Wall clock time and date at job start Mon Mar 30 2020 01:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46994 * 2 1 4 4 C 1.52998 * 109.47609 * 239.99906 * 2 1 3 5 5 H 1.08999 * 109.47356 * 177.32843 * 4 2 1 6 6 O 1.42906 * 109.47028 * 57.32384 * 4 2 1 7 7 C 1.50706 * 109.46894 * 297.33128 * 4 2 1 8 8 O 1.21291 * 120.00105 * 10.51856 * 7 4 2 9 9 N 1.34773 * 119.99443 * 190.52313 * 7 4 2 10 10 C 1.37098 * 120.00373 * 342.16848 * 9 7 4 11 11 H 1.08007 * 119.99647 * 256.85387 * 10 9 7 12 12 C 1.38945 * 120.00449 * 76.85375 * 10 9 7 13 13 N 1.31415 * 120.00146 * 10.90663 * 12 10 9 14 14 Si 1.86801 * 120.00022 * 190.90209 * 12 10 9 15 15 H 1.48493 * 109.47075 * 90.00438 * 14 12 10 16 16 H 1.48503 * 109.46932 * 210.00154 * 14 12 10 17 17 H 1.48497 * 109.47234 * 329.99772 * 14 12 10 18 18 C 1.46509 * 119.99873 * 162.16149 * 9 7 4 19 19 C 1.50705 * 109.46755 * 89.99887 * 18 9 7 20 20 C 1.38232 * 119.99889 * 269.73085 * 19 18 9 21 21 C 1.38240 * 119.99894 * 179.76761 * 20 19 18 22 22 C 1.38240 * 119.99400 * 0.48177 * 21 20 19 23 23 C 1.38234 * 120.00116 * 359.79214 * 22 21 20 24 24 C 1.38228 * 119.99537 * 90.00093 * 19 18 9 25 25 H 1.08995 * 109.47625 * 299.99810 * 1 2 3 26 26 H 1.09006 * 109.47080 * 60.00289 * 1 2 3 27 27 H 1.09004 * 109.46920 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47080 * 119.99711 * 2 1 3 29 29 H 1.09003 * 109.47078 * 54.96252 * 3 2 1 30 30 H 1.09002 * 109.46914 * 174.96126 * 3 2 1 31 31 H 1.08997 * 109.47003 * 294.95937 * 3 2 1 32 32 H 0.96698 * 114.00002 * 300.00415 * 6 4 2 33 33 H 0.96994 * 120.00294 * 177.69025 * 13 12 10 34 34 H 1.08997 * 109.47541 * 209.99801 * 18 9 7 35 35 H 1.09007 * 109.46758 * 330.00472 * 18 9 7 36 36 H 1.08001 * 120.00451 * 359.97438 * 20 19 18 37 37 H 1.07992 * 120.00006 * 180.25360 * 21 20 19 38 38 H 1.08007 * 119.99618 * 179.76763 * 22 21 20 39 39 H 1.08006 * 119.99769 * 179.97438 * 23 22 21 40 40 H 1.07995 * 120.00593 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 1 3.1290 -0.6799 -1.2734 6 8 1.5131 -0.0849 -2.4152 7 6 1.5925 -2.1599 -1.2165 8 8 0.7781 -2.5232 -0.3943 9 7 2.0973 -3.0428 -2.1009 10 6 2.7170 -2.5951 -3.2389 11 1 2.2002 -2.6348 -4.1865 12 6 4.0098 -2.0903 -3.1733 13 7 4.7172 -2.2359 -2.0753 14 14 4.7426 -1.2048 -4.6458 15 1 4.4377 0.2456 -4.5533 16 1 6.2145 -1.4012 -4.6594 17 1 4.1583 -1.7548 -5.8953 18 6 1.9838 -4.4811 -1.8460 19 6 0.7011 -4.9977 -2.4451 20 6 -0.4572 -5.0127 -1.6908 21 6 -1.6349 -5.4821 -2.2418 22 6 -1.6520 -5.9457 -3.5441 23 6 -0.4924 -5.9359 -4.2965 24 6 0.6841 -5.4617 -3.7471 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8901 29 1 1.6048 1.9817 0.8414 30 1 3.1262 1.4438 0.0903 31 1 1.7522 1.9296 -0.9317 32 1 0.5472 -0.0844 -2.4604 33 1 5.6312 -1.9132 -2.0409 34 1 2.8301 -4.9982 -2.2983 35 1 1.9808 -4.6604 -0.7708 36 1 -0.4428 -4.6547 -0.6719 37 1 -2.5407 -5.4900 -1.6538 38 1 -2.5713 -6.3159 -3.9734 39 1 -0.5057 -6.2985 -5.3138 40 1 1.5900 -5.4544 -4.3349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179604329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:40 Heat of formation + Delta-G solvation = -63.564505 kcal Electronic energy + Delta-G solvation = -22644.311039 eV Core-core repulsion = 19423.936334 eV Total energy + Delta-G solvation = -3220.374705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.40097 -38.42346 -36.23594 -34.79637 -32.93526 -32.20305 -30.45954 -30.33068 -26.81985 -26.61051 -25.56338 -24.04048 -21.97472 -20.98947 -19.83096 -19.09632 -17.54270 -16.40323 -15.62071 -15.60311 -14.82327 -14.70921 -14.67004 -14.34272 -14.30333 -13.49199 -13.14181 -12.92049 -12.83891 -12.46803 -12.03101 -11.94060 -11.67383 -11.57643 -11.41870 -11.25493 -11.05072 -10.92738 -10.62971 -10.48495 -10.43007 -10.33190 -10.28854 -10.13755 -9.51629 -8.78251 -8.40220 -8.37061 -7.96879 -7.08099 -6.32116 -4.37969 1.89336 1.95665 3.21248 3.28217 3.30980 3.78395 4.14531 4.33245 4.84420 4.95691 5.37803 5.41158 5.41806 5.49241 5.52185 5.58321 5.74002 5.79248 6.02260 6.08171 6.11624 6.20588 6.25276 6.28331 6.37970 6.45222 6.54098 6.55331 6.66885 6.73041 6.80563 6.94224 6.98893 7.02920 7.08702 7.35813 7.51298 7.57359 8.17226 8.40344 8.53909 9.04142 9.45828 9.92832 10.69745 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014154 B = 0.008179 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.756586 B = 3422.632067 C = 4766.469741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.114 4.114 3 C -0.141 4.141 4 C 0.113 3.887 5 H 0.128 0.872 6 O -0.534 6.534 7 C 0.492 3.508 8 O -0.589 6.589 9 N -0.440 5.440 10 C -0.330 4.330 11 H 0.075 0.925 12 C 0.066 3.934 13 N -0.871 5.871 14 Si 0.911 3.089 15 H -0.271 1.271 16 H -0.287 1.287 17 H -0.270 1.270 18 C 0.152 3.848 19 C -0.080 4.080 20 C -0.097 4.097 21 C -0.132 4.132 22 C -0.134 4.134 23 C -0.132 4.132 24 C -0.102 4.102 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.358 0.642 33 H 0.269 0.731 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.116 -0.829 -0.202 6.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.133 4.133 3 C -0.198 4.198 4 C 0.051 3.949 5 H 0.145 0.855 6 O -0.337 6.337 7 C 0.281 3.719 8 O -0.473 6.473 9 N -0.160 5.160 10 C -0.459 4.459 11 H 0.093 0.907 12 C -0.141 4.141 13 N -0.506 5.506 14 Si 0.738 3.262 15 H -0.196 1.196 16 H -0.213 1.213 17 H -0.195 1.195 18 C 0.030 3.970 19 C -0.081 4.081 20 C -0.116 4.116 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.150 4.150 24 C -0.121 4.121 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.204 0.796 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.144 0.856 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.658 -0.863 0.158 5.726 hybrid contribution 0.046 0.377 -0.633 0.738 sum -5.612 -0.486 -0.475 5.652 Atomic orbital electron populations 1.22103 0.95268 1.04456 0.99882 1.21557 0.96681 0.95963 0.99082 1.21764 1.00568 0.96170 1.01295 1.22001 1.01196 0.87691 0.84028 0.85492 1.86664 1.24365 1.79552 1.43122 1.21554 0.80417 0.89177 0.80770 1.90401 1.34124 1.80795 1.42003 1.43059 1.51701 1.01407 1.19865 1.19031 0.97027 1.42345 0.87457 0.90711 1.25715 0.96354 0.95092 0.96967 1.69894 1.09620 1.43579 1.27495 0.86191 0.77455 0.80710 0.81849 1.19609 1.21315 1.19473 1.20448 0.92640 0.85313 0.98643 1.20575 0.96916 0.96383 0.94267 1.21249 0.92081 0.97598 1.00631 1.21064 0.97852 1.00561 0.95577 1.20982 0.97738 1.01678 0.94855 1.21036 0.93229 1.01405 0.99351 1.21112 0.98023 0.97924 0.95029 0.93945 0.93908 0.88944 0.90925 0.93494 0.93133 0.92247 0.79636 0.92115 0.90641 0.92073 0.85558 0.87001 0.87139 0.86918 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 8.55 37.16 0.32 -2.43 16 2 C -0.11 -2.12 2.47 -90.62 -0.22 -2.34 16 3 C -0.14 -2.28 9.13 37.16 0.34 -1.94 16 4 C 0.11 2.45 2.21 -27.88 -0.06 2.39 16 5 H 0.13 3.11 6.02 -51.93 -0.31 2.80 16 6 O -0.53 -11.25 11.76 -35.23 -0.41 -11.67 16 7 C 0.49 11.63 6.91 -10.98 -0.08 11.55 16 8 O -0.59 -14.02 12.00 5.55 0.07 -13.95 16 9 N -0.44 -10.57 2.18 -116.08 -0.25 -10.83 16 10 C -0.33 -8.24 7.72 -14.93 -0.12 -8.36 16 11 H 0.08 1.91 7.85 -52.48 -0.41 1.50 16 12 C 0.07 1.63 4.29 -17.47 -0.08 1.56 16 13 N -0.87 -22.51 12.48 55.50 0.69 -21.82 16 14 Si 0.91 20.03 29.57 -169.99 -5.03 15.00 16 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 17 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 18 C 0.15 3.35 5.41 -5.19 -0.03 3.32 16 19 C -0.08 -1.59 5.46 -104.63 -0.57 -2.16 16 20 C -0.10 -1.83 9.22 -39.58 -0.36 -2.20 16 21 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 22 C -0.13 -2.05 10.05 -39.58 -0.40 -2.44 16 23 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 24 C -0.10 -1.86 9.70 -39.59 -0.38 -2.25 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.67 6.74 -51.93 -0.35 0.32 16 27 H 0.09 1.80 5.38 -51.93 -0.28 1.53 16 28 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.96 7.62 -51.93 -0.40 0.57 16 32 H 0.36 6.55 7.24 45.56 0.33 6.88 16 33 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.08 1.66 7.98 -51.93 -0.41 1.24 16 35 H 0.06 1.36 7.67 -51.93 -0.40 0.96 16 36 H 0.13 2.49 7.15 -52.49 -0.38 2.11 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16 39 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 40 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 327.28 15.07 4.93 4.93 Total: -1.00 -27.15 327.28 -7.56 -34.71 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -5.13 Total: 13.97 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -2.44 Total: -10.36 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.44 Total: -32.64 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.35 Total: -25.62 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.15 -7.56 -34.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179604329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.851 kcal (2) G-P(sol) polarization free energy of solvation -27.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds