Wall clock time and date at job start Mon Mar 30 2020 02:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47462 * 2 1 4 4 H 1.08995 * 109.47018 * 305.00192 * 3 2 1 5 5 C 1.52999 * 109.46908 * 184.99837 * 3 2 1 6 6 C 1.50703 * 109.46906 * 175.00000 * 5 3 2 7 7 C 1.38254 * 119.93197 * 269.98188 * 6 5 3 8 8 C 1.38229 * 120.14350 * 179.79409 * 7 6 5 9 9 C 1.38548 * 120.03395 * 0.42185 * 8 7 6 10 10 C 1.39269 * 119.82326 * 359.58004 * 9 8 7 11 11 C 1.38238 * 119.92643 * 90.00124 * 6 5 3 12 12 O 1.36499 * 108.64169 * 180.24222 * 10 9 8 13 13 C 1.43982 * 105.48332 * 342.71981 * 12 10 9 14 14 O 1.36500 * 131.53956 * 179.87533 * 9 8 7 15 15 N 1.46495 * 109.46779 * 65.00056 * 3 2 1 16 16 C 1.46502 * 120.00409 * 59.99988 * 15 3 2 17 17 C 1.36935 * 120.00131 * 239.99894 * 15 3 2 18 18 H 1.08007 * 120.00102 * 20.33894 * 17 15 3 19 19 C 1.38810 * 120.00440 * 200.34001 * 17 15 3 20 20 N 1.31623 * 119.99807 * 14.94261 * 19 17 15 21 21 Si 1.86803 * 120.00327 * 194.94170 * 19 17 15 22 22 H 1.48498 * 109.46814 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46999 * 119.99923 * 21 19 17 24 24 H 1.48491 * 109.47342 * 239.99887 * 21 19 17 25 25 H 1.09005 * 109.46812 * 59.99630 * 1 2 3 26 26 H 1.08995 * 109.47495 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47136 * 299.99919 * 1 2 3 28 28 H 1.09002 * 109.47136 * 240.00081 * 2 1 3 29 29 H 1.08996 * 109.47026 * 120.00476 * 2 1 3 30 30 H 1.08996 * 109.47058 * 55.00261 * 5 3 2 31 31 H 1.08997 * 109.47259 * 294.99995 * 5 3 2 32 32 H 1.08003 * 119.92365 * 0.03807 * 7 6 5 33 33 H 1.08001 * 119.98742 * 180.33108 * 8 7 6 34 34 H 1.08003 * 119.98460 * 359.97438 * 11 6 5 35 35 H 1.08997 * 110.56782 * 268.54751 * 13 12 10 36 36 H 1.08998 * 110.57270 * 145.67951 * 13 12 10 37 37 H 1.08998 * 109.47263 * 94.78169 * 16 15 3 38 38 H 1.09000 * 109.47537 * 214.78350 * 16 15 3 39 39 H 1.08996 * 109.46702 * 334.78606 * 16 15 3 40 40 H 0.96997 * 119.99772 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 6 4.0571 2.8632 -0.2492 7 6 4.1846 3.4429 -1.4978 8 6 4.6317 4.7456 -1.6160 9 6 4.9616 5.4710 -0.4826 10 6 4.8332 4.8870 0.7752 11 6 4.3806 3.5823 0.8863 12 8 5.2112 5.7973 1.7195 13 6 5.9585 6.8015 1.0080 14 8 5.4202 6.7471 -0.3263 15 7 1.6525 2.0974 1.2518 16 6 2.1139 1.5589 2.5337 17 6 0.8590 3.2130 1.2238 18 1 0.2557 3.4249 0.3533 19 6 0.8298 4.0717 2.3140 20 7 1.7612 3.9907 3.2406 21 14 -0.5311 5.3423 2.4662 22 1 -1.4470 5.2283 1.3030 23 1 -1.2915 5.1053 3.7196 24 1 0.0631 6.7028 2.4976 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 3.8570 0.8799 -1.0113 31 1 4.0029 0.9834 0.7597 32 1 3.9306 2.8780 -2.3826 33 1 4.7252 5.1977 -2.5923 34 1 4.2799 3.1269 1.8604 35 1 7.0205 6.5565 1.0028 36 1 5.7935 7.7851 1.4477 37 1 3.0206 2.0797 2.8414 38 1 1.3395 1.7012 3.2876 39 1 2.3248 0.4949 2.4260 40 1 1.7406 4.5905 4.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170451249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:07 Heat of formation + Delta-G solvation = -15.918062 kcal Electronic energy + Delta-G solvation = -22702.802603 eV Core-core repulsion = 19484.494002 eV Total energy + Delta-G solvation = -3218.308601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.56233 -38.13198 -36.25683 -35.70944 -32.96603 -31.21556 -29.96569 -29.75676 -27.43805 -25.93155 -25.31800 -23.62926 -22.35076 -22.29789 -21.03710 -18.83871 -17.36875 -16.93174 -16.90129 -16.64165 -15.63158 -15.11490 -14.16897 -13.90897 -13.83679 -13.77365 -13.31179 -13.15377 -12.92269 -12.61973 -12.43354 -12.21933 -11.98879 -11.85938 -11.36042 -11.20668 -10.86382 -10.81148 -10.61467 -10.41948 -10.32385 -10.24261 -10.06977 -9.91179 -9.64199 -9.60743 -8.42903 -8.06012 -7.39737 -6.63710 -5.61598 -3.01362 1.79303 1.95607 3.29916 3.44343 3.52574 3.53506 3.96242 4.22879 4.59386 4.98086 5.14226 5.19285 5.37109 5.48776 5.55516 5.60727 5.71559 5.79329 5.81161 5.94436 5.96831 6.18568 6.21146 6.33171 6.40484 6.53208 6.61080 6.62903 6.69843 6.77108 6.84561 6.98474 7.02676 7.04898 7.07011 7.32266 7.46315 7.73915 7.83768 7.93218 8.49704 9.35528 9.99481 10.47415 11.43513 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.008422 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.482447 B = 3323.722289 C = 4522.339658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.134 4.134 3 C 0.179 3.821 4 H 0.063 0.937 5 C -0.094 4.094 6 C -0.044 4.044 7 C -0.121 4.121 8 C -0.109 4.109 9 C 0.007 3.993 10 C 0.041 3.959 11 C -0.046 4.046 12 O -0.303 6.303 13 C 0.213 3.787 14 O -0.318 6.318 15 N -0.586 5.586 16 C 0.162 3.838 17 C -0.243 4.243 18 H 0.064 0.936 19 C 0.006 3.994 20 N -0.899 5.899 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.294 1.294 25 H 0.043 0.957 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.142 0.858 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.027 0.973 38 H 0.041 0.959 39 H -0.002 1.002 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.321 -2.747 -6.832 10.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.174 4.174 3 C 0.070 3.930 4 H 0.081 0.919 5 C -0.133 4.133 6 C -0.045 4.045 7 C -0.139 4.139 8 C -0.128 4.128 9 C -0.037 4.037 10 C -0.003 4.003 11 C -0.064 4.064 12 O -0.219 6.219 13 C 0.100 3.900 14 O -0.235 6.235 15 N -0.308 5.308 16 C 0.017 3.983 17 C -0.373 4.373 18 H 0.082 0.918 19 C -0.192 4.192 20 N -0.544 5.544 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.221 1.221 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.159 0.841 35 H 0.091 0.909 36 H 0.138 0.862 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.283 -2.433 -6.561 10.100 hybrid contribution -0.655 1.229 0.372 1.442 sum 6.628 -1.204 -6.189 9.148 Atomic orbital electron populations 1.21597 0.96008 0.99384 1.02580 1.21976 0.96398 0.98742 1.00253 1.20451 0.90055 0.91697 0.90766 0.91874 1.21229 0.99522 0.91409 1.01187 1.19436 0.96701 0.96815 0.91503 1.20638 1.01793 0.94041 0.97405 1.19781 1.04082 0.93650 0.95270 1.19728 1.04882 0.83828 0.95267 1.19743 1.03048 0.92150 0.85387 1.20060 0.96823 0.89129 1.00394 1.87421 1.69418 1.33646 1.31411 1.25449 0.94576 0.94067 0.75905 1.87257 1.76215 1.26932 1.33132 1.43868 1.57979 1.29562 0.99343 1.20782 0.99092 0.91153 0.87255 1.19118 1.16501 0.99638 1.01995 0.91791 1.24807 0.97839 0.97592 0.98956 1.70036 1.32097 1.39515 1.12788 0.86365 0.82208 0.81758 0.77346 1.20585 1.21914 1.22090 0.93817 0.94727 0.91277 0.93431 0.92483 0.92079 0.91486 0.85563 0.85967 0.84069 0.90916 0.86155 0.95467 0.93994 0.98388 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.80 37.15 0.36 -1.92 16 2 C -0.13 -2.19 5.36 -26.73 -0.14 -2.33 16 3 C 0.18 3.38 2.09 -67.93 -0.14 3.24 16 4 H 0.06 1.26 7.85 -51.93 -0.41 0.85 16 5 C -0.09 -1.59 4.78 -27.88 -0.13 -1.72 16 6 C -0.04 -0.82 4.95 -104.61 -0.52 -1.34 16 7 C -0.12 -2.02 9.69 -39.58 -0.38 -2.40 16 8 C -0.11 -1.88 10.06 -39.47 -0.40 -2.27 16 9 C 0.01 0.13 7.15 -39.08 -0.28 -0.15 16 10 C 0.04 0.87 7.15 -39.08 -0.28 0.59 16 11 C -0.05 -0.97 9.31 -39.47 -0.37 -1.34 16 12 O -0.30 -6.27 11.40 -45.69 -0.52 -6.79 16 13 C 0.21 3.30 8.89 101.05 0.90 4.20 16 14 O -0.32 -5.81 11.40 -45.69 -0.52 -6.33 16 15 N -0.59 -13.41 1.65 -173.49 -0.29 -13.70 16 16 C 0.16 3.73 7.90 59.85 0.47 4.20 16 17 C -0.24 -6.39 9.61 -15.06 -0.14 -6.53 16 18 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 19 C 0.01 0.18 5.06 -17.43 -0.09 0.09 16 20 N -0.90 -25.34 10.67 55.49 0.59 -24.75 16 21 Si 0.89 22.37 29.58 -169.99 -5.03 17.35 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 1.34 7.75 -51.93 -0.40 0.93 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.95 6.49 -51.93 -0.34 0.61 16 30 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 31 H 0.07 1.15 7.45 -51.93 -0.39 0.77 16 32 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 33 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.14 3.29 6.20 -52.48 -0.33 2.96 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.12 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.03 0.67 5.58 -51.93 -0.29 0.39 16 38 H 0.04 1.07 7.19 -51.93 -0.37 0.70 16 39 H 0.00 -0.05 6.36 -51.93 -0.33 -0.38 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 323.71 15.07 4.88 4.88 Total: -1.00 -29.88 323.71 -7.80 -37.69 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -5.78 Total: -0.63 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.14 Total: -7.70 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.31 Total: -38.45 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -1.04 Total: -13.12 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.88 -7.80 -37.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170451249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.768 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds