Wall clock time and date at job start Mon Mar 30 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47627 * 2 1 4 4 C 1.52999 * 109.47038 * 239.99460 * 2 1 3 5 5 O 1.42908 * 109.47051 * 120.00045 * 2 1 3 6 6 N 1.41603 * 113.99740 * 59.99806 * 5 2 1 7 7 C 1.34778 * 119.99426 * 179.97438 * 6 5 2 8 8 O 1.21273 * 120.00398 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99467 * 179.97438 * 7 6 5 10 10 H 1.08994 * 109.46868 * 60.00594 * 9 7 6 11 11 C 1.50700 * 109.47101 * 299.99887 * 9 7 6 12 12 H 1.07999 * 120.00390 * 324.88247 * 11 9 7 13 13 C 1.37879 * 119.99622 * 144.88160 * 11 9 7 14 14 N 1.31512 * 120.00149 * 5.19278 * 13 11 9 15 15 Si 1.86797 * 119.99751 * 185.19258 * 13 11 9 16 16 H 1.48504 * 109.47212 * 90.00567 * 15 13 11 17 17 H 1.48503 * 109.47112 * 209.99821 * 15 13 11 18 18 H 1.48495 * 109.47419 * 330.00066 * 15 13 11 19 19 C 1.50698 * 109.46727 * 180.02562 * 9 7 6 20 20 C 1.38237 * 120.00641 * 66.01191 * 19 9 7 21 21 C 1.38227 * 120.00134 * 179.80926 * 20 19 9 22 22 C 1.38236 * 120.00158 * 0.39913 * 21 20 19 23 23 C 1.38232 * 119.99984 * 359.85526 * 22 21 20 24 24 C 1.38232 * 119.99891 * 359.95486 * 23 22 21 25 25 H 1.08996 * 109.46754 * 300.00311 * 1 2 3 26 26 H 1.08996 * 109.46774 * 59.99868 * 1 2 3 27 27 H 1.08992 * 109.46902 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47400 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46916 * 299.99895 * 3 2 1 30 30 H 1.09004 * 109.47141 * 59.99746 * 3 2 1 31 31 H 1.08994 * 109.47777 * 300.00394 * 4 2 1 32 32 H 1.09005 * 109.46912 * 60.00468 * 4 2 1 33 33 H 1.09004 * 109.47238 * 179.97438 * 4 2 1 34 34 H 0.96999 * 120.00247 * 359.97438 * 6 5 2 35 35 H 0.97002 * 120.00398 * 179.97438 * 14 13 11 36 36 H 1.08003 * 119.99618 * 359.97438 * 20 19 9 37 37 H 1.08005 * 119.99840 * 180.22954 * 21 20 19 38 38 H 1.08001 * 120.00173 * 179.83752 * 22 21 20 39 39 H 1.07995 * 120.00324 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.00111 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0064 -0.6737 1.1668 6 7 1.5885 -2.0232 1.2636 7 6 1.9693 -2.7725 2.3172 8 8 2.6694 -2.2910 3.1824 9 6 1.5241 -4.2086 2.4205 10 1 1.8878 -4.7648 1.5565 11 6 0.0186 -4.2664 2.4578 12 1 -0.5394 -3.4893 2.9590 13 6 -0.6464 -5.3113 1.8520 14 7 0.0332 -6.3094 1.3309 15 14 -2.5126 -5.3093 1.7714 16 1 -2.9536 -4.6328 0.5251 17 1 -3.0098 -6.7086 1.7776 18 1 -3.0581 -4.5850 2.9474 19 6 2.0810 -4.8177 3.6814 20 6 1.6599 -4.3586 4.9154 21 6 2.1678 -4.9200 6.0719 22 6 3.1032 -5.9349 5.9945 23 6 3.5283 -6.3904 4.7606 24 6 3.0174 -5.8317 3.6040 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7210 -1.2494 34 1 1.0282 -2.4082 0.5718 35 1 -0.4346 -7.0447 0.9050 36 1 0.9319 -3.5630 4.9758 37 1 1.8360 -4.5638 7.0360 38 1 3.5021 -6.3717 6.8981 39 1 4.2594 -7.1830 4.7001 40 1 3.3492 -6.1879 2.6399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183030282.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:49 Heat of formation + Delta-G solvation = -22.868840 kcal Electronic energy + Delta-G solvation = -21907.381577 eV Core-core repulsion = 18688.771569 eV Total energy + Delta-G solvation = -3218.610009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.15565 -38.31303 -37.17446 -33.69417 -33.50914 -31.21192 -30.45579 -29.92482 -27.49711 -27.30881 -27.01138 -23.92788 -21.60568 -21.15921 -20.20852 -19.36831 -17.15305 -16.80746 -15.99954 -15.81310 -14.92112 -14.86212 -14.39302 -14.23168 -13.85867 -13.67565 -13.51632 -12.90410 -12.65811 -12.42481 -12.40243 -12.26485 -11.83305 -11.81103 -11.72865 -11.66707 -11.55647 -11.07405 -11.05913 -10.71786 -10.42627 -10.41896 -10.27492 -10.04370 -9.46677 -8.82829 -8.68560 -8.08304 -7.92784 -7.62258 -6.33187 -4.40482 2.32212 2.40371 2.76187 3.14547 3.23751 3.27085 3.74727 4.23928 4.77402 4.81810 4.84013 4.86835 5.02559 5.05025 5.52162 5.55504 5.71426 5.73871 5.78191 5.80567 5.82327 5.89443 5.98595 6.07981 6.10659 6.22618 6.27167 6.30844 6.50017 6.58774 6.82890 6.96224 7.13715 7.38322 7.44259 7.57930 7.59421 7.71838 7.93023 8.04001 8.23883 8.65038 9.23967 9.31595 10.74826 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013503 B = 0.006783 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.094268 B = 4126.748093 C = 5518.000824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.080 3.920 3 C -0.132 4.132 4 C -0.173 4.173 5 O -0.151 6.151 6 N -0.591 5.591 7 C 0.536 3.464 8 O -0.551 6.551 9 C 0.065 3.935 10 H 0.092 0.908 11 C -0.521 4.521 12 H 0.066 0.934 13 C 0.074 3.926 14 N -0.875 5.875 15 Si 0.899 3.101 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.271 1.271 19 C -0.011 4.011 20 C -0.084 4.084 21 C -0.134 4.134 22 C -0.147 4.147 23 C -0.132 4.132 24 C -0.115 4.115 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.410 0.590 35 H 0.268 0.732 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 6.769 -3.816 7.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.040 3.960 3 C -0.191 4.191 4 C -0.231 4.231 5 O -0.154 6.154 6 N -0.295 5.295 7 C 0.326 3.674 8 O -0.427 6.427 9 C 0.043 3.957 10 H 0.110 0.890 11 C -0.558 4.558 12 H 0.084 0.916 13 C -0.131 4.131 14 N -0.510 5.510 15 Si 0.726 3.274 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.195 1.195 19 C -0.012 4.012 20 C -0.102 4.102 21 C -0.152 4.152 22 C -0.165 4.165 23 C -0.150 4.150 24 C -0.133 4.133 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.251 0.749 35 H 0.078 0.922 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.091 7.030 -3.153 7.984 hybrid contribution -1.499 -0.251 -0.656 1.656 sum 0.592 6.779 -3.809 7.799 Atomic orbital electron populations 1.22380 0.94900 1.03337 1.02595 1.21908 0.94269 0.93303 0.86543 1.21717 1.02044 0.92653 1.02667 1.22377 1.02257 1.01203 0.97269 1.90575 1.71786 1.10932 1.42134 1.47823 1.55070 0.99380 1.27274 1.22068 0.77963 0.88537 0.78804 1.90601 1.38576 1.73868 1.39641 1.18045 0.97464 0.85276 0.94877 0.89025 1.20746 0.88159 1.09780 1.37142 0.91618 1.24980 0.99004 0.94812 0.94302 1.69913 1.36036 1.08673 1.36427 0.86470 0.84596 0.77624 0.78758 1.20313 1.20949 1.19518 1.19906 0.91854 0.94213 0.95220 1.20840 0.98661 0.98782 0.91891 1.20949 0.98663 0.97864 0.97759 1.20810 0.99789 0.99042 0.96847 1.20892 1.00848 1.00373 0.92907 1.20973 0.97177 0.97482 0.97713 0.91579 0.91660 0.91548 0.91656 0.90759 0.91608 0.91839 0.91573 0.91639 0.74898 0.92215 0.87020 0.87525 0.87666 0.87488 0.86907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 8.52 37.16 0.32 -1.92 16 2 C 0.08 1.10 1.13 -90.62 -0.10 1.00 16 3 C -0.13 -1.48 8.84 37.16 0.33 -1.15 16 4 C -0.17 -2.12 8.51 37.16 0.32 -1.80 16 5 O -0.15 -2.86 10.63 -29.66 -0.32 -3.17 16 6 N -0.59 -11.88 5.49 31.22 0.17 -11.71 16 7 C 0.54 12.57 7.19 -10.98 -0.08 12.49 16 8 O -0.55 -14.46 15.82 -12.63 -0.20 -14.66 16 9 C 0.06 1.55 2.38 -94.07 -0.22 1.32 16 10 H 0.09 2.26 7.13 -51.93 -0.37 1.89 16 11 C -0.52 -12.86 7.47 -34.44 -0.26 -13.12 16 12 H 0.07 1.65 7.82 -52.49 -0.41 1.24 16 13 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 14 N -0.88 -22.55 12.84 55.43 0.71 -21.83 16 15 Si 0.90 19.48 29.54 -169.99 -5.02 14.46 16 16 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 19 C -0.01 -0.26 4.30 -104.62 -0.45 -0.71 16 20 C -0.08 -1.91 8.30 -39.59 -0.33 -2.24 16 21 C -0.13 -2.69 10.05 -39.59 -0.40 -3.08 16 22 C -0.15 -2.75 10.05 -39.58 -0.40 -3.15 16 23 C -0.13 -2.57 10.05 -39.59 -0.40 -2.96 16 24 C -0.12 -2.53 9.67 -39.58 -0.38 -2.91 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.92 6.96 -51.93 -0.36 0.56 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.82 6.96 -51.93 -0.36 0.46 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.41 7.53 6.31 -40.82 -0.26 7.27 16 35 H 0.27 6.60 8.31 -40.82 -0.34 6.27 16 36 H 0.11 2.59 7.89 -52.48 -0.41 2.18 16 37 H 0.11 1.83 8.06 -52.48 -0.42 1.40 16 38 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.11 2.36 7.96 -52.49 -0.42 1.95 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -29.53 338.05 -7.67 -37.20 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -5.96 Total: 11.12 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -2.15 Total: -16.49 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.88 Total: -33.55 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.52 Total: -17.83 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.53 -7.67 -37.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183030282.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.331 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds