Wall clock time and date at job start Mon Mar 30 2020 02:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47462 * 2 1 4 4 H 1.08995 * 109.47018 * 305.00192 * 3 2 1 5 5 C 1.52999 * 109.46908 * 184.99837 * 3 2 1 6 6 C 1.50703 * 109.46906 * 175.00000 * 5 3 2 7 7 C 1.38254 * 119.93197 * 269.98188 * 6 5 3 8 8 C 1.38229 * 120.14350 * 179.79409 * 7 6 5 9 9 C 1.38548 * 120.03395 * 0.42185 * 8 7 6 10 10 C 1.39269 * 119.82326 * 359.58004 * 9 8 7 11 11 C 1.38238 * 119.92643 * 90.00124 * 6 5 3 12 12 O 1.36499 * 108.64169 * 180.24222 * 10 9 8 13 13 C 1.43982 * 105.48332 * 342.71981 * 12 10 9 14 14 O 1.36500 * 131.53956 * 179.87533 * 9 8 7 15 15 N 1.46495 * 109.46779 * 65.00056 * 3 2 1 16 16 C 1.46502 * 120.00409 * 59.99988 * 15 3 2 17 17 C 1.36935 * 120.00131 * 239.99894 * 15 3 2 18 18 H 1.08007 * 120.00102 * 20.33894 * 17 15 3 19 19 C 1.38810 * 120.00440 * 200.34001 * 17 15 3 20 20 N 1.31623 * 119.99807 * 14.94261 * 19 17 15 21 21 Si 1.86803 * 120.00327 * 194.94170 * 19 17 15 22 22 H 1.48498 * 109.46814 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46999 * 119.99923 * 21 19 17 24 24 H 1.48491 * 109.47342 * 239.99887 * 21 19 17 25 25 H 1.09005 * 109.46812 * 59.99630 * 1 2 3 26 26 H 1.08995 * 109.47495 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47136 * 299.99919 * 1 2 3 28 28 H 1.09002 * 109.47136 * 240.00081 * 2 1 3 29 29 H 1.08996 * 109.47026 * 120.00476 * 2 1 3 30 30 H 1.08996 * 109.47058 * 55.00261 * 5 3 2 31 31 H 1.08997 * 109.47259 * 294.99995 * 5 3 2 32 32 H 1.08003 * 119.92365 * 0.03807 * 7 6 5 33 33 H 1.08001 * 119.98742 * 180.33108 * 8 7 6 34 34 H 1.08003 * 119.98460 * 359.97438 * 11 6 5 35 35 H 1.08997 * 110.56782 * 268.54751 * 13 12 10 36 36 H 1.08998 * 110.57270 * 145.67951 * 13 12 10 37 37 H 1.08998 * 109.47263 * 94.78169 * 16 15 3 38 38 H 1.09000 * 109.47537 * 214.78350 * 16 15 3 39 39 H 1.08996 * 109.46702 * 334.78606 * 16 15 3 40 40 H 0.96997 * 119.99772 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 6 4.0571 2.8632 -0.2492 7 6 4.1846 3.4429 -1.4978 8 6 4.6317 4.7456 -1.6160 9 6 4.9616 5.4710 -0.4826 10 6 4.8332 4.8870 0.7752 11 6 4.3806 3.5823 0.8863 12 8 5.2112 5.7973 1.7195 13 6 5.9585 6.8015 1.0080 14 8 5.4202 6.7471 -0.3263 15 7 1.6525 2.0974 1.2518 16 6 2.1139 1.5589 2.5337 17 6 0.8590 3.2130 1.2238 18 1 0.2557 3.4249 0.3533 19 6 0.8298 4.0717 2.3140 20 7 1.7612 3.9907 3.2406 21 14 -0.5311 5.3423 2.4662 22 1 -1.4470 5.2283 1.3030 23 1 -1.2915 5.1053 3.7196 24 1 0.0631 6.7028 2.4976 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 3.8570 0.8799 -1.0113 31 1 4.0029 0.9834 0.7597 32 1 3.9306 2.8780 -2.3826 33 1 4.7252 5.1977 -2.5923 34 1 4.2799 3.1269 1.8604 35 1 7.0205 6.5565 1.0028 36 1 5.7935 7.7851 1.4477 37 1 3.0206 2.0797 2.8414 38 1 1.3395 1.7012 3.2876 39 1 2.3248 0.4949 2.4260 40 1 1.7406 4.5905 4.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170451249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:07 Heat of formation + Delta-G solvation = -32.154474 kcal Electronic energy + Delta-G solvation = -22703.506667 eV Core-core repulsion = 19484.494002 eV Total energy + Delta-G solvation = -3219.012664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.95500 -39.60385 -37.82095 -37.13880 -34.77118 -32.57067 -31.81795 -31.18148 -28.86795 -27.90016 -26.64555 -25.18051 -24.02405 -23.74506 -22.41700 -20.41619 -18.79109 -18.68931 -18.30648 -18.15368 -17.03453 -16.93257 -15.93235 -15.40604 -15.28998 -15.21369 -14.83503 -14.70906 -14.50072 -14.14505 -13.87577 -13.69960 -13.54238 -13.30987 -12.95738 -12.79737 -12.67329 -12.57359 -12.23275 -12.11333 -11.97663 -11.84823 -11.68830 -11.36537 -11.31105 -11.17271 -10.49589 -9.52835 -8.85432 -8.53994 -7.68834 -5.06991 0.35671 0.51734 1.40554 1.44662 1.50897 1.95901 2.56662 2.68128 2.79419 3.45865 3.72810 3.79595 3.84623 4.00153 4.12787 4.26069 4.37168 4.43305 4.50804 4.57281 4.61674 4.73083 4.84841 4.90869 5.01698 5.06800 5.25062 5.26455 5.29234 5.30650 5.34131 5.47449 5.51837 5.64524 5.68539 5.71797 5.75940 5.85973 5.97595 6.34692 6.45627 7.31167 8.07366 8.48370 9.32809 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.008422 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.482447 B = 3323.722289 C = 4522.339658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.174 3.826 4 H 0.057 0.943 5 C -0.086 4.086 6 C -0.054 4.054 7 C -0.110 4.110 8 C -0.106 4.106 9 C -0.005 4.005 10 C 0.008 3.992 11 C -0.069 4.069 12 O -0.338 6.338 13 C 0.204 3.796 14 O -0.327 6.327 15 N -0.592 5.592 16 C 0.180 3.820 17 C -0.230 4.230 18 H 0.060 0.940 19 C -0.044 4.044 20 N -0.919 5.919 21 Si 0.935 3.065 22 H -0.270 1.270 23 H -0.296 1.296 24 H -0.308 1.308 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.032 0.968 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.169 0.831 33 H 0.156 0.844 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.149 0.851 37 H 0.004 0.996 38 H 0.007 0.993 39 H 0.028 0.972 40 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.639 -3.969 -9.882 13.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C 0.067 3.933 4 H 0.075 0.925 5 C -0.125 4.125 6 C -0.055 4.055 7 C -0.127 4.127 8 C -0.125 4.125 9 C -0.049 4.049 10 C -0.035 4.035 11 C -0.088 4.088 12 O -0.256 6.256 13 C 0.093 3.907 14 O -0.244 6.244 15 N -0.314 5.314 16 C 0.035 3.965 17 C -0.361 4.361 18 H 0.078 0.922 19 C -0.240 4.240 20 N -0.567 5.567 21 Si 0.767 3.233 22 H -0.195 1.195 23 H -0.223 1.223 24 H -0.237 1.237 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.186 0.814 33 H 0.173 0.827 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.166 0.834 37 H 0.022 0.978 38 H 0.026 0.974 39 H 0.046 0.954 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 7.600 -3.679 -9.648 12.821 hybrid contribution -0.720 1.586 1.249 2.143 sum 6.880 -2.092 -8.399 11.057 Atomic orbital electron populations 1.21551 0.96353 1.00463 1.00891 1.21903 0.95982 0.96738 1.01917 1.20679 0.91467 0.92862 0.88300 0.92476 1.21180 0.97480 0.90919 1.02943 1.19734 0.96590 0.97607 0.91560 1.21102 0.99813 0.93986 0.97835 1.20293 1.02468 0.93745 0.95978 1.20060 1.05280 0.84289 0.95295 1.20039 1.04396 0.92583 0.86524 1.20016 0.98895 0.89871 1.00007 1.87352 1.70472 1.34716 1.33013 1.25976 0.95589 0.94402 0.74687 1.87214 1.76461 1.26476 1.34278 1.43944 1.57778 1.28854 1.00830 1.20459 0.96762 0.92500 0.86773 1.19254 1.15900 0.99805 1.01097 0.92244 1.25309 0.99487 0.99539 0.99633 1.70191 1.33346 1.40143 1.13020 0.85657 0.80727 0.79563 0.77323 1.19455 1.22338 1.23676 0.93506 0.92314 0.94916 0.89639 0.92782 0.87718 0.92202 0.81378 0.82654 0.87467 0.87749 0.83404 0.97804 0.97393 0.95376 0.95382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.80 71.98 0.71 -3.41 16 2 C -0.13 -3.66 5.36 30.59 0.16 -3.49 16 3 C 0.17 6.15 2.09 44.99 0.09 6.25 16 4 H 0.06 2.10 7.85 -2.39 -0.02 2.08 16 5 C -0.09 -2.67 4.78 29.85 0.14 -2.53 16 6 C -0.05 -1.95 4.95 -19.86 -0.10 -2.05 16 7 C -0.11 -3.28 9.69 22.27 0.22 -3.07 16 8 C -0.11 -3.36 10.06 22.34 0.22 -3.14 16 9 C -0.01 -0.21 7.15 22.59 0.16 -0.05 16 10 C 0.01 0.36 7.15 22.59 0.16 0.52 16 11 C -0.07 -3.01 9.31 22.34 0.21 -2.80 16 12 O -0.34 -14.54 11.40 -76.04 -0.87 -15.41 16 13 C 0.20 6.26 8.89 113.37 1.01 7.26 16 14 O -0.33 -11.65 11.40 -76.05 -0.87 -12.51 16 15 N -0.59 -27.07 1.65 -702.79 -1.16 -28.23 16 16 C 0.18 8.49 7.90 127.77 1.01 9.50 16 17 C -0.23 -12.19 9.61 84.03 0.81 -11.38 16 18 H 0.06 3.18 7.81 -2.91 -0.02 3.15 16 19 C -0.04 -2.49 5.06 84.86 0.43 -2.06 16 20 N -0.92 -54.28 10.67 21.65 0.23 -54.04 16 21 Si 0.94 47.10 29.58 68.60 2.03 49.13 16 22 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 24 H -0.31 -16.14 7.11 99.48 0.71 -15.43 16 25 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.03 1.22 7.75 -2.39 -0.02 1.20 16 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.05 1.61 6.49 -2.39 -0.02 1.60 16 30 H 0.10 2.36 8.08 -2.39 -0.02 2.34 16 31 H 0.06 1.95 7.45 -2.39 -0.02 1.94 16 32 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 33 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 34 H 0.11 5.34 6.20 -2.91 -0.02 5.32 16 35 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.15 3.54 8.14 -2.39 -0.02 3.52 16 37 H 0.00 0.20 5.58 -2.39 -0.01 0.19 16 38 H 0.01 0.39 7.19 -2.39 -0.02 0.37 16 39 H 0.03 1.13 6.36 -2.39 -0.02 1.11 16 40 H 0.24 14.12 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -68.34 323.71 5.63 -62.71 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.03 Total: 8.81 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 5.23 Total: -10.45 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -0.93 Total: -82.28 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -1.73 Total: -27.92 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -68.34 5.63 -62.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170451249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.554 kcal (2) G-P(sol) polarization free energy of solvation -68.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds