Wall clock time and date at job start Mon Mar 30 2020 02:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47403 * 2 1 4 4 H 1.09003 * 109.46851 * 303.11251 * 3 2 1 5 5 C 1.52996 * 109.47483 * 183.11030 * 3 2 1 6 6 C 1.50696 * 109.46905 * 175.00172 * 5 3 2 7 7 C 1.38252 * 119.93017 * 269.97374 * 6 5 3 8 8 C 1.38242 * 120.14482 * 179.79578 * 7 6 5 9 9 C 1.38544 * 120.02748 * 0.43112 * 8 7 6 10 10 C 1.39261 * 119.82721 * 359.57631 * 9 8 7 11 11 C 1.38239 * 119.92923 * 90.00342 * 6 5 3 12 12 O 1.36502 * 108.64253 * 180.24612 * 10 9 8 13 13 C 1.43988 * 105.48176 * 342.71713 * 12 10 9 14 14 O 1.36497 * 131.53325 * 179.87471 * 9 8 7 15 15 N 1.46903 * 109.46606 * 63.10893 * 3 2 1 16 16 C 1.46896 * 111.00083 * 54.69079 * 15 3 2 17 17 C 1.50693 * 109.47280 * 174.25026 * 16 15 3 18 18 H 1.08007 * 119.99971 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00179 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99879 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00102 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46774 * 90.00006 * 21 19 17 23 23 H 1.48495 * 109.47259 * 209.99696 * 21 19 17 24 24 H 1.48500 * 109.47261 * 330.00456 * 21 19 17 25 25 H 1.09005 * 109.47405 * 54.72480 * 1 2 3 26 26 H 1.08998 * 109.47169 * 174.71990 * 1 2 3 27 27 H 1.08998 * 109.47420 * 294.71973 * 1 2 3 28 28 H 1.09004 * 109.46910 * 240.00365 * 2 1 3 29 29 H 1.09002 * 109.47546 * 120.00665 * 2 1 3 30 30 H 1.09003 * 109.46918 * 54.99936 * 5 3 2 31 31 H 1.09005 * 109.47042 * 295.00397 * 5 3 2 32 32 H 1.08004 * 119.92794 * 0.05209 * 7 6 5 33 33 H 1.07999 * 119.98393 * 180.33568 * 8 7 6 34 34 H 1.07996 * 119.98337 * 359.97438 * 11 6 5 35 35 H 1.08995 * 110.57084 * 268.55061 * 13 12 10 36 36 H 1.08998 * 110.56919 * 145.67591 * 13 12 10 37 37 H 1.00899 * 110.99986 * 290.73248 * 15 3 2 38 38 H 1.09006 * 109.47207 * 294.25059 * 16 15 3 39 39 H 1.08999 * 109.47097 * 54.24360 * 16 15 3 40 40 H 0.97004 * 119.99989 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6318 1.9722 -0.8608 5 6 3.5680 1.4432 -0.0783 6 6 4.0639 2.8609 -0.2020 7 6 4.2303 3.4268 -1.4523 8 6 4.6809 4.7283 -1.5708 9 6 4.9756 5.4661 -0.4358 10 6 4.8081 4.8960 0.8237 11 6 4.3520 3.5925 0.9350 12 8 5.1566 5.8167 1.7693 13 6 5.9258 6.8132 1.0703 14 8 5.4293 6.7439 -0.2794 15 7 1.6126 2.1129 1.2353 16 6 2.0387 1.3556 2.4197 17 6 1.7086 2.1404 3.6632 18 1 1.2305 3.1054 3.5817 19 6 2.0169 1.6264 4.9049 20 7 2.5986 0.4511 5.0041 21 14 1.6084 2.5995 6.4462 22 1 0.2445 2.2406 6.9111 23 1 2.5941 2.2791 7.5096 24 1 1.6617 4.0523 6.1431 25 1 -0.3634 0.5935 -0.8390 26 1 -0.3633 -1.0233 -0.0946 27 1 -0.3634 0.4297 0.9335 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8875 0.8693 -0.9481 31 1 3.9783 0.9922 0.8253 32 1 4.0038 2.8522 -2.3383 33 1 4.8048 5.1697 -2.5487 34 1 4.2212 3.1478 1.9105 35 1 6.9875 6.5684 1.1008 36 1 5.7473 7.8015 1.4939 37 1 0.6144 2.2602 1.2400 38 1 1.5182 0.3982 2.4455 39 1 3.1140 1.1834 2.3734 40 1 2.8158 0.0897 5.8777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170406255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:01 Heat of formation + Delta-G solvation = -45.679242 kcal Electronic energy + Delta-G solvation = -21849.251860 eV Core-core repulsion = 18629.652718 eV Total energy + Delta-G solvation = -3219.599142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.84418 -38.48897 -36.68559 -35.98563 -32.92180 -31.55187 -30.73791 -30.05089 -27.85392 -26.20392 -25.37484 -23.51704 -22.64335 -22.29097 -21.32432 -18.91174 -17.62213 -17.19082 -17.10124 -16.66648 -15.88769 -15.03114 -14.52093 -14.38114 -14.13421 -14.13067 -13.59732 -13.44551 -13.34313 -12.84769 -12.69650 -12.49584 -12.15773 -12.09915 -11.67894 -11.49934 -11.26251 -10.97991 -10.85134 -10.71484 -10.64903 -10.37754 -10.23939 -10.15193 -9.63449 -9.13528 -8.43567 -8.38118 -7.69169 -7.18931 -6.00648 -4.01055 1.48176 1.63590 3.03246 3.33480 3.40014 3.45708 3.69570 3.93784 4.46372 4.79626 4.83781 4.96933 5.07786 5.25220 5.34786 5.35640 5.43304 5.49828 5.54763 5.57271 5.65565 5.90919 5.91736 6.05907 6.15532 6.19724 6.29869 6.37475 6.43191 6.50120 6.60015 6.67797 6.74048 6.77614 7.06299 7.30516 7.47354 7.47488 7.84369 8.17728 8.46149 8.66122 9.08937 9.63955 11.09915 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012664 B = 0.006626 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.430314 B = 4224.888418 C = 6052.457865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.161 4.161 3 C 0.094 3.906 4 H 0.066 0.934 5 C -0.074 4.074 6 C -0.043 4.043 7 C -0.118 4.118 8 C -0.107 4.107 9 C 0.012 3.988 10 C 0.031 3.969 11 C -0.060 4.060 12 O -0.306 6.306 13 C 0.213 3.787 14 O -0.317 6.317 15 N -0.680 5.680 16 C 0.190 3.810 17 C -0.509 4.509 18 H 0.060 0.940 19 C 0.057 3.943 20 N -0.899 5.899 21 Si 0.893 3.107 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.148 0.852 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.329 0.671 38 H -0.008 1.008 39 H 0.030 0.970 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.491 5.007 -12.866 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.200 4.200 3 C -0.017 4.017 4 H 0.085 0.915 5 C -0.112 4.112 6 C -0.043 4.043 7 C -0.137 4.137 8 C -0.126 4.126 9 C -0.032 4.032 10 C -0.013 4.013 11 C -0.079 4.079 12 O -0.222 6.222 13 C 0.101 3.899 14 O -0.234 6.234 15 N -0.310 5.310 16 C 0.064 3.936 17 C -0.548 4.548 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.539 5.539 21 Si 0.721 3.279 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.165 0.835 35 H 0.095 0.905 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.010 0.990 39 H 0.048 0.952 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.077 5.529 -12.610 14.675 hybrid contribution -0.704 -0.058 1.101 1.308 sum 4.372 5.471 -11.509 13.472 Atomic orbital electron populations 1.21716 0.96188 1.00952 1.01754 1.22281 0.96142 0.99389 1.02225 1.21494 0.93493 0.91938 0.94785 0.91540 1.20716 0.95898 0.91744 1.02811 1.19459 0.96839 0.96596 0.91401 1.20735 1.01419 0.94068 0.97446 1.19859 1.03781 0.93457 0.95492 1.19754 1.04320 0.83982 0.95113 1.19828 1.03569 0.92168 0.85700 1.20231 0.97664 0.88875 1.01126 1.87416 1.69127 1.33474 1.32213 1.25515 0.94907 0.94170 0.75354 1.87283 1.77562 1.26624 1.31904 1.60775 1.18699 1.50017 1.01520 1.19623 0.96080 0.91779 0.86142 1.21207 1.38919 1.04315 0.90321 0.92163 1.24942 0.95412 0.95007 0.99068 1.69948 1.42377 1.17393 1.24136 0.86576 0.77931 0.80582 0.82830 1.20846 1.21336 1.19786 0.93346 0.93367 0.92212 0.92834 0.90673 0.91324 0.89800 0.85209 0.85596 0.83469 0.90498 0.85753 0.85380 0.99049 0.95215 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.52 37.15 0.35 -1.81 16 2 C -0.16 -2.49 4.99 -26.73 -0.13 -2.62 16 3 C 0.09 1.52 2.54 -67.71 -0.17 1.35 16 4 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 5 C -0.07 -1.15 4.73 -27.89 -0.13 -1.28 16 6 C -0.04 -0.68 4.95 -104.62 -0.52 -1.20 16 7 C -0.12 -1.62 9.69 -39.57 -0.38 -2.00 16 8 C -0.11 -1.50 10.06 -39.47 -0.40 -1.90 16 9 C 0.01 0.20 7.15 -39.09 -0.28 -0.08 16 10 C 0.03 0.57 7.15 -39.09 -0.28 0.29 16 11 C -0.06 -1.13 9.31 -39.47 -0.37 -1.49 16 12 O -0.31 -5.41 11.40 -45.70 -0.52 -5.93 16 13 C 0.21 2.74 8.89 101.05 0.90 3.64 16 14 O -0.32 -4.83 11.40 -45.68 -0.52 -5.35 16 15 N -0.68 -13.59 5.63 -107.99 -0.61 -14.20 16 16 C 0.19 4.62 4.42 -4.98 -0.02 4.60 16 17 C -0.51 -14.02 9.36 -34.44 -0.32 -14.35 16 18 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 21 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.98 7.23 -51.93 -0.38 0.61 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.37 6.28 -51.93 -0.33 1.04 16 30 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.08 1.49 6.15 -51.93 -0.32 1.17 16 32 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 33 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.15 3.15 7.58 -52.49 -0.40 2.76 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.33 6.48 7.67 -39.29 -0.30 6.17 16 38 H -0.01 -0.21 6.51 -51.93 -0.34 -0.55 16 39 H 0.03 0.77 5.75 -51.93 -0.30 0.47 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 327.14 15.07 4.93 4.93 Total: -1.00 -30.62 327.14 -8.56 -39.18 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.70 Total: 5.47 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -1.85 Total: -15.36 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.13 Total: -39.75 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -1.04 Total: -11.28 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.62 -8.56 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170406255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.498 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds