Wall clock time and date at job start Mon Mar 30 2020 02:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47248 * 2 1 4 4 C 1.53004 * 109.46926 * 119.99813 * 2 1 3 5 5 O 1.42898 * 109.47102 * 175.00027 * 4 2 1 6 6 C 1.42899 * 114.00045 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47394 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99936 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00217 * 180.02562 * 7 6 5 10 10 C 1.39943 * 120.00142 * 174.88898 * 9 7 6 11 11 C 1.39287 * 119.94535 * 145.78087 * 10 9 7 12 12 C 1.38491 * 120.42528 * 179.97438 * 11 10 9 13 13 C 1.37679 * 120.32381 * 359.97438 * 12 11 10 14 14 C 1.40748 * 119.88500 * 0.02562 * 13 12 11 15 15 C 1.41410 * 120.20884 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99479 * 205.17834 * 15 14 13 17 17 C 1.39925 * 120.00126 * 25.17868 * 15 14 13 18 18 N 1.30839 * 120.00271 * 16.79548 * 17 15 14 19 19 Si 1.86799 * 120.00066 * 196.79538 * 17 15 14 20 20 H 1.48492 * 109.47286 * 94.96276 * 19 17 15 21 21 H 1.48506 * 109.47262 * 214.96375 * 19 17 15 22 22 H 1.48506 * 109.46958 * 334.95851 * 19 17 15 23 23 C 1.38246 * 119.94394 * 325.51381 * 10 9 7 24 24 H 1.08994 * 109.47634 * 299.99902 * 1 2 3 25 25 H 1.08999 * 109.47054 * 60.00733 * 1 2 3 26 26 H 1.09003 * 109.46972 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47390 * 239.99607 * 2 1 3 28 28 H 1.09005 * 109.47191 * 59.99500 * 3 2 1 29 29 H 1.08992 * 109.47360 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47145 * 299.99985 * 3 2 1 31 31 H 1.08997 * 109.47353 * 54.99794 * 4 2 1 32 32 H 1.09003 * 109.46806 * 295.00174 * 4 2 1 33 33 H 1.09006 * 109.47411 * 300.00353 * 6 5 4 34 34 H 1.09002 * 109.46795 * 60.00158 * 6 5 4 35 35 H 0.97005 * 119.99878 * 354.89041 * 9 7 6 36 36 H 1.07994 * 119.79263 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.83866 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.06026 * 180.02562 * 13 12 11 39 39 H 0.96988 * 120.00258 * 180.02562 * 18 17 15 40 40 H 1.07992 * 120.16132 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4641 -0.8238 1.1921 6 6 4.0450 -1.4846 2.3182 7 6 5.5421 -1.5354 2.1537 8 8 6.0607 -1.0529 1.1692 9 7 6.3047 -2.1171 3.1004 10 6 7.6822 -2.2601 2.8991 11 6 8.5564 -2.1639 3.9792 12 6 9.9213 -2.3043 3.7914 13 6 10.4292 -2.5412 2.5338 14 6 9.5580 -2.6408 1.4329 15 6 10.0723 -2.8834 0.1382 16 1 9.5150 -2.5689 -0.7318 17 6 11.3031 -3.5310 -0.0157 18 7 11.8208 -4.1981 0.9837 19 14 12.2071 -3.4432 -1.6480 20 1 13.1954 -2.3357 -1.6075 21 1 12.9120 -4.7270 -1.8932 22 1 11.2323 -3.1971 -2.7410 23 6 8.1726 -2.5020 1.6294 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6054 -1.7197 1.2953 32 1 1.7515 -0.1582 2.1370 33 1 3.7982 -0.9371 3.2279 34 1 3.6519 -2.4990 2.3867 35 1 5.8988 -2.4368 3.9214 36 1 8.1674 -1.9787 4.9695 37 1 10.5905 -2.2284 4.6357 38 1 11.4943 -2.6504 2.3923 39 1 12.6741 -4.6467 0.8772 40 1 7.4951 -2.5814 0.7921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180754585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:32 Heat of formation + Delta-G solvation = -75.089246 kcal Electronic energy + Delta-G solvation = -20677.871828 eV Core-core repulsion = 17456.997373 eV Total energy + Delta-G solvation = -3220.874456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.74997 -38.22435 -37.00407 -35.07302 -34.39013 -33.01852 -29.80105 -29.35804 -27.37425 -27.23022 -25.55134 -25.22940 -21.64867 -20.84292 -20.49635 -19.55967 -17.78435 -17.03185 -16.46543 -16.38112 -15.41944 -15.26970 -14.84472 -14.57418 -14.51959 -13.95894 -13.60889 -13.12382 -12.95882 -12.85506 -12.45405 -12.26036 -12.14250 -11.97587 -11.62639 -11.21176 -11.18522 -11.11439 -11.04531 -10.88276 -10.76346 -10.43133 -10.11366 -9.76392 -9.62747 -9.36699 -9.04946 -8.92187 -7.43059 -6.90509 -6.69003 -4.31271 2.59346 2.85582 3.04449 3.11943 3.17762 3.22180 3.39875 3.99060 4.08891 4.65396 4.66863 4.71248 4.93562 5.00392 5.10072 5.15694 5.23424 5.29142 5.40619 5.53501 5.67855 5.74347 5.75776 5.89021 6.10636 6.25573 6.25913 6.40652 6.76058 6.94209 7.05617 7.08483 7.11584 7.28314 7.59478 7.74577 7.98678 8.12520 8.18615 8.29079 8.65220 8.75620 8.96758 9.00934 10.24249 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.003552 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.136545 B = 7882.036172 C = 8922.878917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.146 4.146 4 C 0.064 3.936 5 O -0.359 6.359 6 C 0.047 3.953 7 C 0.503 3.497 8 O -0.495 6.495 9 N -0.668 5.668 10 C 0.152 3.848 11 C -0.261 4.261 12 C -0.092 4.092 13 C -0.172 4.172 14 C 0.120 3.880 15 C -0.458 4.458 16 H 0.079 0.921 17 C 0.076 3.924 18 N -0.796 5.796 19 Si 0.909 3.091 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.261 1.261 23 C -0.210 4.210 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.279 0.721 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.760 3.994 3.229 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.013 4.013 5 O -0.277 6.277 6 C -0.033 4.033 7 C 0.287 3.713 8 O -0.368 6.368 9 N -0.314 5.314 10 C 0.061 3.939 11 C -0.283 4.283 12 C -0.112 4.112 13 C -0.191 4.191 14 C 0.117 3.883 15 C -0.488 4.488 16 H 0.097 0.903 17 C -0.142 4.142 18 N -0.422 5.422 19 Si 0.733 3.267 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.185 1.185 23 C -0.231 4.231 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.131 4.270 2.369 16.854 hybrid contribution 0.039 -0.395 0.128 0.417 sum -16.092 3.875 2.496 16.739 Atomic orbital electron populations 1.21785 0.94385 1.01880 1.02165 1.21088 0.95207 0.97164 0.97975 1.21797 1.02551 0.94826 1.01157 1.22650 0.81102 0.99211 0.98319 1.88031 1.19586 1.78499 1.41559 1.22181 0.92176 0.98334 0.90592 1.20192 0.88131 0.78973 0.83960 1.90782 1.73889 1.43155 1.28931 1.43329 1.07624 1.59973 1.20493 1.17405 0.79972 1.01330 0.95182 1.20029 0.93368 1.19057 0.95831 1.20461 0.93590 1.00451 0.96652 1.21357 1.00062 1.05915 0.91816 1.17495 0.89910 0.87439 0.93474 1.19614 1.02757 1.32966 0.93413 0.90291 1.25904 0.96994 0.92812 0.98456 1.69830 1.17123 1.22676 1.32527 0.86285 0.79818 0.78329 0.82224 1.19341 1.20339 1.18507 1.20986 0.95542 1.12044 0.94570 0.92584 0.92004 0.92563 0.90107 0.93069 0.91346 0.92840 0.93282 0.93295 0.90653 0.90445 0.76834 0.89276 0.89017 0.86281 0.90976 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.19 37.16 0.34 -0.70 16 2 C -0.10 -0.94 3.16 -90.62 -0.29 -1.22 16 3 C -0.15 -1.49 9.09 37.15 0.34 -1.16 16 4 C 0.06 0.66 5.32 37.16 0.20 0.86 16 5 O -0.36 -5.27 9.41 -55.14 -0.52 -5.79 16 6 C 0.05 0.61 6.42 36.01 0.23 0.84 16 7 C 0.50 9.28 7.63 -10.99 -0.08 9.20 16 8 O -0.50 -11.83 14.25 -14.36 -0.20 -12.03 16 9 N -0.67 -11.98 5.34 -9.91 -0.05 -12.03 16 10 C 0.15 3.51 6.25 -83.76 -0.52 2.99 16 11 C -0.26 -5.82 9.97 -39.10 -0.39 -6.21 16 12 C -0.09 -2.19 10.02 -39.69 -0.40 -2.58 16 13 C -0.17 -4.58 8.69 -38.84 -0.34 -4.92 16 14 C 0.12 3.36 5.57 -106.85 -0.59 2.77 16 15 C -0.46 -12.82 9.05 -37.74 -0.34 -13.16 16 16 H 0.08 2.19 7.90 -52.49 -0.41 1.78 16 17 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 18 N -0.80 -20.97 10.94 55.55 0.61 -20.36 16 19 Si 0.91 19.41 29.59 -169.99 -5.03 14.38 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 23 C -0.21 -5.58 8.39 -38.68 -0.32 -5.90 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.87 7.82 -51.93 -0.41 0.47 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.40 5.28 8.82 -40.82 -0.36 4.92 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.12 3.25 6.16 -52.49 -0.32 2.92 16 39 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 40 H 0.11 2.91 6.48 -52.49 -0.34 2.57 16 LS Contribution 337.78 15.07 5.09 5.09 Total: -1.00 -32.53 337.78 -8.42 -40.96 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.05 Total: 7.11 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -2.26 Total: -17.32 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.55 Total: -32.40 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.72 Total: -17.82 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.53 -8.42 -40.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180754585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.133 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds