Wall clock time and date at job start Mon Mar 30 2020 02:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47248 * 2 1 4 4 C 1.53004 * 109.46926 * 119.99813 * 2 1 3 5 5 O 1.42898 * 109.47102 * 175.00027 * 4 2 1 6 6 C 1.42899 * 114.00045 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47394 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99936 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00217 * 180.02562 * 7 6 5 10 10 C 1.39943 * 120.00142 * 174.88898 * 9 7 6 11 11 C 1.39287 * 119.94535 * 145.78087 * 10 9 7 12 12 C 1.38491 * 120.42528 * 179.97438 * 11 10 9 13 13 C 1.37679 * 120.32381 * 359.97438 * 12 11 10 14 14 C 1.40748 * 119.88500 * 0.02562 * 13 12 11 15 15 C 1.41410 * 120.20884 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99479 * 205.17834 * 15 14 13 17 17 C 1.39925 * 120.00126 * 25.17868 * 15 14 13 18 18 N 1.30839 * 120.00271 * 16.79548 * 17 15 14 19 19 Si 1.86799 * 120.00066 * 196.79538 * 17 15 14 20 20 H 1.48492 * 109.47286 * 94.96276 * 19 17 15 21 21 H 1.48506 * 109.47262 * 214.96375 * 19 17 15 22 22 H 1.48506 * 109.46958 * 334.95851 * 19 17 15 23 23 C 1.38246 * 119.94394 * 325.51381 * 10 9 7 24 24 H 1.08994 * 109.47634 * 299.99902 * 1 2 3 25 25 H 1.08999 * 109.47054 * 60.00733 * 1 2 3 26 26 H 1.09003 * 109.46972 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47390 * 239.99607 * 2 1 3 28 28 H 1.09005 * 109.47191 * 59.99500 * 3 2 1 29 29 H 1.08992 * 109.47360 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47145 * 299.99985 * 3 2 1 31 31 H 1.08997 * 109.47353 * 54.99794 * 4 2 1 32 32 H 1.09003 * 109.46806 * 295.00174 * 4 2 1 33 33 H 1.09006 * 109.47411 * 300.00353 * 6 5 4 34 34 H 1.09002 * 109.46795 * 60.00158 * 6 5 4 35 35 H 0.97005 * 119.99878 * 354.89041 * 9 7 6 36 36 H 1.07994 * 119.79263 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.83866 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.06026 * 180.02562 * 13 12 11 39 39 H 0.96988 * 120.00258 * 180.02562 * 18 17 15 40 40 H 1.07992 * 120.16132 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4641 -0.8238 1.1921 6 6 4.0450 -1.4846 2.3182 7 6 5.5421 -1.5354 2.1537 8 8 6.0607 -1.0529 1.1692 9 7 6.3047 -2.1171 3.1004 10 6 7.6822 -2.2601 2.8991 11 6 8.5564 -2.1639 3.9792 12 6 9.9213 -2.3043 3.7914 13 6 10.4292 -2.5412 2.5338 14 6 9.5580 -2.6408 1.4329 15 6 10.0723 -2.8834 0.1382 16 1 9.5150 -2.5689 -0.7318 17 6 11.3031 -3.5310 -0.0157 18 7 11.8208 -4.1981 0.9837 19 14 12.2071 -3.4432 -1.6480 20 1 13.1954 -2.3357 -1.6075 21 1 12.9120 -4.7270 -1.8932 22 1 11.2323 -3.1971 -2.7410 23 6 8.1726 -2.5020 1.6294 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6054 -1.7197 1.2953 32 1 1.7515 -0.1582 2.1370 33 1 3.7982 -0.9371 3.2279 34 1 3.6519 -2.4990 2.3867 35 1 5.8988 -2.4368 3.9214 36 1 8.1674 -1.9787 4.9695 37 1 10.5905 -2.2284 4.6357 38 1 11.4943 -2.6504 2.3923 39 1 12.6741 -4.6467 0.8772 40 1 7.4951 -2.5814 0.7921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180754585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:32 Heat of formation + Delta-G solvation = -95.373745 kcal Electronic energy + Delta-G solvation = -20678.751430 eV Core-core repulsion = 17456.997373 eV Total energy + Delta-G solvation = -3221.754058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27462 -39.42237 -38.64007 -36.24517 -35.85795 -34.85741 -31.76944 -30.86980 -28.66144 -28.01411 -27.27236 -26.40569 -23.35086 -22.72215 -21.47420 -21.01199 -19.59419 -18.27283 -17.83642 -17.43131 -17.14501 -16.72215 -16.48282 -16.09910 -15.70479 -15.24585 -14.87621 -14.72427 -14.53948 -14.02033 -13.82865 -13.54228 -13.17687 -13.12062 -13.00880 -12.91709 -12.82759 -12.77943 -12.19409 -11.99883 -11.96602 -11.79955 -11.53729 -11.51369 -11.17400 -10.89708 -10.64699 -10.63570 -9.41507 -8.77860 -8.62568 -6.39189 0.83673 0.97953 1.34901 1.46638 1.48905 1.74934 1.86667 2.20250 2.71353 3.02181 3.66443 3.76953 3.92809 4.01035 4.18554 4.23348 4.28569 4.45892 4.51051 4.62367 4.65401 4.74283 4.80673 4.99221 5.02662 5.05362 5.07939 5.10555 5.21152 5.23850 5.31211 5.39140 5.43320 5.73436 5.83891 6.05842 6.08619 6.16452 6.32852 6.64028 6.67969 6.91867 6.99168 7.31753 8.31717 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.003552 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.136545 B = 7882.036172 C = 8922.878917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 C -0.144 4.144 4 C 0.059 3.941 5 O -0.400 6.400 6 C 0.058 3.942 7 C 0.495 3.505 8 O -0.560 6.560 9 N -0.654 5.654 10 C 0.158 3.842 11 C -0.248 4.248 12 C -0.091 4.091 13 C -0.198 4.198 14 C 0.089 3.911 15 C -0.505 4.505 16 H 0.060 0.940 17 C 0.039 3.961 18 N -0.821 5.821 19 Si 0.982 3.018 20 H -0.259 1.259 21 H -0.260 1.260 22 H -0.267 1.267 23 C -0.240 4.240 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.425 0.575 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.290 0.710 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.523 3.966 5.341 19.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.119 4.119 3 C -0.201 4.201 4 C -0.016 4.016 5 O -0.319 6.319 6 C -0.021 4.021 7 C 0.283 3.717 8 O -0.437 6.437 9 N -0.302 5.302 10 C 0.065 3.935 11 C -0.269 4.269 12 C -0.110 4.110 13 C -0.218 4.218 14 C 0.086 3.914 15 C -0.534 4.534 16 H 0.078 0.922 17 C -0.176 4.176 18 N -0.447 5.447 19 Si 0.802 3.198 20 H -0.183 1.183 21 H -0.184 1.184 22 H -0.191 1.191 23 C -0.261 4.261 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.264 0.736 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.943 4.222 4.546 18.985 hybrid contribution 0.465 -0.350 -0.412 0.713 sum -17.478 3.872 4.134 18.373 Atomic orbital electron populations 1.21731 0.91962 1.02761 1.03021 1.21152 0.97131 0.96342 0.97264 1.21772 1.00274 0.95816 1.02280 1.22890 0.78893 1.00672 0.99186 1.88001 1.22139 1.79050 1.42746 1.22238 0.87318 1.00941 0.91625 1.21388 0.90684 0.77092 0.82506 1.90767 1.75566 1.45859 1.31476 1.43209 1.05673 1.59550 1.21782 1.17503 0.82771 0.99186 0.94031 1.20499 0.92625 1.16333 0.97460 1.20867 0.95071 0.98680 0.96353 1.21327 0.99297 1.08204 0.92997 1.17835 0.90966 0.88376 0.94241 1.19747 1.04795 1.35696 0.93193 0.92196 1.26685 0.96887 0.91643 1.02418 1.69850 1.17740 1.22717 1.34382 0.85210 0.78270 0.79210 0.77081 1.18343 1.18374 1.19093 1.20936 0.94916 1.14570 0.95707 0.91303 0.91596 0.91675 0.92188 0.91670 0.94778 0.92032 0.91437 0.91125 0.86412 0.86996 0.73638 0.84595 0.85653 0.87694 0.89926 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.19 71.98 0.66 -0.98 16 2 C -0.10 -1.86 3.16 -10.79 -0.03 -1.89 16 3 C -0.14 -2.90 9.09 71.98 0.65 -2.25 16 4 C 0.06 1.09 5.32 71.98 0.38 1.47 16 5 O -0.40 -11.33 9.41 -129.94 -1.22 -12.55 16 6 C 0.06 1.33 6.42 71.24 0.46 1.79 16 7 C 0.50 17.99 7.63 87.66 0.67 18.66 16 8 O -0.56 -27.93 14.25 15.99 0.23 -27.70 16 9 N -0.65 -22.25 5.34 -303.65 -1.62 -23.87 16 10 C 0.16 7.22 6.25 38.10 0.24 7.45 16 11 C -0.25 -10.41 9.97 22.58 0.23 -10.19 16 12 C -0.09 -4.18 10.02 22.20 0.22 -3.96 16 13 C -0.20 -10.87 8.69 22.75 0.20 -10.67 16 14 C 0.09 5.24 5.57 -21.31 -0.12 5.12 16 15 C -0.50 -30.18 9.05 23.46 0.21 -29.97 16 16 H 0.06 3.64 7.90 -2.91 -0.02 3.61 16 17 C 0.04 2.08 5.16 85.25 0.44 2.52 16 18 N -0.82 -44.47 10.94 21.82 0.24 -44.23 16 19 Si 0.98 41.03 29.59 68.60 2.03 43.06 16 20 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 21 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 C -0.24 -13.36 8.39 22.85 0.19 -13.17 16 24 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.03 0.90 7.82 -2.39 -0.02 0.89 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.42 9.66 8.82 -92.70 -0.82 8.84 16 36 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 38 H 0.11 5.94 6.16 -2.91 -0.02 5.92 16 39 H 0.29 14.01 8.30 -92.72 -0.77 13.24 16 40 H 0.08 4.74 6.48 -2.91 -0.02 4.72 16 Total: -1.00 -77.73 337.78 4.27 -73.46 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.21 Total: 27.91 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 4.40 Total: -36.08 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -1.38 Total: -68.10 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.99 Total: -40.25 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -77.73 4.27 -73.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180754585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.914 kcal (2) G-P(sol) polarization free energy of solvation -77.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds