Wall clock time and date at job start Mon Mar 30 2020 01:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46994 * 2 1 4 4 C 1.52998 * 109.47609 * 239.99906 * 2 1 3 5 5 H 1.08999 * 109.47356 * 177.32843 * 4 2 1 6 6 O 1.42906 * 109.47028 * 57.32384 * 4 2 1 7 7 C 1.50706 * 109.46894 * 297.33128 * 4 2 1 8 8 O 1.21291 * 120.00105 * 10.51856 * 7 4 2 9 9 N 1.34773 * 119.99443 * 190.52313 * 7 4 2 10 10 C 1.37098 * 120.00373 * 342.16848 * 9 7 4 11 11 H 1.08007 * 119.99647 * 256.85387 * 10 9 7 12 12 C 1.38945 * 120.00449 * 76.85375 * 10 9 7 13 13 N 1.31415 * 120.00146 * 10.90663 * 12 10 9 14 14 Si 1.86801 * 120.00022 * 190.90209 * 12 10 9 15 15 H 1.48493 * 109.47075 * 90.00438 * 14 12 10 16 16 H 1.48503 * 109.46932 * 210.00154 * 14 12 10 17 17 H 1.48497 * 109.47234 * 329.99772 * 14 12 10 18 18 C 1.46509 * 119.99873 * 162.16149 * 9 7 4 19 19 C 1.50705 * 109.46755 * 89.99887 * 18 9 7 20 20 C 1.38232 * 119.99889 * 269.73085 * 19 18 9 21 21 C 1.38240 * 119.99894 * 179.76761 * 20 19 18 22 22 C 1.38240 * 119.99400 * 0.48177 * 21 20 19 23 23 C 1.38234 * 120.00116 * 359.79214 * 22 21 20 24 24 C 1.38228 * 119.99537 * 90.00093 * 19 18 9 25 25 H 1.08995 * 109.47625 * 299.99810 * 1 2 3 26 26 H 1.09006 * 109.47080 * 60.00289 * 1 2 3 27 27 H 1.09004 * 109.46920 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47080 * 119.99711 * 2 1 3 29 29 H 1.09003 * 109.47078 * 54.96252 * 3 2 1 30 30 H 1.09002 * 109.46914 * 174.96126 * 3 2 1 31 31 H 1.08997 * 109.47003 * 294.95937 * 3 2 1 32 32 H 0.96698 * 114.00002 * 300.00415 * 6 4 2 33 33 H 0.96994 * 120.00294 * 177.69025 * 13 12 10 34 34 H 1.08997 * 109.47541 * 209.99801 * 18 9 7 35 35 H 1.09007 * 109.46758 * 330.00472 * 18 9 7 36 36 H 1.08001 * 120.00451 * 359.97438 * 20 19 18 37 37 H 1.07992 * 120.00006 * 180.25360 * 21 20 19 38 38 H 1.08007 * 119.99618 * 179.76763 * 22 21 20 39 39 H 1.08006 * 119.99769 * 179.97438 * 23 22 21 40 40 H 1.07995 * 120.00593 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 1 3.1290 -0.6799 -1.2734 6 8 1.5131 -0.0849 -2.4152 7 6 1.5925 -2.1599 -1.2165 8 8 0.7781 -2.5232 -0.3943 9 7 2.0973 -3.0428 -2.1009 10 6 2.7170 -2.5951 -3.2389 11 1 2.2002 -2.6348 -4.1865 12 6 4.0098 -2.0903 -3.1733 13 7 4.7172 -2.2359 -2.0753 14 14 4.7426 -1.2048 -4.6458 15 1 4.4377 0.2456 -4.5533 16 1 6.2145 -1.4012 -4.6594 17 1 4.1583 -1.7548 -5.8953 18 6 1.9838 -4.4811 -1.8460 19 6 0.7011 -4.9977 -2.4451 20 6 -0.4572 -5.0127 -1.6908 21 6 -1.6349 -5.4821 -2.2418 22 6 -1.6520 -5.9457 -3.5441 23 6 -0.4924 -5.9359 -4.2965 24 6 0.6841 -5.4617 -3.7471 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8901 29 1 1.6048 1.9817 0.8414 30 1 3.1262 1.4438 0.0903 31 1 1.7522 1.9296 -0.9317 32 1 0.5472 -0.0844 -2.4604 33 1 5.6312 -1.9132 -2.0409 34 1 2.8301 -4.9982 -2.2983 35 1 1.9808 -4.6604 -0.7708 36 1 -0.4428 -4.6547 -0.6719 37 1 -2.5407 -5.4900 -1.6538 38 1 -2.5713 -6.3159 -3.9734 39 1 -0.5057 -6.2985 -5.3138 40 1 1.5900 -5.4544 -4.3349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179604329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:39 Heat of formation + Delta-G solvation = -78.421005 kcal Electronic energy + Delta-G solvation = -22644.955265 eV Core-core repulsion = 19423.936334 eV Total energy + Delta-G solvation = -3221.018932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.12388 -39.85820 -37.90251 -36.63631 -34.49539 -33.96362 -32.09367 -31.67428 -28.46205 -27.97038 -27.35201 -25.78973 -23.33545 -22.45753 -21.47208 -20.79610 -19.33815 -17.89134 -17.40395 -17.21165 -16.53630 -16.42592 -16.26151 -15.92057 -15.75945 -15.13653 -14.80750 -14.43109 -14.17450 -13.95328 -13.63188 -13.45983 -13.26755 -13.11485 -12.98764 -12.87885 -12.80307 -12.60774 -12.26823 -12.00107 -11.97735 -11.86786 -11.74346 -11.72499 -11.18281 -10.64704 -10.03680 -9.71879 -9.54228 -8.94598 -8.23071 -6.35601 0.52720 0.60234 1.43724 1.50662 1.54885 1.94841 2.35372 2.83212 3.02106 3.22100 3.76378 3.98000 4.03487 4.09754 4.12336 4.22481 4.26876 4.38470 4.46301 4.59821 4.72373 4.75136 4.81515 4.86986 4.90100 4.94182 5.04913 5.17756 5.20890 5.22601 5.27426 5.46638 5.53334 5.60366 5.66602 5.68041 5.91589 6.22801 6.29868 6.58994 6.82612 7.11184 7.59156 8.04466 8.77766 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014154 B = 0.008179 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.756586 B = 3422.632067 C = 4766.469741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.133 4.133 4 C 0.120 3.880 5 H 0.099 0.901 6 O -0.540 6.540 7 C 0.480 3.520 8 O -0.597 6.597 9 N -0.450 5.450 10 C -0.335 4.335 11 H 0.067 0.933 12 C 0.034 3.966 13 N -0.897 5.897 14 Si 0.965 3.035 15 H -0.275 1.275 16 H -0.283 1.283 17 H -0.263 1.263 18 C 0.156 3.844 19 C -0.102 4.102 20 C -0.115 4.115 21 C -0.131 4.131 22 C -0.124 4.124 23 C -0.127 4.127 24 C -0.117 4.117 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.370 0.630 33 H 0.270 0.730 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.107 0.893 37 H 0.139 0.861 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.905 -0.459 -1.452 8.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.130 4.130 3 C -0.190 4.190 4 C 0.058 3.942 5 H 0.117 0.883 6 O -0.345 6.345 7 C 0.269 3.731 8 O -0.482 6.482 9 N -0.170 5.170 10 C -0.463 4.463 11 H 0.084 0.916 12 C -0.170 4.170 13 N -0.533 5.533 14 Si 0.790 3.210 15 H -0.201 1.201 16 H -0.209 1.209 17 H -0.187 1.187 18 C 0.034 3.966 19 C -0.103 4.103 20 C -0.134 4.134 21 C -0.149 4.149 22 C -0.142 4.142 23 C -0.145 4.145 24 C -0.136 4.136 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.218 0.782 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.125 0.875 37 H 0.157 0.843 38 H 0.169 0.831 39 H 0.163 0.837 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.460 -0.506 -1.093 7.557 hybrid contribution 0.528 0.187 -0.239 0.609 sum -6.932 -0.318 -1.332 7.066 Atomic orbital electron populations 1.21985 0.93823 1.03280 1.01754 1.21525 0.97861 0.96993 0.96629 1.21706 1.00326 0.94464 1.02541 1.21816 0.99673 0.87020 0.85712 0.88301 1.86616 1.25576 1.79236 1.43064 1.21997 0.80364 0.90095 0.80655 1.90396 1.34419 1.81194 1.42178 1.43237 1.51729 1.02218 1.19845 1.19014 0.97184 1.42697 0.87402 0.91579 1.26277 0.96494 0.95330 0.98940 1.69973 1.09871 1.44406 1.29011 0.85370 0.76919 0.79216 0.79531 1.20064 1.20860 1.18707 1.20340 0.93966 0.84605 0.97736 1.20381 0.96097 0.98420 0.95430 1.21182 0.93096 0.99076 1.00000 1.21378 0.97604 0.99375 0.96509 1.21442 0.98961 0.99797 0.94012 1.21404 0.92327 0.99972 1.00796 1.21181 0.99231 0.98767 0.94379 0.91640 0.92394 0.91554 0.92471 0.90799 0.93695 0.92067 0.78225 0.92043 0.91729 0.93660 0.87452 0.84331 0.83117 0.83723 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 8.55 71.98 0.62 -4.39 16 2 C -0.11 -4.10 2.47 -10.79 -0.03 -4.12 16 3 C -0.13 -4.12 9.13 71.98 0.66 -3.46 16 4 C 0.12 5.30 2.21 29.85 0.07 5.36 16 5 H 0.10 4.98 6.02 -2.39 -0.01 4.97 16 6 O -0.54 -22.64 11.76 -148.98 -1.75 -24.39 16 7 C 0.48 23.40 6.91 87.66 0.61 24.01 16 8 O -0.60 -29.41 12.00 -3.06 -0.04 -29.45 16 9 N -0.45 -22.42 2.18 -639.56 -1.39 -23.81 16 10 C -0.33 -17.08 7.72 84.04 0.65 -16.44 16 11 H 0.07 3.44 7.85 -2.91 -0.02 3.42 16 12 C 0.03 1.72 4.29 84.92 0.36 2.09 16 13 N -0.90 -47.54 12.48 21.66 0.27 -47.27 16 14 Si 0.96 41.17 29.57 68.60 2.03 43.20 16 15 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 18 C 0.16 7.25 5.41 85.63 0.46 7.71 16 19 C -0.10 -4.16 5.46 -19.87 -0.11 -4.26 16 20 C -0.11 -4.37 9.22 22.27 0.21 -4.17 16 21 C -0.13 -3.99 10.05 22.27 0.22 -3.76 16 22 C -0.12 -3.33 10.05 22.27 0.22 -3.10 16 23 C -0.13 -3.70 10.05 22.27 0.22 -3.47 16 24 C -0.12 -4.22 9.70 22.27 0.22 -4.01 16 25 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.06 1.71 6.74 -2.38 -0.02 1.69 16 27 H 0.07 2.57 5.38 -2.38 -0.01 2.56 16 28 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.87 7.62 -2.39 -0.02 1.85 16 32 H 0.37 13.28 7.24 -74.06 -0.54 12.74 16 33 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 34 H 0.06 3.03 7.98 -2.39 -0.02 3.01 16 35 H 0.04 2.16 7.67 -2.38 -0.02 2.15 16 36 H 0.11 4.41 7.15 -2.91 -0.02 4.39 16 37 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 38 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 39 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 40 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -59.46 327.28 4.00 -55.46 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: 0.50 Total: 38.28 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 4.38 Total: -12.02 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -1.12 Total: -71.08 kcal Atomic # 8 Polarization: -52.05 SS G_CDS: -1.79 Total: -53.84 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -59.46 4.00 -55.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179604329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.956 kcal (2) G-P(sol) polarization free energy of solvation -59.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds