Wall clock time and date at job start Mon Mar 30 2020 02:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47114 * 2 1 4 4 H 1.09007 * 109.47192 * 305.08757 * 3 2 1 5 5 C 1.53007 * 109.46677 * 65.08208 * 3 2 1 6 6 C 1.50701 * 109.46976 * 185.00131 * 5 3 2 7 7 C 1.38256 * 119.92972 * 269.98360 * 6 5 3 8 8 C 1.38236 * 120.13991 * 179.79451 * 7 6 5 9 9 C 1.38545 * 120.03578 * 0.42554 * 8 7 6 10 10 C 1.39265 * 119.82106 * 359.57093 * 9 8 7 11 11 C 1.38235 * 119.92745 * 89.99881 * 6 5 3 12 12 O 1.36505 * 108.64044 * 180.24998 * 10 9 8 13 13 C 1.43983 * 105.48194 * 342.71957 * 12 10 9 14 14 O 1.36496 * 131.53721 * 179.88312 * 9 8 7 15 15 N 1.46893 * 109.47676 * 185.08146 * 3 2 1 16 16 C 1.46904 * 110.99748 * 83.10715 * 15 3 2 17 17 C 1.50703 * 109.47135 * 178.09400 * 16 15 3 18 18 H 1.08000 * 119.99611 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00081 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00213 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00148 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47358 * 90.00155 * 21 19 17 23 23 H 1.48500 * 109.47281 * 210.00605 * 21 19 17 24 24 H 1.48507 * 109.46625 * 329.99955 * 21 19 17 25 25 H 1.08995 * 109.47275 * 294.09163 * 1 2 3 26 26 H 1.09004 * 109.47118 * 54.09645 * 1 2 3 27 27 H 1.09003 * 109.46751 * 174.09362 * 1 2 3 28 28 H 1.08999 * 109.47614 * 240.00157 * 2 1 3 29 29 H 1.08997 * 109.47568 * 119.99983 * 2 1 3 30 30 H 1.08992 * 109.47013 * 65.00738 * 5 3 2 31 31 H 1.09000 * 109.47109 * 305.00222 * 5 3 2 32 32 H 1.08000 * 119.92871 * 0.03861 * 7 6 5 33 33 H 1.08004 * 119.98243 * 180.32490 * 8 7 6 34 34 H 1.08002 * 119.99062 * 359.97438 * 11 6 5 35 35 H 1.09000 * 110.57303 * 268.54950 * 13 12 10 36 36 H 1.09000 * 110.57111 * 145.67574 * 13 12 10 37 37 H 1.00895 * 111.00515 * 207.06069 * 15 3 2 38 38 H 1.09005 * 109.47274 * 298.09018 * 16 15 3 39 39 H 1.08994 * 109.47423 * 58.09334 * 16 15 3 40 40 H 0.97000 * 120.00236 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6041 1.9820 -0.8410 5 6 1.6369 2.1259 1.3083 6 6 2.0309 3.5796 1.2578 7 6 3.2783 3.9722 1.7064 8 6 3.6458 5.3039 1.6581 9 6 2.7606 6.2503 1.1679 10 6 1.5041 5.8548 0.7160 11 6 1.1441 4.5177 0.7634 12 8 0.8289 6.9590 0.2822 13 6 1.5260 8.0835 0.8504 14 8 2.8728 7.6023 1.0173 15 7 3.5037 1.4445 -0.1227 16 6 3.9144 1.3209 -1.5277 17 6 5.4178 1.3736 -1.6181 18 1 6.0090 1.4879 -0.7216 19 6 6.0384 1.2769 -2.8455 20 7 7.3503 1.3233 -2.9245 21 14 5.0158 1.0798 -4.3963 22 1 4.6872 2.4195 -4.9461 23 1 5.7870 0.3071 -5.4030 24 1 3.7602 0.3559 -4.0725 25 1 -0.3633 0.4195 0.9381 26 1 -0.3633 0.6027 -0.8324 27 1 -0.3633 -1.0223 -0.1058 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.1436 1.6410 2.1426 31 1 0.5581 2.0462 1.4425 32 1 3.9686 3.2363 2.0916 33 1 4.6229 5.6071 2.0043 34 1 0.1703 4.2083 0.4136 35 1 1.0941 8.3549 1.8136 36 1 1.5046 8.9324 0.1670 37 1 3.9009 2.2708 0.2987 38 1 3.5595 0.3711 -1.9278 39 1 3.4868 2.1407 -2.1047 40 1 7.7869 1.2557 -3.7880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170406256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:04 Heat of formation + Delta-G solvation = -67.722513 kcal Electronic energy + Delta-G solvation = -21564.342057 eV Core-core repulsion = 18343.787047 eV Total energy + Delta-G solvation = -3220.555010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.14978 -39.93084 -37.80760 -37.30670 -35.20540 -33.44549 -32.59472 -31.43738 -29.55313 -27.85743 -26.57932 -24.95810 -24.05521 -23.34783 -22.80005 -20.92775 -19.03037 -18.90332 -18.52771 -18.34005 -17.21096 -16.72649 -16.30115 -15.88048 -15.64538 -15.48418 -15.04626 -14.87653 -14.68277 -14.38484 -14.29891 -14.05452 -14.01494 -13.60137 -13.45901 -12.95899 -12.79329 -12.66165 -12.31588 -12.19953 -11.95407 -11.94263 -11.73759 -11.69199 -11.32799 -11.24497 -10.82220 -9.85810 -9.13478 -9.00623 -8.30999 -6.34099 0.08669 0.19600 1.31313 1.32477 1.43863 1.76875 2.31899 2.50490 2.51641 3.03269 3.46729 3.51631 3.75832 3.78983 4.02498 4.05090 4.11112 4.21913 4.27898 4.37672 4.45924 4.51716 4.62483 4.72863 4.77795 4.88466 4.94399 5.02894 5.07220 5.08683 5.16272 5.25094 5.29871 5.38119 5.47226 5.50595 5.54103 5.62099 6.00694 6.10859 6.58769 6.68901 6.82039 7.30867 8.85608 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013595 B = 0.005564 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.023149 B = 5031.353974 C = 6169.690748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C 0.085 3.915 4 H 0.025 0.975 5 C -0.070 4.070 6 C -0.075 4.075 7 C -0.110 4.110 8 C -0.104 4.104 9 C 0.006 3.994 10 C 0.016 3.984 11 C -0.102 4.102 12 O -0.325 6.325 13 C 0.204 3.796 14 O -0.328 6.328 15 N -0.684 5.684 16 C 0.177 3.823 17 C -0.524 4.524 18 H 0.041 0.959 19 C 0.011 3.989 20 N -0.945 5.945 21 Si 0.943 3.057 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.250 1.250 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.108 0.892 36 H 0.158 0.842 37 H 0.337 0.663 38 H 0.025 0.975 39 H -0.028 1.028 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.783 8.190 10.503 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.149 4.149 3 C -0.025 4.025 4 H 0.043 0.957 5 C -0.107 4.107 6 C -0.075 4.075 7 C -0.128 4.128 8 C -0.122 4.122 9 C -0.038 4.038 10 C -0.028 4.028 11 C -0.121 4.121 12 O -0.242 6.242 13 C 0.094 3.906 14 O -0.245 6.245 15 N -0.316 5.316 16 C 0.048 3.952 17 C -0.562 4.562 18 H 0.059 0.941 19 C -0.187 4.187 20 N -0.586 5.586 21 Si 0.767 3.233 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.174 1.174 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.126 0.874 36 H 0.176 0.824 37 H 0.157 0.843 38 H 0.043 0.957 39 H -0.010 1.010 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.589 7.703 10.374 21.825 hybrid contribution 0.222 1.230 -1.357 1.845 sum -17.367 8.933 9.017 21.511 Atomic orbital electron populations 1.21797 0.93789 1.02227 1.02522 1.21492 0.96482 0.95076 1.01862 1.21684 0.87947 0.96475 0.96382 0.95680 1.20830 1.03666 0.88489 0.97690 1.19872 0.93462 0.96191 0.97991 1.21159 0.96614 0.94707 1.00299 1.20341 0.99879 0.91195 1.00826 1.20016 0.95867 0.84327 1.03557 1.19972 0.91496 0.90461 1.00899 1.20163 1.01900 0.87681 1.02346 1.87304 1.52895 1.14230 1.69771 1.26120 0.73600 0.89471 1.01452 1.87316 1.30458 1.17469 1.89274 1.60567 1.08381 1.45724 1.16969 1.19735 0.93907 0.94502 0.87037 1.21343 0.91638 1.49455 0.93759 0.94066 1.25800 0.95925 0.94435 1.02529 1.70038 1.10035 1.52302 1.26200 0.85776 0.79631 0.78936 0.78992 1.19736 1.20276 1.17424 0.90608 0.93179 0.91920 0.94279 0.91006 0.88701 0.87262 0.83179 0.83636 0.83194 0.87432 0.82448 0.84280 0.95675 1.01009 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.53 71.98 0.69 -2.20 16 2 C -0.11 -3.05 5.64 30.59 0.17 -2.88 16 3 C 0.08 2.61 2.10 44.92 0.09 2.70 16 4 H 0.03 0.84 7.80 -2.38 -0.02 0.82 16 5 C -0.07 -1.60 4.85 29.85 0.14 -1.45 16 6 C -0.07 -1.94 4.83 -19.86 -0.10 -2.03 16 7 C -0.11 -2.98 8.01 22.27 0.18 -2.80 16 8 C -0.10 -2.92 10.06 22.34 0.22 -2.70 16 9 C 0.01 0.19 7.15 22.59 0.16 0.35 16 10 C 0.02 0.45 7.15 22.59 0.16 0.62 16 11 C -0.10 -2.66 9.71 22.34 0.22 -2.44 16 12 O -0.33 -8.48 11.40 -76.10 -0.87 -9.35 16 13 C 0.20 3.88 8.89 113.37 1.01 4.89 16 14 O -0.33 -8.95 11.40 -76.00 -0.87 -9.82 16 15 N -0.68 -27.61 6.30 -495.55 -3.12 -30.74 16 16 C 0.18 8.72 4.32 85.56 0.37 9.09 16 17 C -0.52 -30.94 9.85 25.60 0.25 -30.68 16 18 H 0.04 2.67 8.06 -2.91 -0.02 2.64 16 19 C 0.01 0.64 5.47 84.65 0.46 1.11 16 20 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 21 Si 0.94 45.46 27.47 68.60 1.88 47.35 16 22 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 25 H 0.08 1.17 6.75 -2.39 -0.02 1.15 16 26 H 0.05 1.00 8.14 -2.38 -0.02 0.99 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.04 1.27 7.25 -2.39 -0.02 1.25 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.09 2.04 8.08 -2.39 -0.02 2.02 16 31 H 0.11 1.87 6.42 -2.39 -0.02 1.86 16 32 H 0.15 3.82 7.57 -2.91 -0.02 3.80 16 33 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 34 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.16 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.34 13.42 5.51 -89.70 -0.49 12.93 16 38 H 0.03 1.25 6.34 -2.38 -0.02 1.24 16 39 H -0.03 -1.38 7.44 -2.39 -0.02 -1.40 16 40 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -72.09 325.21 1.85 -70.23 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.49 Total: 20.41 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 4.04 Total: -28.43 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -2.83 Total: -90.38 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -1.73 Total: -19.17 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.35 kcal Total: -72.09 1.85 -70.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170406256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.512 kcal (2) G-P(sol) polarization free energy of solvation -72.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds