Wall clock time and date at job start Mon Mar 30 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46883 * 2 1 4 4 C 1.52997 * 109.47427 * 239.99915 * 2 1 3 5 5 O 1.45196 * 109.47014 * 119.99723 * 2 1 3 6 6 C 1.34234 * 116.99938 * 60.00164 * 5 2 1 7 7 O 1.20822 * 119.99973 * 0.02562 * 6 5 2 8 8 C 1.50700 * 120.00068 * 179.97438 * 6 5 2 9 9 C 1.50697 * 109.47266 * 180.02562 * 8 6 5 10 10 C 1.38353 * 119.95382 * 269.72664 * 9 8 6 11 11 C 1.38305 * 120.18159 * 179.72263 * 10 9 8 12 12 C 1.38075 * 120.08778 * 0.54928 * 11 10 9 13 13 C 1.39064 * 119.90890 * 359.72682 * 12 11 10 14 14 N 1.39294 * 120.08851 * 180.02562 * 13 12 11 15 15 C 1.36850 * 120.00435 * 359.97125 * 14 13 12 16 16 H 1.08004 * 119.99531 * 0.02562 * 15 14 13 17 17 C 1.38793 * 120.00324 * 180.02562 * 15 14 13 18 18 N 1.31585 * 119.99928 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99740 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47303 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46970 * 120.00194 * 19 17 15 22 22 H 1.48512 * 109.46817 * 239.99757 * 19 17 15 23 23 C 1.38025 * 119.95599 * 89.99885 * 9 8 6 24 24 H 1.08998 * 109.47018 * 300.00366 * 1 2 3 25 25 H 1.08994 * 109.46696 * 60.00313 * 1 2 3 26 26 H 1.08995 * 109.46934 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47084 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47659 * 299.99940 * 3 2 1 29 29 H 1.08998 * 109.47592 * 59.99986 * 3 2 1 30 30 H 1.09006 * 109.47130 * 300.00224 * 4 2 1 31 31 H 1.09003 * 109.47043 * 59.99678 * 4 2 1 32 32 H 1.08999 * 109.47232 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.46932 * 300.00373 * 8 6 5 34 34 H 1.08997 * 109.47392 * 59.99712 * 8 6 5 35 35 H 1.08008 * 119.90592 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.95627 * 180.25305 * 11 10 9 37 37 H 1.07999 * 120.04515 * 179.74601 * 12 11 10 38 38 H 0.97003 * 119.99851 * 179.97438 * 14 13 12 39 39 H 0.97005 * 119.99737 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.04932 * 359.97406 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9567 -2.5028 0.5079 8 6 2.1182 -2.7437 2.5437 9 6 1.5799 -4.1495 2.4751 10 6 0.3569 -4.4496 3.0483 11 6 -0.1443 -5.7370 2.9832 12 6 0.5799 -6.7309 2.3553 13 6 1.8122 -6.4346 1.7829 14 7 2.5457 -7.4343 1.1480 15 6 2.0542 -8.7100 1.0874 16 1 1.0973 -8.9417 1.5315 17 6 2.7853 -9.7061 0.4553 18 7 3.9513 -9.4240 -0.0853 19 14 2.1139 -11.4473 0.3720 20 1 0.7942 -11.5020 1.0507 21 1 1.9575 -11.8501 -1.0488 22 1 3.0567 -12.3742 1.0484 23 6 2.3101 -5.1373 1.8456 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6768 -1.7490 -1.2492 31 1 1.6768 -0.2074 -2.1392 32 1 3.1301 -0.7208 -1.2494 33 1 3.2078 -2.7725 2.5591 34 1 1.7549 -2.2588 3.4497 35 1 -0.2098 -3.6755 3.5444 36 1 -1.1012 -5.9663 3.4283 37 1 0.1897 -7.7368 2.3084 38 1 3.4049 -7.2261 0.7489 39 1 4.4621 -10.1201 -0.5274 40 1 3.2664 -4.9032 1.4019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187410.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:41 Heat of formation + Delta-G solvation = -84.961965 kcal Electronic energy + Delta-G solvation = -21181.790181 eV Core-core repulsion = 17960.487612 eV Total energy + Delta-G solvation = -3221.302569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.81956 -40.09996 -38.06010 -36.81233 -35.06057 -33.95809 -33.01563 -30.17776 -28.46766 -28.36807 -28.26194 -26.46538 -23.82407 -22.91601 -21.57222 -20.50336 -19.41688 -18.13503 -18.04463 -17.25705 -17.18921 -16.66921 -16.42021 -15.80320 -15.34353 -15.10420 -14.81141 -14.71689 -14.38229 -14.02324 -13.79475 -13.50929 -13.31362 -13.28029 -12.93985 -12.89224 -12.87612 -12.82002 -12.44524 -12.34996 -12.15517 -12.13449 -11.90568 -11.84486 -11.49691 -11.34289 -10.92030 -10.54786 -9.48899 -8.47279 -8.44440 -5.70093 0.67980 0.97047 1.33343 1.39860 1.46201 1.53536 1.87852 2.28748 2.94926 3.41733 3.47204 3.73242 3.81367 3.81881 3.96822 4.04560 4.18328 4.44796 4.55345 4.59804 4.61416 4.68308 4.77167 4.79761 4.84056 4.90314 4.92041 4.96475 5.14718 5.22983 5.27878 5.34151 5.35664 5.39403 5.63114 5.77397 5.84737 5.95615 6.01330 6.47735 6.85337 6.95067 7.55748 7.68533 8.75078 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026968 B = 0.003668 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.018260 B = 7631.667778 C = 8146.145501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.106 3.894 3 C -0.134 4.134 4 C -0.183 4.183 5 O -0.355 6.355 6 C 0.464 3.536 7 O -0.520 6.520 8 C -0.067 4.067 9 C -0.022 4.022 10 C -0.216 4.216 11 C -0.064 4.064 12 C -0.241 4.241 13 C 0.192 3.808 14 N -0.596 5.596 15 C -0.314 4.314 16 H 0.101 0.899 17 C -0.036 4.036 18 N -0.937 5.937 19 Si 0.997 3.003 20 H -0.259 1.259 21 H -0.280 1.280 22 H -0.277 1.277 23 C -0.233 4.233 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.125 0.875 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.104 0.896 38 H 0.388 0.612 39 H 0.272 0.728 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 19.715 3.286 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.070 3.930 3 C -0.190 4.190 4 C -0.240 4.240 5 O -0.273 6.273 6 C 0.308 3.692 7 O -0.409 6.409 8 C -0.104 4.104 9 C -0.023 4.023 10 C -0.237 4.237 11 C -0.082 4.082 12 C -0.265 4.265 13 C 0.076 3.924 14 N -0.202 5.202 15 C -0.443 4.443 16 H 0.119 0.881 17 C -0.234 4.234 18 N -0.578 5.578 19 Si 0.821 3.179 20 H -0.183 1.183 21 H -0.206 1.206 22 H -0.203 1.203 23 C -0.257 4.257 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.143 0.857 34 H 0.160 0.840 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.122 0.878 38 H 0.221 0.779 39 H 0.081 0.919 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.411 19.189 2.846 19.894 hybrid contribution 0.345 -1.274 -0.762 1.524 sum -4.065 17.915 2.084 18.489 Atomic orbital electron populations 1.22447 0.94033 1.03336 1.03850 1.22454 0.94653 0.93508 0.82385 1.21852 1.02352 0.90546 1.04286 1.22477 1.01721 1.01837 0.97997 1.86536 1.70033 1.24988 1.45745 1.23874 0.77113 0.80562 0.87645 1.90632 1.36009 1.70275 1.43955 1.20400 1.04081 0.90398 0.95506 1.18984 0.94492 0.92714 0.96120 1.20641 0.97327 0.96951 1.08816 1.20951 0.98568 0.92645 0.96077 1.20622 0.96653 1.00065 1.09180 1.18251 0.92265 0.88782 0.93068 1.40935 1.19774 1.06661 1.52869 1.20002 1.04991 0.85294 1.34047 0.88134 1.26130 0.96117 1.04150 0.96964 1.69807 1.13792 1.35725 1.38475 0.84786 0.78478 0.76716 0.77945 1.18301 1.20556 1.20293 1.20263 1.02446 0.92164 1.10854 0.91170 0.89362 0.92635 0.91263 0.88487 0.90737 0.92927 0.89233 0.91888 0.85677 0.83962 0.85023 0.84837 0.87829 0.77857 0.91889 0.87897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.73 8.37 71.98 0.60 -3.13 16 2 C 0.11 2.23 1.13 -10.79 -0.01 2.22 16 3 C -0.13 -1.83 8.85 71.98 0.64 -1.19 16 4 C -0.18 -4.23 8.37 71.98 0.60 -3.62 16 5 O -0.36 -8.80 9.89 -51.46 -0.51 -9.31 16 6 C 0.46 13.49 7.26 71.24 0.52 14.01 16 7 O -0.52 -18.91 11.53 21.98 0.25 -18.66 16 8 C -0.07 -1.70 5.94 29.10 0.17 -1.53 16 9 C -0.02 -0.77 4.37 -19.89 -0.09 -0.86 16 10 C -0.22 -7.30 9.70 22.31 0.22 -7.08 16 11 C -0.06 -2.35 10.04 22.25 0.22 -2.13 16 12 C -0.24 -10.78 9.31 22.43 0.21 -10.57 16 13 C 0.19 9.25 6.62 38.36 0.25 9.51 16 14 N -0.60 -32.05 5.43 -184.28 -1.00 -33.06 16 15 C -0.31 -17.34 9.56 84.04 0.80 -16.54 16 16 H 0.10 5.37 5.68 -2.91 -0.02 5.35 16 17 C -0.04 -1.97 5.50 84.86 0.47 -1.50 16 18 N -0.94 -53.73 13.05 21.65 0.28 -53.45 16 19 Si 1.00 43.02 29.55 68.60 2.03 45.05 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 23 C -0.23 -9.81 9.55 22.43 0.21 -9.60 16 24 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 1.53 5.89 -2.39 -0.01 1.52 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 1.60 5.89 -2.38 -0.01 1.59 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.13 2.75 8.08 -2.38 -0.02 2.73 16 34 H 0.14 2.62 8.08 -2.39 -0.02 2.60 16 35 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 37 H 0.10 4.76 5.96 -2.91 -0.02 4.74 16 38 H 0.39 21.51 7.90 -92.71 -0.73 20.78 16 39 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 40 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -66.40 332.30 6.18 -60.21 By element: Atomic # 1 Polarization: 40.92 SS G_CDS: 0.31 Total: 41.23 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: 4.82 Total: -32.02 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -0.72 Total: -86.51 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.26 Total: -27.97 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -66.40 6.18 -60.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187410.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.749 kcal (2) G-P(sol) polarization free energy of solvation -66.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds