Wall clock time and date at job start Mon Mar 30 2020 02:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47537 * 2 1 4 4 C 1.34222 * 117.00425 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00051 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00234 * 179.97438 * 4 3 2 7 7 H 1.08997 * 109.47007 * 300.00133 * 6 4 3 8 8 C 1.53004 * 109.46764 * 59.99962 * 6 4 3 9 9 C 1.53007 * 109.46658 * 185.00129 * 8 6 4 10 10 C 1.50703 * 109.47146 * 179.97438 * 6 4 3 11 11 C 1.38326 * 119.90765 * 120.00272 * 10 6 4 12 12 C 1.38055 * 120.08947 * 179.97438 * 11 10 6 13 13 C 1.39079 * 119.90827 * 0.02562 * 12 11 10 14 14 N 1.39302 * 120.08663 * 180.02562 * 13 12 11 15 15 C 1.36854 * 119.99718 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99907 * 359.97438 * 15 14 13 17 17 C 1.38792 * 120.00070 * 180.02562 * 15 14 13 18 18 N 1.31596 * 119.99549 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00012 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47377 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47134 * 119.99987 * 19 17 15 22 22 H 1.48497 * 109.47155 * 239.99481 * 19 17 15 23 23 C 1.39077 * 119.82228 * 359.97438 * 13 12 11 24 24 C 1.38049 * 119.90826 * 0.02562 * 23 13 12 25 25 H 1.08993 * 109.46912 * 60.00211 * 1 2 3 26 26 H 1.08995 * 109.47274 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47028 * 300.00558 * 1 2 3 28 28 H 1.09003 * 109.47516 * 239.99423 * 2 1 3 29 29 H 1.09005 * 109.47226 * 119.99822 * 2 1 3 30 30 H 1.08996 * 109.47257 * 304.99459 * 8 6 4 31 31 H 1.08991 * 109.47201 * 65.00247 * 8 6 4 32 32 H 1.09003 * 109.46607 * 179.97438 * 9 8 6 33 33 H 1.08996 * 109.47183 * 299.99349 * 9 8 6 34 34 H 1.08991 * 109.47218 * 60.00128 * 9 8 6 35 35 H 1.08005 * 119.95692 * 0.25288 * 11 10 6 36 36 H 1.07998 * 120.04654 * 180.02562 * 12 11 10 37 37 H 0.96996 * 119.99733 * 359.97438 * 14 13 12 38 38 H 0.97005 * 119.99640 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.04774 * 179.97438 * 23 13 12 40 40 H 1.08010 * 119.95373 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9373 -0.0012 7 1 3.5845 3.4692 -0.8911 8 6 3.4497 3.6846 1.2481 9 6 3.9311 5.1357 1.1862 10 6 5.4258 2.8584 -0.0010 11 6 6.1460 3.4206 -1.0396 12 6 7.5248 3.3509 -1.0431 13 6 8.1895 2.7140 -0.0006 14 7 9.5807 2.6420 -0.0001 15 6 10.2329 2.0144 1.0264 16 1 9.6691 1.5752 1.8361 17 6 11.6190 1.9431 1.0273 18 7 12.3060 2.4786 0.0408 19 14 12.5093 1.0870 2.4286 20 1 11.5160 0.5733 3.4057 21 1 13.3063 -0.0447 1.8908 22 1 13.4134 2.0523 3.1037 23 6 7.4617 2.1501 1.0417 24 6 6.0832 2.2241 1.0376 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.3609 3.6648 1.2943 31 1 3.8599 3.2033 2.1357 32 1 3.5950 5.6682 2.0759 33 1 5.0199 5.1556 1.1400 34 1 3.5208 5.6170 0.2985 35 1 5.6292 3.9186 -1.8467 36 1 8.0864 3.7904 -1.8541 37 1 10.0870 3.0361 -0.7275 38 1 13.2747 2.4284 0.0413 39 1 7.9742 1.6542 1.8529 40 1 5.5172 1.7860 1.8465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163186969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:40 Heat of formation + Delta-G solvation = -76.822531 kcal Electronic energy + Delta-G solvation = -21148.625916 eV Core-core repulsion = 17927.676299 eV Total energy + Delta-G solvation = -3220.949617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.42761 -38.50642 -36.57911 -35.62672 -33.99627 -31.80291 -31.59743 -29.87895 -29.00741 -26.65208 -24.49697 -23.30767 -22.33360 -21.61303 -21.01470 -19.46255 -17.77306 -17.23400 -16.61435 -16.38708 -16.13190 -14.99490 -14.62438 -14.39445 -14.01550 -13.69615 -13.55983 -13.20949 -12.98901 -12.71734 -12.42017 -12.27856 -12.23916 -12.00841 -11.83201 -11.62907 -11.54695 -11.20815 -11.16858 -10.82350 -10.56982 -10.49318 -10.36137 -10.26562 -10.07009 -9.91741 -9.66788 -8.67522 -7.90762 -6.65004 -6.54992 -3.72465 2.41342 2.52254 2.54748 2.97091 3.18102 3.19363 3.22339 4.06784 4.66807 4.80377 4.82927 4.92916 5.07452 5.14967 5.18008 5.29817 5.34196 5.39779 5.60034 5.63758 5.69581 5.75188 5.81727 5.92354 5.95429 6.00449 6.12410 6.28607 6.43967 6.50717 6.61584 6.69059 6.94928 7.09249 7.26065 7.45778 7.55277 7.64306 7.78061 8.07548 8.13874 8.77802 9.38065 9.57170 10.62081 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.003768 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.442550 B = 7428.528402 C = 7892.673730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.457 3.543 5 O -0.491 6.491 6 C -0.011 4.011 7 H 0.101 0.899 8 C -0.109 4.109 9 C -0.146 4.146 10 C -0.212 4.212 11 C -0.044 4.044 12 C -0.244 4.244 13 C 0.217 3.783 14 N -0.562 5.562 15 C -0.298 4.298 16 H 0.102 0.898 17 C 0.018 3.982 18 N -0.895 5.895 19 Si 0.931 3.069 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.224 4.224 24 C -0.025 4.025 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.399 0.601 38 H 0.273 0.727 39 H 0.113 0.887 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.751 0.823 0.509 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.283 6.283 4 C 0.299 3.701 5 O -0.376 6.376 6 C -0.030 4.030 7 H 0.118 0.882 8 C -0.147 4.147 9 C -0.204 4.204 10 C -0.216 4.216 11 C -0.064 4.064 12 C -0.269 4.269 13 C 0.095 3.905 14 N -0.163 5.163 15 C -0.428 4.428 16 H 0.120 0.880 17 C -0.185 4.185 18 N -0.532 5.532 19 Si 0.758 3.242 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.248 4.248 24 C -0.045 4.045 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.233 0.767 38 H 0.083 0.917 39 H 0.131 0.869 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.029 0.397 0.632 18.045 hybrid contribution 0.858 -0.554 0.236 1.048 sum -17.172 -0.156 0.869 17.194 Atomic orbital electron populations 1.21785 0.93001 1.02661 1.03323 1.22938 0.95014 0.81101 1.02438 1.86518 1.25516 1.31617 1.84636 1.24272 0.79813 0.93595 0.72413 1.90688 1.60147 1.42968 1.43802 1.19749 0.94005 0.88366 1.00882 0.88152 1.21514 1.00262 0.96430 0.96490 1.21714 1.02794 0.94862 1.00992 1.18305 0.90481 1.12763 1.00070 1.20270 0.93185 0.97168 0.95752 1.20150 0.94093 1.11634 1.01010 1.17879 0.84163 0.94532 0.93920 1.41047 1.01463 1.50884 1.22941 1.19792 0.89743 1.31552 1.01746 0.88000 1.25284 0.96607 0.98059 0.98541 1.69697 1.07988 1.44132 1.31426 0.85773 0.79397 0.78797 0.80274 1.19194 1.20598 1.20607 1.20364 0.93144 1.10128 1.01187 1.20269 0.93446 0.94806 0.95929 0.91617 0.90563 0.91608 0.91507 0.91502 0.91581 0.91585 0.93025 0.91346 0.92941 0.88192 0.87910 0.76674 0.91677 0.86917 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.29 37.16 0.38 -0.76 16 2 C 0.06 0.65 6.19 37.16 0.23 0.88 16 3 O -0.36 -4.87 10.03 -39.24 -0.39 -5.26 16 4 C 0.46 7.20 7.12 36.01 0.26 7.45 16 5 O -0.49 -9.44 14.85 -18.75 -0.28 -9.72 16 6 C -0.01 -0.16 2.48 -92.92 -0.23 -0.39 16 7 H 0.10 1.27 7.87 -51.93 -0.41 0.86 16 8 C -0.11 -1.35 5.26 -26.73 -0.14 -1.49 16 9 C -0.15 -1.70 9.73 37.16 0.36 -1.34 16 10 C -0.21 -3.79 3.38 -104.56 -0.35 -4.14 16 11 C -0.04 -0.81 9.66 -39.62 -0.38 -1.19 16 12 C -0.24 -5.05 9.90 -39.34 -0.39 -5.44 16 13 C 0.22 5.03 6.62 -83.84 -0.55 4.47 16 14 N -0.56 -14.23 5.43 -9.60 -0.05 -14.28 16 15 C -0.30 -7.87 9.56 -15.11 -0.14 -8.02 16 16 H 0.10 2.62 5.68 -52.49 -0.30 2.32 16 17 C 0.02 0.46 5.50 -17.45 -0.10 0.37 16 18 N -0.89 -24.38 13.05 55.49 0.72 -23.66 16 19 Si 0.93 20.34 29.55 -169.99 -5.02 15.32 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 C -0.22 -5.02 9.30 -39.34 -0.37 -5.38 16 24 C -0.03 -0.50 7.86 -39.62 -0.31 -0.81 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 30 H 0.07 0.71 7.99 -51.93 -0.42 0.30 16 31 H 0.07 0.87 7.21 -51.93 -0.37 0.49 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.94 7.38 -51.93 -0.38 0.56 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 1.53 7.94 -52.48 -0.42 1.11 16 36 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 37 H 0.40 10.21 7.90 -40.82 -0.32 9.89 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.11 2.57 5.96 -52.49 -0.31 2.25 16 40 H 0.09 1.77 7.47 -52.48 -0.39 1.37 16 LS Contribution 335.85 15.07 5.06 5.06 Total: -1.00 -29.07 335.85 -7.54 -36.61 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -5.84 Total: 11.72 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -1.74 Total: -15.78 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.67 Total: -37.94 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.67 Total: -14.99 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.07 -7.54 -36.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.209 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds