Wall clock time and date at job start Mon Mar 30 2020 02:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47021 * 2 1 4 4 H 1.08995 * 109.47401 * 55.00245 * 3 2 1 5 5 C 1.53004 * 109.46909 * 174.99752 * 3 2 1 6 6 C 1.50701 * 109.47379 * 184.99816 * 5 3 2 7 7 C 1.38257 * 119.93111 * 269.98680 * 6 5 3 8 8 C 1.38232 * 120.14210 * 179.79189 * 7 6 5 9 9 C 1.38542 * 120.03165 * 0.42479 * 8 7 6 10 10 C 1.39262 * 119.82601 * 359.57075 * 9 8 7 11 11 C 1.38234 * 119.92784 * 89.99832 * 6 5 3 12 12 O 1.36499 * 108.64097 * 180.24761 * 10 9 8 13 13 C 1.43985 * 105.48667 * 342.72185 * 12 10 9 14 14 O 1.36506 * 131.53269 * 179.88070 * 9 8 7 15 15 N 1.46500 * 109.47457 * 294.99659 * 3 2 1 16 16 C 1.46501 * 120.00145 * 300.00530 * 15 3 2 17 17 C 1.36936 * 119.99958 * 119.99740 * 15 3 2 18 18 H 1.08004 * 119.99791 * 20.31802 * 17 15 3 19 19 C 1.38814 * 120.00237 * 200.31703 * 17 15 3 20 20 N 1.31614 * 119.99736 * 15.06318 * 19 17 15 21 21 Si 1.86798 * 120.00003 * 195.06990 * 19 17 15 22 22 H 1.48497 * 109.47332 * 84.83689 * 21 19 17 23 23 H 1.48496 * 109.46773 * 204.83723 * 21 19 17 24 24 H 1.48509 * 109.47119 * 324.83655 * 21 19 17 25 25 H 1.08997 * 109.47440 * 59.99870 * 1 2 3 26 26 H 1.09005 * 109.47079 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47085 * 299.99944 * 1 2 3 28 28 H 1.09001 * 109.47161 * 239.99271 * 2 1 3 29 29 H 1.09005 * 109.46891 * 119.99868 * 2 1 3 30 30 H 1.09001 * 109.46972 * 65.00215 * 5 3 2 31 31 H 1.08999 * 109.47551 * 305.00304 * 5 3 2 32 32 H 1.08006 * 119.92439 * 0.03618 * 7 6 5 33 33 H 1.08003 * 119.98403 * 180.32550 * 8 7 6 34 34 H 1.08006 * 119.98666 * 359.97438 * 11 6 5 35 35 H 1.08997 * 110.57428 * 268.54640 * 13 12 10 36 36 H 1.09004 * 110.57350 * 145.67339 * 13 12 10 37 37 H 1.08999 * 109.47134 * 95.15639 * 16 15 3 38 38 H 1.08991 * 109.47133 * 215.15844 * 16 15 3 39 39 H 1.09003 * 109.46807 * 335.16013 * 16 15 3 40 40 H 0.96997 * 120.00213 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1258 6 6 4.0570 2.8632 0.2493 7 6 4.3809 3.5823 -0.8863 8 6 4.8287 4.8856 -0.7783 9 6 4.9625 5.4717 0.4699 10 6 4.6362 4.7474 1.6137 11 6 4.1840 3.4430 1.4977 12 8 4.8464 5.5387 2.7059 13 6 5.6902 6.6113 2.2469 14 8 5.3773 6.7168 0.8454 15 7 1.6525 2.0974 -1.2518 16 6 2.1139 1.5589 -2.5337 17 6 0.8588 3.2130 -1.2237 18 1 0.7848 3.8004 -0.3204 19 6 0.1495 3.5890 -2.3562 20 7 -0.0041 2.7386 -3.3489 21 14 -0.5868 5.3019 -2.4712 22 1 0.4414 6.2502 -2.9700 23 1 -1.7390 5.2834 -3.4077 24 1 -1.0480 5.7337 -1.1273 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.0029 0.9835 -0.7596 31 1 3.8570 0.8799 1.0113 32 1 4.2800 3.1260 -1.8600 33 1 5.0760 5.4468 -1.6674 34 1 3.9301 2.8790 2.3832 35 1 6.7412 6.3586 2.3867 36 1 5.4462 7.5390 2.7646 37 1 1.3497 0.9010 -2.9476 38 1 2.3009 2.3794 -3.2263 39 1 3.0344 0.9954 -2.3808 40 1 -0.4993 3.0013 -4.1404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170451250.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:10 Heat of formation + Delta-G solvation = -33.470140 kcal Electronic energy + Delta-G solvation = -22354.386557 eV Core-core repulsion = 19135.316841 eV Total energy + Delta-G solvation = -3219.069716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.03276 -39.67830 -37.85299 -37.21050 -34.78810 -32.62601 -31.95809 -31.19165 -28.89356 -27.90539 -26.68304 -25.23732 -24.03851 -23.83612 -22.48579 -20.44461 -18.81528 -18.78159 -18.36192 -18.20285 -17.10652 -16.88678 -15.96010 -15.43890 -15.38557 -15.23365 -14.80650 -14.76509 -14.55430 -14.33013 -13.93415 -13.63505 -13.63084 -13.38812 -13.09503 -12.78078 -12.68221 -12.44354 -12.25543 -12.15479 -12.01220 -11.85850 -11.66932 -11.44848 -11.37821 -11.22483 -10.51592 -9.71892 -8.88663 -8.59310 -7.70877 -5.10486 0.28169 0.35775 1.43121 1.46795 1.51502 1.87061 2.55957 2.60718 2.69179 3.42080 3.59952 3.77673 3.85831 3.95707 4.11065 4.22769 4.32705 4.33941 4.43221 4.55624 4.59786 4.63475 4.75627 4.88843 4.99833 5.06440 5.12448 5.17311 5.22065 5.28947 5.30993 5.39542 5.48908 5.60106 5.65555 5.71810 5.77166 5.81263 5.91937 6.24279 6.44902 7.29835 8.05559 8.45709 9.31173 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.006898 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.834054 B = 4058.445548 C = 5113.711992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 C 0.174 3.826 4 H 0.051 0.949 5 C -0.085 4.085 6 C -0.048 4.048 7 C -0.086 4.086 8 C -0.110 4.110 9 C 0.001 3.999 10 C 0.014 3.986 11 C -0.106 4.106 12 O -0.326 6.326 13 C 0.205 3.795 14 O -0.331 6.331 15 N -0.591 5.591 16 C 0.181 3.819 17 C -0.223 4.223 18 H 0.054 0.946 19 C -0.047 4.047 20 N -0.933 5.933 21 Si 0.939 3.061 22 H -0.293 1.293 23 H -0.298 1.298 24 H -0.280 1.280 25 H 0.029 0.971 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.148 0.852 35 H 0.106 0.894 36 H 0.158 0.842 37 H -0.002 1.002 38 H 0.012 0.988 39 H 0.033 0.967 40 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.451 -0.523 10.250 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C 0.067 3.933 4 H 0.069 0.931 5 C -0.124 4.124 6 C -0.048 4.048 7 C -0.104 4.104 8 C -0.129 4.129 9 C -0.043 4.043 10 C -0.030 4.030 11 C -0.124 4.124 12 O -0.243 6.243 13 C 0.094 3.906 14 O -0.248 6.248 15 N -0.313 5.313 16 C 0.036 3.964 17 C -0.354 4.354 18 H 0.072 0.928 19 C -0.241 4.241 20 N -0.581 5.581 21 Si 0.770 3.230 22 H -0.221 1.221 23 H -0.225 1.225 24 H -0.206 1.206 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.166 0.834 35 H 0.123 0.877 36 H 0.175 0.825 37 H 0.017 0.983 38 H 0.031 0.969 39 H 0.052 0.948 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.318 -0.294 10.229 16.014 hybrid contribution -0.816 1.492 -0.557 1.789 sum 11.503 1.198 9.672 15.076 Atomic orbital electron populations 1.21511 0.96959 0.99973 1.00644 1.21916 0.95542 0.97321 1.01604 1.20602 0.91959 0.92373 0.88346 0.93114 1.21122 0.96666 0.91030 1.03601 1.19666 0.96330 0.97661 0.91136 1.20863 0.97258 0.92951 0.99309 1.20208 1.03029 0.95339 0.94278 1.19876 1.04566 0.84424 0.95467 1.19874 1.04662 0.93864 0.84633 1.20112 1.02823 0.90503 0.98973 1.87277 1.68146 1.37177 1.31669 1.26070 0.95820 0.92034 0.76670 1.87283 1.82988 1.27024 1.27495 1.43935 1.56435 1.29831 1.01076 1.20442 0.93879 0.95587 0.86461 1.19209 1.18330 1.00572 0.97336 0.92802 1.25298 1.00303 0.99945 0.98603 1.70195 1.45901 1.33748 1.08286 0.85699 0.77521 0.82807 0.76978 1.22092 1.22502 1.20574 0.95202 0.92803 0.93922 0.92887 0.89992 0.90403 0.88248 0.85220 0.84683 0.83390 0.87701 0.82527 0.98340 0.96920 0.94836 0.94841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 9.80 71.98 0.71 -4.08 16 2 C -0.12 -3.96 5.36 30.59 0.16 -3.80 16 3 C 0.17 6.24 2.09 44.99 0.09 6.33 16 4 H 0.05 1.95 7.85 -2.39 -0.02 1.93 16 5 C -0.09 -2.45 4.77 29.85 0.14 -2.31 16 6 C -0.05 -1.52 4.95 -19.86 -0.10 -1.62 16 7 C -0.09 -2.93 9.30 22.27 0.21 -2.73 16 8 C -0.11 -3.74 10.06 22.34 0.22 -3.51 16 9 C 0.00 0.02 7.15 22.59 0.16 0.18 16 10 C 0.01 0.45 7.15 22.59 0.16 0.61 16 11 C -0.11 -3.24 9.71 22.34 0.22 -3.03 16 12 O -0.33 -9.53 11.40 -76.04 -0.87 -10.39 16 13 C 0.20 4.48 8.89 113.37 1.01 5.49 16 14 O -0.33 -10.15 11.40 -76.12 -0.87 -11.02 16 15 N -0.59 -26.65 1.65 -702.80 -1.16 -27.81 16 16 C 0.18 8.25 7.29 127.77 0.93 9.18 16 17 C -0.22 -11.81 9.61 84.03 0.81 -11.00 16 18 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 19 C -0.05 -2.60 5.06 84.86 0.43 -2.17 16 20 N -0.93 -54.22 10.67 21.65 0.23 -53.99 16 21 Si 0.94 46.45 29.58 68.60 2.03 48.48 16 22 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 23 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 24 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 25 H 0.03 1.35 7.75 -2.39 -0.02 1.33 16 26 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.72 7.51 -2.39 -0.02 1.71 16 29 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.08 2.18 6.44 -2.39 -0.02 2.17 16 31 H 0.10 2.20 8.08 -2.39 -0.02 2.18 16 32 H 0.13 4.55 7.42 -2.91 -0.02 4.53 16 33 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 34 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 35 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.16 2.28 8.14 -2.39 -0.02 2.27 16 37 H 0.00 -0.09 7.40 -2.39 -0.02 -0.10 16 38 H 0.01 0.62 7.22 -2.39 -0.02 0.60 16 39 H 0.03 1.26 6.36 -2.39 -0.02 1.25 16 40 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -64.93 326.18 5.55 -59.39 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.02 Total: 7.80 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 5.16 Total: -12.46 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -0.93 Total: -81.79 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -1.74 Total: -21.42 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -64.93 5.55 -59.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170451250.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.918 kcal (2) G-P(sol) polarization free energy of solvation -64.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds