 109.47319 * 299.99634 * 6 4 3 9 9 C 1.53009 * 109.46734 * 65.00046 * 8 6 4 10 10 C 1.50703 * 109.46852 * 180.02562 * 6 4 3 11 11 C 1.38323 * 119.91181 * 59.72256 * 10 6 4 12 12 C 1.38060 * 120.09278 * 179.76540 * 11 10 6 13 13 C 1.39082 * 119.90297 * 0.50998 * 12 11 10 14 14 N 1.39300 * 120.08759 * 179.76614 * 13 12 11 15 15 C 1.36846 * 119.99747 * 359.97438 * 14 13 12 16 16 H 1.07999 * 120.00226 * 359.97438 * 15 14 13 17 17 C 1.38797 * 119.99986 * 179.97438 * 15 14 13 18 18 N 1.31594 * 119.99524 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00227 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47320 * 59.99938 * 19 17 15 21 21 H 1.48502 * 109.47299 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46979 * 300.00133 * 19 17 15 23 23 C 1.39080 * 119.82154 * 359.74369 * 13 12 11 24 24 C 1.38051 * 119.91374 * 0.02562 * 23 13 12 25 25 H 1.09004 * 109.47059 * 59.99488 * 1 2 3 26 26 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46930 * 299.99887 * 1 2 3 28 28 H 1.09004 * 109.46930 * 240.00113 * 2 1 3 29 29 H 1.09000 * 109.47312 * 120.00057 * 2 1 3 30 30 H 1.08994 * 109.47474 * 185.00186 * 8 6 4 31 31 H 1.08998 * 109.47288 * 305.00887 * 8 6 4 32 32 H 1.08995 * 109.47004 * 179.97438 * 9 8 6 33 33 H 1.08994 * 109.47255 * 300.00274 * 9 8 6 34 34 H 1.09006 * 109.46414 * 60.00090 * 9 8 6 35 35 H 1.08001 * 119.96017 * 0.02562 * 11 10 6 36 36 H 1.07997 * 120.04531 * 180.25461 * 12 11 10 37 37 H 0.96998 * 120.00019 * 179.97438 * 14 13 12 38 38 H 0.97004 * 119.99485 * 179.97438 * 18 17 15 39 39 H 1.08006 * 120.04398 * 179.97438 * 23 13 12 40 40 H 1.07998 * 119.95280 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5853 3.4691 0.8905 8 6 3.4487 3.6851 -1.2486 9 6 1.9316 3.8745 -1.1865 10 6 5.4257 2.8585 -0.0014 11 6 6.0820 2.2195 -1.0379 12 6 7.4607 2.1492 -1.0454 13 6 8.1894 2.7129 -0.0034 14 7 9.5805 2.6399 -0.0047 15 6 10.2318 2.0127 -1.0318 16 1 9.6674 1.5738 -1.8412 17 6 11.6179 1.9404 -1.0334 18 7 12.3057 2.4757 -0.0473 19 14 12.5071 1.0848 -2.4357 20 1 12.1818 1.7639 -3.7157 21 1 13.9725 1.1448 -2.2026 22 1 12.0738 -0.3339 -2.5041 23 6 7.5255 3.3499 1.0395 24 6 6.1468 3.4199 1.0371 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9349 4.6595 -1.2942 31 1 3.7067 3.1083 -2.1368 32 1 1.5953 4.4075 -2.0758 33 1 1.4454 2.9001 -1.1409 34 1 1.6736 4.4512 -0.2982 35 1 5.5152 1.7785 -1.8446 36 1 7.9725 1.6537 -1.8571 37 1 10.0875 3.0338 0.7225 38 1 13.2744 2.4248 -0.0482 39 1 8.0878 3.7884 1.8507 40 1 5.6306 3.9148 1.8464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163186968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:36 Heat of formation + Delta-G solvation = -90.012125 kcal Electronic energy + Delta-G solvation = -21151.452027 eV Core-core repulsion = 17929.930467 eV Total energy + Delta-G solvation = -3221.521560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.70599 -40.05165 -37.83288 -37.06900 -35.54774 -33.55779 -32.41426 -31.54007 -30.55515 -27.80342 -26.12693 -24.52900 -23.68099 -22.94792 -22.32922 -20.91824 -19.56953 -18.50564 -18.27639 -17.77186 -17.22059 -16.46311 -16.19134 -15.83580 -15.29338 -14.86168 -14.71428 -14.61141 -14.36777 -14.04675 -13.96245 -13.69325 -13.55045 -13.21460 -13.08911 -12.86749 -12.85214 -12.54344 -12.47388 -12.12092 -12.01588 -11.93464 -11.78124 -11.56431 -11.42593 -11.34295 -11.11187 -10.51557 -9.56537 -8.46672 -8.44171 -5.71439 0.84846 0.86020 1.31174 1.38713 1.46247 1.49659 1.85934 2.27714 2.92588 3.40789 3.47940 3.75316 3.92446 4.05407 4.12425 4.18758 4.22767 4.36471 4.36931 4.41983 4.64832 4.69698 4.80120 4.91969 4.97000 4.97893 5.07495 5.18183 5.19765 5.25690 5.32316 5.36426 5.43507 5.53474 5.66810 5.72920 5.82949 5.93959 6.02230 6.45782 6.83590 6.89469 7.53287 7.66686 8.72067 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028136 B = 0.003605 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.935901 B = 7764.606613 C = 8108.881409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.047 3.953 3 O -0.347 6.347 4 C 0.463 3.537 5 O -0.536 6.536 6 C -0.012 4.012 7 H 0.131 0.869 8 C -0.107 4.107 9 C -0.156 4.156 10 C -0.196 4.196 11 C -0.029 4.029 12 C -0.246 4.246 13 C 0.197 3.803 14 N -0.591 5.591 15 C -0.318 4.318 16 H 0.098 0.902 17 C -0.033 4.033 18 N -0.934 5.934 19 Si 0.995 3.005 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.249 4.249 24 C -0.043 4.043 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.391 0.609 38 H 0.274 0.726 39 H 0.114 0.886 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.801 0.996 -0.423 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 O -0.264 6.264 4 C 0.307 3.693 5 O -0.425 6.425 6 C -0.031 4.031 7 H 0.149 0.851 8 C -0.145 4.145 9 C -0.213 4.213 10 C -0.200 4.200 11 C -0.048 4.048 12 C -0.270 4.270 13 C 0.080 3.920 14 N -0.196 5.196 15 C -0.448 4.448 16 H 0.116 0.884 17 C -0.230 4.230 18 N -0.574 5.574 19 Si 0.819 3.181 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.195 1.195 23 C -0.274 4.274 24 C -0.062 4.062 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.225 0.775 38 H 0.083 0.917 39 H 0.132 0.868 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.175 0.584 -0.551 22.189 hybrid contribution 1.507 -0.679 -0.210 1.666 sum -20.668 -0.095 -0.761 20.682 Atomic orbital electron populations 1.21793 0.90069 1.04143 1.03896 1.23241 0.97267 0.80199 1.01927 1.86598 1.23650 1.32498 1.83683 1.24339 0.80524 0.93219 0.71177 1.90691 1.61297 1.44350 1.46130 1.19893 0.90867 0.88846 1.03493 0.85087 1.21525 0.97844 1.00561 0.94560 1.21977 0.93665 1.03034 1.02635 1.18855 0.93124 1.09511 0.98507 1.20478 0.92503 0.94792 0.97046 1.20480 0.94394 1.11033 1.01128 1.18309 0.83858 0.94909 0.94908 1.40958 1.02013 1.53417 1.23236 1.19915 0.90386 1.32226 1.02234 0.88422 1.26117 0.97015 0.98954 1.00959 1.69787 1.08050 1.46224 1.33386 0.84928 0.76933 0.78541 0.77697 1.19074 1.20360 1.19456 1.20482 0.95453 1.10936 1.00495 1.20763 0.92307 0.96396 0.96701 0.90986 0.88715 0.90991 0.92137 0.92118 0.89593 0.92793 0.91721 0.91351 0.91403 0.87637 0.88293 0.77550 0.91730 0.86818 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 10.29 71.98 0.74 -0.92 16 2 C 0.05 0.92 6.19 71.98 0.45 1.36 16 3 O -0.35 -7.92 7.36 -51.44 -0.38 -8.30 16 4 C 0.46 13.29 7.09 71.23 0.51 13.80 16 5 O -0.54 -19.95 14.83 21.97 0.33 -19.62 16 6 C -0.01 -0.31 2.50 -12.29 -0.03 -0.34 16 7 H 0.13 2.61 7.87 -2.39 -0.02 2.59 16 8 C -0.11 -2.27 5.13 30.60 0.16 -2.11 16 9 C -0.16 -2.52 9.55 71.99 0.69 -1.84 16 10 C -0.20 -6.65 4.41 -19.82 -0.09 -6.73 16 11 C -0.03 -1.15 7.96 22.25 0.18 -0.97 16 12 C -0.25 -11.37 9.31 22.43 0.21 -11.16 16 13 C 0.20 9.45 6.62 38.36 0.25 9.70 16 14 N -0.59 -31.53 5.43 -184.29 -1.00 -32.53 16 15 C -0.32 -17.63 9.56 84.04 0.80 -16.83 16 16 H 0.10 5.28 5.68 -2.91 -0.02 5.26 16 17 C -0.03 -1.77 5.50 84.86 0.47 -1.30 16 18 N -0.93 -53.17 13.05 21.65 0.28 -52.88 16 19 Si 1.00 43.05 29.55 68.60 2.03 45.08 16 20 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 23 C -0.25 -10.22 9.90 22.43 0.22 -10.00 16 24 C -0.04 -1.46 9.66 22.25 0.21 -1.25 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 1.25 8.13 -2.38 -0.02 1.23 16 29 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 30 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.05 1.26 7.57 -2.39 -0.02 1.24 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.19 5.46 -2.39 -0.01 1.18 16 34 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.11 3.90 7.56 -2.91 -0.02 3.87 16 36 H 0.10 4.75 5.96 -2.91 -0.02 4.74 16 37 H 0.39 21.25 7.90 -92.71 -0.73 20.52 16 38 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 39 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 40 H 0.14 3.69 7.94 -2.91 -0.02 3.67 16 Total: -1.00 -65.59 332.66 6.33 -59.26 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: 0.31 Total: 37.58 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 4.76 Total: -28.59 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -0.72 Total: -85.41 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.05 Total: -27.92 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -65.59 6.33 -59.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.748 kcal (2) G-P(sol) polarization free energy of solvation -65.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds