Wall clock time and date at job start Mon Mar 30 2020 02:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47403 * 2 1 4 4 H 1.09003 * 109.46851 * 303.11251 * 3 2 1 5 5 C 1.52996 * 109.47483 * 183.11030 * 3 2 1 6 6 C 1.50696 * 109.46905 * 175.00172 * 5 3 2 7 7 C 1.38252 * 119.93017 * 269.97374 * 6 5 3 8 8 C 1.38242 * 120.14482 * 179.79578 * 7 6 5 9 9 C 1.38544 * 120.02748 * 0.43112 * 8 7 6 10 10 C 1.39261 * 119.82721 * 359.57631 * 9 8 7 11 11 C 1.38239 * 119.92923 * 90.00342 * 6 5 3 12 12 O 1.36502 * 108.64253 * 180.24612 * 10 9 8 13 13 C 1.43988 * 105.48176 * 342.71713 * 12 10 9 14 14 O 1.36497 * 131.53325 * 179.87471 * 9 8 7 15 15 N 1.46903 * 109.46606 * 63.10893 * 3 2 1 16 16 C 1.46896 * 111.00083 * 54.69079 * 15 3 2 17 17 C 1.50693 * 109.47280 * 174.25026 * 16 15 3 18 18 H 1.08007 * 119.99971 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00179 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99879 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00102 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46774 * 90.00006 * 21 19 17 23 23 H 1.48495 * 109.47259 * 209.99696 * 21 19 17 24 24 H 1.48500 * 109.47261 * 330.00456 * 21 19 17 25 25 H 1.09005 * 109.47405 * 54.72480 * 1 2 3 26 26 H 1.08998 * 109.47169 * 174.71990 * 1 2 3 27 27 H 1.08998 * 109.47420 * 294.71973 * 1 2 3 28 28 H 1.09004 * 109.46910 * 240.00365 * 2 1 3 29 29 H 1.09002 * 109.47546 * 120.00665 * 2 1 3 30 30 H 1.09003 * 109.46918 * 54.99936 * 5 3 2 31 31 H 1.09005 * 109.47042 * 295.00397 * 5 3 2 32 32 H 1.08004 * 119.92794 * 0.05209 * 7 6 5 33 33 H 1.07999 * 119.98393 * 180.33568 * 8 7 6 34 34 H 1.07996 * 119.98337 * 359.97438 * 11 6 5 35 35 H 1.08995 * 110.57084 * 268.55061 * 13 12 10 36 36 H 1.08998 * 110.56919 * 145.67591 * 13 12 10 37 37 H 1.00899 * 110.99986 * 290.73248 * 15 3 2 38 38 H 1.09006 * 109.47207 * 294.25059 * 16 15 3 39 39 H 1.08999 * 109.47097 * 54.24360 * 16 15 3 40 40 H 0.97004 * 119.99989 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6318 1.9722 -0.8608 5 6 3.5680 1.4432 -0.0783 6 6 4.0639 2.8609 -0.2020 7 6 4.2303 3.4268 -1.4523 8 6 4.6809 4.7283 -1.5708 9 6 4.9756 5.4661 -0.4358 10 6 4.8081 4.8960 0.8237 11 6 4.3520 3.5925 0.9350 12 8 5.1566 5.8167 1.7693 13 6 5.9258 6.8132 1.0703 14 8 5.4293 6.7439 -0.2794 15 7 1.6126 2.1129 1.2353 16 6 2.0387 1.3556 2.4197 17 6 1.7086 2.1404 3.6632 18 1 1.2305 3.1054 3.5817 19 6 2.0169 1.6264 4.9049 20 7 2.5986 0.4511 5.0041 21 14 1.6084 2.5995 6.4462 22 1 0.2445 2.2406 6.9111 23 1 2.5941 2.2791 7.5096 24 1 1.6617 4.0523 6.1431 25 1 -0.3634 0.5935 -0.8390 26 1 -0.3633 -1.0233 -0.0946 27 1 -0.3634 0.4297 0.9335 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8875 0.8693 -0.9481 31 1 3.9783 0.9922 0.8253 32 1 4.0038 2.8522 -2.3383 33 1 4.8048 5.1697 -2.5487 34 1 4.2212 3.1478 1.9105 35 1 6.9875 6.5684 1.1008 36 1 5.7473 7.8015 1.4939 37 1 0.6144 2.2602 1.2400 38 1 1.5182 0.3982 2.4455 39 1 3.1140 1.1834 2.3734 40 1 2.8158 0.0897 5.8777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170406255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:01 Heat of formation + Delta-G solvation = -65.464485 kcal Electronic energy + Delta-G solvation = -21850.109813 eV Core-core repulsion = 18629.652718 eV Total energy + Delta-G solvation = -3220.457095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.01881 -39.79694 -38.04452 -37.18913 -34.97643 -32.76014 -32.40452 -31.26828 -29.25737 -27.94558 -26.54253 -24.85750 -24.22128 -23.78183 -22.53254 -20.35767 -18.81345 -18.76867 -18.35011 -18.18511 -17.07711 -16.80254 -16.33309 -15.85339 -15.35406 -15.33188 -14.92605 -14.83131 -14.61603 -14.25323 -14.06833 -13.91200 -13.64334 -13.44625 -13.30021 -12.83641 -12.80721 -12.69239 -12.42224 -12.26414 -12.08439 -11.87521 -11.60901 -11.46023 -11.28414 -11.14750 -10.58699 -9.64488 -8.96257 -8.80018 -8.18910 -6.26463 0.26746 0.40913 1.36212 1.37808 1.48973 1.90699 2.39607 2.62609 2.71724 3.14141 3.63015 3.68695 3.85353 3.92283 4.07859 4.19206 4.23421 4.32809 4.36510 4.40462 4.45629 4.63355 4.71113 4.83294 4.91415 4.94292 5.08121 5.17208 5.19777 5.24828 5.28675 5.36619 5.41986 5.43731 5.57580 5.60362 5.68187 5.82108 6.14714 6.26512 6.62415 6.86757 7.00222 7.43373 8.91205 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012664 B = 0.006626 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.430314 B = 4224.888418 C = 6052.457865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.155 4.155 3 C 0.093 3.907 4 H 0.094 0.906 5 C -0.070 4.070 6 C -0.050 4.050 7 C -0.100 4.100 8 C -0.098 4.098 9 C 0.006 3.994 10 C 0.004 3.996 11 C -0.089 4.089 12 O -0.340 6.340 13 C 0.205 3.795 14 O -0.322 6.322 15 N -0.682 5.682 16 C 0.216 3.784 17 C -0.526 4.526 18 H 0.051 0.949 19 C 0.006 3.994 20 N -0.930 5.930 21 Si 0.956 3.044 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.273 1.273 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.030 0.970 28 H 0.086 0.914 29 H 0.037 0.963 30 H 0.109 0.891 31 H 0.047 0.953 32 H 0.175 0.825 33 H 0.163 0.837 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.157 0.843 37 H 0.330 0.670 38 H -0.031 1.031 39 H 0.007 0.993 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.328 5.897 -15.667 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.195 4.195 3 C -0.017 4.017 4 H 0.112 0.888 5 C -0.108 4.108 6 C -0.050 4.050 7 C -0.118 4.118 8 C -0.116 4.116 9 C -0.038 4.038 10 C -0.040 4.040 11 C -0.108 4.108 12 O -0.257 6.257 13 C 0.094 3.906 14 O -0.239 6.239 15 N -0.312 5.312 16 C 0.088 3.912 17 C -0.564 4.564 18 H 0.070 0.930 19 C -0.192 4.192 20 N -0.571 5.571 21 Si 0.781 3.219 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.198 1.198 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.105 0.895 29 H 0.056 0.944 30 H 0.127 0.873 31 H 0.066 0.934 32 H 0.192 0.808 33 H 0.180 0.820 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.174 0.826 37 H 0.148 0.852 38 H -0.013 1.013 39 H 0.025 0.975 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.910 6.426 -15.424 17.415 hybrid contribution -0.609 -0.301 1.906 2.024 sum 4.301 6.125 -13.517 15.451 Atomic orbital electron populations 1.21689 0.95413 1.01937 1.01231 1.22203 0.96788 0.98534 1.01925 1.21666 0.94087 0.92505 0.93417 0.88758 1.20714 0.95227 0.91983 1.02858 1.19567 0.97132 0.96529 0.91759 1.21149 0.99156 0.94058 0.97445 1.20368 1.01759 0.93273 0.96241 1.20050 1.04461 0.84382 0.94947 1.20010 1.04745 0.92266 0.87001 1.20054 1.00514 0.89978 1.00222 1.87353 1.70147 1.34454 1.33745 1.26028 0.95586 0.94692 0.74311 1.87251 1.77685 1.26112 1.32883 1.60644 1.18713 1.50064 1.01782 1.19130 0.94250 0.90637 0.87154 1.21571 1.38623 1.04187 0.92047 0.93045 1.25745 0.95324 0.95963 1.02178 1.70059 1.43371 1.18797 1.24888 0.85586 0.78173 0.78960 0.79140 1.19636 1.20769 1.19807 0.90910 0.92245 0.95036 0.89518 0.94450 0.87306 0.93394 0.80813 0.81982 0.88145 0.88128 0.82595 0.85240 1.01350 0.97485 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.52 71.98 0.69 -3.34 16 2 C -0.16 -4.62 4.99 30.59 0.15 -4.47 16 3 C 0.09 2.92 2.54 44.91 0.11 3.04 16 4 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 5 C -0.07 -2.13 4.73 29.85 0.14 -1.99 16 6 C -0.05 -1.55 4.95 -19.86 -0.10 -1.65 16 7 C -0.10 -2.36 9.69 22.27 0.22 -2.14 16 8 C -0.10 -2.40 10.06 22.34 0.22 -2.17 16 9 C 0.01 0.17 7.15 22.59 0.16 0.33 16 10 C 0.00 0.13 7.15 22.59 0.16 0.29 16 11 C -0.09 -3.49 9.31 22.34 0.21 -3.28 16 12 O -0.34 -12.44 11.40 -76.08 -0.87 -13.31 16 13 C 0.20 5.09 8.89 113.37 1.01 6.10 16 14 O -0.32 -9.30 11.40 -76.01 -0.87 -10.17 16 15 N -0.68 -28.06 5.63 -495.58 -2.79 -30.85 16 16 C 0.22 11.13 4.42 85.56 0.38 11.51 16 17 C -0.53 -30.39 9.36 25.60 0.24 -30.15 16 18 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 19 C 0.01 0.34 5.46 84.66 0.46 0.81 16 20 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 21 Si 0.96 46.05 29.54 68.60 2.03 48.08 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 25 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 27 H 0.03 1.03 7.23 -2.39 -0.02 1.01 16 28 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.04 1.40 6.28 -2.39 -0.01 1.38 16 30 H 0.11 2.39 8.08 -2.39 -0.02 2.37 16 31 H 0.05 1.80 6.15 -2.38 -0.01 1.79 16 32 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 33 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.10 4.80 7.58 -2.91 -0.02 4.78 16 35 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.16 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.33 13.28 7.67 -89.69 -0.69 12.59 16 38 H -0.03 -1.72 6.51 -2.38 -0.02 -1.74 16 39 H 0.01 0.40 5.75 -2.39 -0.01 0.39 16 40 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -71.11 327.14 2.20 -68.90 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.36 Total: 20.77 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 4.05 Total: -27.12 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -2.50 Total: -87.15 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -1.73 Total: -23.48 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -71.11 2.20 -68.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170406255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.440 kcal (2) G-P(sol) polarization free energy of solvation -71.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds