Wall clock time and date at job start Mon Mar 30 2020 02:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47537 * 2 1 4 4 C 1.34222 * 117.00425 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00051 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00234 * 179.97438 * 4 3 2 7 7 H 1.08997 * 109.47007 * 300.00133 * 6 4 3 8 8 C 1.53004 * 109.46764 * 59.99962 * 6 4 3 9 9 C 1.53007 * 109.46658 * 185.00129 * 8 6 4 10 10 C 1.50703 * 109.47146 * 179.97438 * 6 4 3 11 11 C 1.38326 * 119.90765 * 120.00272 * 10 6 4 12 12 C 1.38055 * 120.08947 * 179.97438 * 11 10 6 13 13 C 1.39079 * 119.90827 * 0.02562 * 12 11 10 14 14 N 1.39302 * 120.08663 * 180.02562 * 13 12 11 15 15 C 1.36854 * 119.99718 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99907 * 359.97438 * 15 14 13 17 17 C 1.38792 * 120.00070 * 180.02562 * 15 14 13 18 18 N 1.31596 * 119.99549 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00012 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47377 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47134 * 119.99987 * 19 17 15 22 22 H 1.48497 * 109.47155 * 239.99481 * 19 17 15 23 23 C 1.39077 * 119.82228 * 359.97438 * 13 12 11 24 24 C 1.38049 * 119.90826 * 0.02562 * 23 13 12 25 25 H 1.08993 * 109.46912 * 60.00211 * 1 2 3 26 26 H 1.08995 * 109.47274 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47028 * 300.00558 * 1 2 3 28 28 H 1.09003 * 109.47516 * 239.99423 * 2 1 3 29 29 H 1.09005 * 109.47226 * 119.99822 * 2 1 3 30 30 H 1.08996 * 109.47257 * 304.99459 * 8 6 4 31 31 H 1.08991 * 109.47201 * 65.00247 * 8 6 4 32 32 H 1.09003 * 109.46607 * 179.97438 * 9 8 6 33 33 H 1.08996 * 109.47183 * 299.99349 * 9 8 6 34 34 H 1.08991 * 109.47218 * 60.00128 * 9 8 6 35 35 H 1.08005 * 119.95692 * 0.25288 * 11 10 6 36 36 H 1.07998 * 120.04654 * 180.02562 * 12 11 10 37 37 H 0.96996 * 119.99733 * 359.97438 * 14 13 12 38 38 H 0.97005 * 119.99640 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.04774 * 179.97438 * 23 13 12 40 40 H 1.08010 * 119.95373 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9373 -0.0012 7 1 3.5845 3.4692 -0.8911 8 6 3.4497 3.6846 1.2481 9 6 3.9311 5.1357 1.1862 10 6 5.4258 2.8584 -0.0010 11 6 6.1460 3.4206 -1.0396 12 6 7.5248 3.3509 -1.0431 13 6 8.1895 2.7140 -0.0006 14 7 9.5807 2.6420 -0.0001 15 6 10.2329 2.0144 1.0264 16 1 9.6691 1.5752 1.8361 17 6 11.6190 1.9431 1.0273 18 7 12.3060 2.4786 0.0408 19 14 12.5093 1.0870 2.4286 20 1 11.5160 0.5733 3.4057 21 1 13.3063 -0.0447 1.8908 22 1 13.4134 2.0523 3.1037 23 6 7.4617 2.1501 1.0417 24 6 6.0832 2.2241 1.0376 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.3609 3.6648 1.2943 31 1 3.8599 3.2033 2.1357 32 1 3.5950 5.6682 2.0759 33 1 5.0199 5.1556 1.1400 34 1 3.5208 5.6170 0.2985 35 1 5.6292 3.9186 -1.8467 36 1 8.0864 3.7904 -1.8541 37 1 10.0870 3.0361 -0.7275 38 1 13.2747 2.4284 0.0413 39 1 7.9742 1.6542 1.8529 40 1 5.5172 1.7860 1.8465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163186969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:39 Heat of formation + Delta-G solvation = -91.838931 kcal Electronic energy + Delta-G solvation = -21149.277076 eV Core-core repulsion = 17927.676299 eV Total energy + Delta-G solvation = -3221.600777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.68176 -40.08367 -37.90128 -37.08278 -35.47497 -33.45805 -32.50218 -31.53586 -30.36175 -28.13622 -26.26743 -24.21369 -23.78858 -22.83761 -22.45957 -20.84377 -19.56484 -18.51648 -18.29694 -17.49657 -17.36667 -16.51686 -16.20505 -15.95156 -15.31654 -14.97844 -14.70089 -14.60452 -14.34580 -14.00427 -13.94853 -13.65978 -13.52238 -13.23322 -12.99748 -12.89056 -12.78555 -12.46633 -12.42646 -12.42034 -12.09029 -11.95105 -11.74389 -11.52842 -11.44013 -11.35893 -11.17166 -10.51538 -9.55440 -8.46526 -8.42769 -5.71064 0.85741 0.86865 1.28666 1.38807 1.43498 1.52268 1.85128 2.27508 2.93281 3.41788 3.48601 3.71155 3.93420 4.03734 4.12246 4.17396 4.25620 4.36060 4.37416 4.41679 4.62089 4.71014 4.79999 4.88475 4.96465 4.98193 5.04945 5.18257 5.18560 5.23867 5.31472 5.37518 5.44080 5.53866 5.56126 5.74278 5.83897 5.94892 6.03332 6.46597 6.84206 6.87018 7.54209 7.67425 8.72734 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.003768 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.442550 B = 7428.528402 C = 7892.673730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.357 6.357 4 C 0.462 3.538 5 O -0.534 6.534 6 C -0.013 4.013 7 H 0.132 0.868 8 C -0.105 4.105 9 C -0.144 4.144 10 C -0.187 4.187 11 C -0.043 4.043 12 C -0.249 4.249 13 C 0.197 3.803 14 N -0.592 5.592 15 C -0.315 4.315 16 H 0.098 0.902 17 C -0.034 4.034 18 N -0.935 5.935 19 Si 0.995 3.005 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.276 1.276 23 C -0.245 4.245 24 C -0.030 4.030 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.143 0.857 36 H 0.113 0.887 37 H 0.391 0.609 38 H 0.273 0.727 39 H 0.098 0.902 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.330 1.405 0.411 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.274 6.274 4 C 0.306 3.694 5 O -0.423 6.423 6 C -0.032 4.032 7 H 0.150 0.850 8 C -0.142 4.142 9 C -0.202 4.202 10 C -0.191 4.191 11 C -0.061 4.061 12 C -0.273 4.273 13 C 0.081 3.919 14 N -0.198 5.198 15 C -0.445 4.445 16 H 0.115 0.885 17 C -0.231 4.231 18 N -0.575 5.575 19 Si 0.819 3.181 20 H -0.186 1.186 21 H -0.204 1.204 22 H -0.201 1.201 23 C -0.269 4.269 24 C -0.049 4.049 25 H 0.090 0.910 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.160 0.840 36 H 0.131 0.869 37 H 0.224 0.776 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.714 0.990 0.545 21.744 hybrid contribution 1.514 -0.705 0.206 1.683 sum -20.200 0.285 0.751 20.216 Atomic orbital electron populations 1.21798 0.90033 1.04234 1.03898 1.23247 0.97287 0.79769 1.02049 1.86503 1.23895 1.33111 1.83874 1.24370 0.80406 0.93367 0.71239 1.90694 1.61232 1.44344 1.46028 1.19884 0.91187 0.88533 1.03582 0.84987 1.21509 1.01752 0.96344 0.94602 1.21700 1.01065 0.94606 1.02788 1.18764 0.92932 1.09149 0.98227 1.20741 0.92264 0.96414 0.96711 1.20472 0.95452 1.10900 1.00464 1.18295 0.83834 0.94898 0.94888 1.40966 1.02024 1.53523 1.23280 1.19975 0.90343 1.31975 1.02160 0.88456 1.26104 0.97044 0.99034 1.00947 1.69800 1.07993 1.46386 1.33337 0.84810 0.78116 0.77677 0.77487 1.18612 1.20392 1.20137 1.20461 0.94406 1.10974 1.01088 1.20459 0.92470 0.94923 0.97059 0.91008 0.88529 0.91012 0.91982 0.91998 0.89067 0.92765 0.91535 0.93959 0.91030 0.83951 0.86898 0.77580 0.91780 0.88432 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 10.29 71.98 0.74 -0.96 16 2 C 0.05 0.99 6.19 71.98 0.45 1.43 16 3 O -0.36 -8.40 10.03 -51.34 -0.51 -8.91 16 4 C 0.46 13.31 7.12 71.24 0.51 13.82 16 5 O -0.53 -19.86 14.85 21.95 0.33 -19.53 16 6 C -0.01 -0.33 2.48 -12.28 -0.03 -0.36 16 7 H 0.13 2.60 7.87 -2.39 -0.02 2.58 16 8 C -0.10 -2.19 5.26 30.60 0.16 -2.03 16 9 C -0.14 -2.82 9.73 71.98 0.70 -2.12 16 10 C -0.19 -6.25 3.38 -19.82 -0.07 -6.32 16 11 C -0.04 -1.43 9.66 22.25 0.21 -1.22 16 12 C -0.25 -10.13 9.90 22.43 0.22 -9.91 16 13 C 0.20 9.43 6.62 38.36 0.25 9.68 16 14 N -0.59 -31.55 5.43 -184.29 -1.00 -32.56 16 15 C -0.31 -17.45 9.56 84.04 0.80 -16.65 16 16 H 0.10 5.29 5.68 -2.91 -0.02 5.27 16 17 C -0.03 -1.82 5.50 84.86 0.47 -1.36 16 18 N -0.93 -53.22 13.05 21.65 0.28 -52.94 16 19 Si 1.00 43.19 29.55 68.60 2.03 45.21 16 20 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 23 C -0.24 -11.29 9.30 22.43 0.21 -11.08 16 24 C -0.03 -1.18 7.86 22.25 0.17 -1.00 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 29 H 0.06 1.28 8.13 -2.38 -0.02 1.26 16 30 H 0.09 1.53 7.99 -2.39 -0.02 1.51 16 31 H 0.05 1.28 7.21 -2.39 -0.02 1.26 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.04 1.05 7.38 -2.39 -0.02 1.03 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.14 3.64 7.94 -2.91 -0.02 3.62 16 36 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 37 H 0.39 21.22 7.90 -92.71 -0.73 20.49 16 38 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 39 H 0.10 4.70 5.96 -2.91 -0.02 4.68 16 40 H 0.10 3.85 7.47 -2.91 -0.02 3.83 16 Total: -1.00 -65.81 335.85 6.23 -59.58 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: 0.31 Total: 37.20 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: 4.80 Total: -28.06 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -0.72 Total: -85.49 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.19 Total: -28.45 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -65.81 6.23 -59.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.254 kcal (2) G-P(sol) polarization free energy of solvation -65.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds