Wall clock time and date at job start Mon Mar 30 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47627 * 2 1 4 4 C 1.52999 * 109.47038 * 239.99460 * 2 1 3 5 5 O 1.42908 * 109.47051 * 120.00045 * 2 1 3 6 6 N 1.41603 * 113.99740 * 59.99806 * 5 2 1 7 7 C 1.34778 * 119.99426 * 179.97438 * 6 5 2 8 8 O 1.21273 * 120.00398 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99467 * 179.97438 * 7 6 5 10 10 H 1.08994 * 109.46868 * 60.00594 * 9 7 6 11 11 C 1.50700 * 109.47101 * 299.99887 * 9 7 6 12 12 H 1.07999 * 120.00390 * 324.88247 * 11 9 7 13 13 C 1.37879 * 119.99622 * 144.88160 * 11 9 7 14 14 N 1.31512 * 120.00149 * 5.19278 * 13 11 9 15 15 Si 1.86797 * 119.99751 * 185.19258 * 13 11 9 16 16 H 1.48504 * 109.47212 * 90.00567 * 15 13 11 17 17 H 1.48503 * 109.47112 * 209.99821 * 15 13 11 18 18 H 1.48495 * 109.47419 * 330.00066 * 15 13 11 19 19 C 1.50698 * 109.46727 * 180.02562 * 9 7 6 20 20 C 1.38237 * 120.00641 * 66.01191 * 19 9 7 21 21 C 1.38227 * 120.00134 * 179.80926 * 20 19 9 22 22 C 1.38236 * 120.00158 * 0.39913 * 21 20 19 23 23 C 1.38232 * 119.99984 * 359.85526 * 22 21 20 24 24 C 1.38232 * 119.99891 * 359.95486 * 23 22 21 25 25 H 1.08996 * 109.46754 * 300.00311 * 1 2 3 26 26 H 1.08996 * 109.46774 * 59.99868 * 1 2 3 27 27 H 1.08992 * 109.46902 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47400 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46916 * 299.99895 * 3 2 1 30 30 H 1.09004 * 109.47141 * 59.99746 * 3 2 1 31 31 H 1.08994 * 109.47777 * 300.00394 * 4 2 1 32 32 H 1.09005 * 109.46912 * 60.00468 * 4 2 1 33 33 H 1.09004 * 109.47238 * 179.97438 * 4 2 1 34 34 H 0.96999 * 120.00247 * 359.97438 * 6 5 2 35 35 H 0.97002 * 120.00398 * 179.97438 * 14 13 11 36 36 H 1.08003 * 119.99618 * 359.97438 * 20 19 9 37 37 H 1.08005 * 119.99840 * 180.22954 * 21 20 19 38 38 H 1.08001 * 120.00173 * 179.83752 * 22 21 20 39 39 H 1.07995 * 120.00324 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.00111 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0064 -0.6737 1.1668 6 7 1.5885 -2.0232 1.2636 7 6 1.9693 -2.7725 2.3172 8 8 2.6694 -2.2910 3.1824 9 6 1.5241 -4.2086 2.4205 10 1 1.8878 -4.7648 1.5565 11 6 0.0186 -4.2664 2.4578 12 1 -0.5394 -3.4893 2.9590 13 6 -0.6464 -5.3113 1.8520 14 7 0.0332 -6.3094 1.3309 15 14 -2.5126 -5.3093 1.7714 16 1 -2.9536 -4.6328 0.5251 17 1 -3.0098 -6.7086 1.7776 18 1 -3.0581 -4.5850 2.9474 19 6 2.0810 -4.8177 3.6814 20 6 1.6599 -4.3586 4.9154 21 6 2.1678 -4.9200 6.0719 22 6 3.1032 -5.9349 5.9945 23 6 3.5283 -6.3904 4.7606 24 6 3.0174 -5.8317 3.6040 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7210 -1.2494 34 1 1.0282 -2.4082 0.5718 35 1 -0.4346 -7.0447 0.9050 36 1 0.9319 -3.5630 4.9758 37 1 1.8360 -4.5638 7.0360 38 1 3.5021 -6.3717 6.8981 39 1 4.2594 -7.1830 4.7001 40 1 3.3492 -6.1879 2.6399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183030282.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:49 Heat of formation + Delta-G solvation = -38.287708 kcal Electronic energy + Delta-G solvation = -21908.050190 eV Core-core repulsion = 18688.771569 eV Total energy + Delta-G solvation = -3219.278621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84658 -39.75099 -38.78861 -35.56953 -34.88870 -33.01569 -32.02617 -31.53634 -28.98833 -28.32392 -28.23959 -25.79819 -23.23454 -22.76995 -21.54245 -21.06010 -18.74201 -18.48108 -17.79777 -17.37916 -16.50812 -16.26773 -15.96441 -15.80282 -15.45197 -15.07966 -14.83760 -14.57314 -14.10258 -13.99798 -13.83118 -13.45153 -13.33768 -13.20064 -12.91555 -12.86954 -12.79782 -12.76768 -12.72551 -12.21471 -11.97236 -11.81035 -11.69327 -11.65433 -11.30783 -10.72121 -10.57271 -9.71792 -9.55379 -9.28585 -8.23949 -6.36998 0.71817 0.76933 1.23676 1.42026 1.45390 1.54345 1.89742 2.41364 3.04342 3.23334 3.60032 3.79257 3.81689 3.99162 4.20059 4.30344 4.30984 4.44551 4.51035 4.59510 4.64608 4.73642 4.83665 4.85575 4.86232 4.91774 4.95529 5.06214 5.11664 5.27107 5.28709 5.35129 5.43319 5.62963 5.78507 5.80969 5.88598 6.04093 6.20325 6.38884 6.54219 6.70885 7.30468 7.54332 8.83963 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013503 B = 0.006783 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.094268 B = 4126.748093 C = 5518.000824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.065 3.935 3 C -0.128 4.128 4 C -0.170 4.170 5 O -0.174 6.174 6 N -0.579 5.579 7 C 0.535 3.465 8 O -0.586 6.586 9 C 0.070 3.930 10 H 0.075 0.925 11 C -0.525 4.525 12 H 0.054 0.946 13 C 0.038 3.962 14 N -0.900 5.900 15 Si 0.955 3.045 16 H -0.263 1.263 17 H -0.284 1.284 18 H -0.275 1.275 19 C -0.041 4.041 20 C -0.111 4.111 21 C -0.135 4.135 22 C -0.141 4.141 23 C -0.129 4.129 24 C -0.138 4.138 25 H 0.056 0.944 26 H 0.099 0.901 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.416 0.584 35 H 0.270 0.730 36 H 0.093 0.907 37 H 0.136 0.864 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.240 7.016 -3.946 8.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.026 3.974 3 C -0.186 4.186 4 C -0.228 4.228 5 O -0.179 6.179 6 N -0.281 5.281 7 C 0.325 3.675 8 O -0.465 6.465 9 C 0.048 3.952 10 H 0.093 0.907 11 C -0.562 4.562 12 H 0.072 0.928 13 C -0.165 4.165 14 N -0.536 5.536 15 Si 0.780 3.220 16 H -0.188 1.188 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.042 4.042 20 C -0.130 4.130 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.147 4.147 24 C -0.157 4.157 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.259 0.741 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.160 0.840 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.833 7.292 -3.326 8.221 hybrid contribution -1.372 -0.257 -0.634 1.533 sum 0.461 7.035 -3.960 8.086 Atomic orbital electron populations 1.22374 0.94060 1.02650 1.03864 1.22423 0.95159 0.94372 0.85423 1.21779 1.01969 0.90718 1.04169 1.22365 1.01981 1.00668 0.97767 1.90563 1.72474 1.09646 1.45184 1.47468 1.53940 1.00441 1.26292 1.21957 0.77735 0.88781 0.79065 1.90556 1.40273 1.74611 1.41074 1.17921 0.97091 0.85452 0.94724 0.90731 1.20756 0.88714 1.09614 1.37124 0.92806 1.25592 1.02647 0.94350 0.93930 1.70003 1.37400 1.09127 1.37103 0.85595 0.79996 0.77422 0.78979 1.18803 1.20966 1.19971 1.20024 0.93388 0.95438 0.95313 1.20868 0.99634 0.99461 0.92997 1.21320 0.98351 0.97734 0.97923 1.21296 0.98465 0.97882 0.98206 1.21316 1.00647 1.00460 0.92239 1.21147 0.97714 0.97828 0.98967 0.92441 0.88266 0.93181 0.91872 0.87213 0.92096 0.93171 0.88273 0.92092 0.74084 0.92097 0.88826 0.84639 0.83381 0.83996 0.87134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 8.52 71.98 0.61 -3.58 16 2 C 0.07 1.74 1.13 -10.79 -0.01 1.73 16 3 C -0.13 -2.62 8.84 71.98 0.64 -1.98 16 4 C -0.17 -3.93 8.51 71.98 0.61 -3.32 16 5 O -0.17 -6.72 10.63 -21.39 -0.23 -6.95 16 6 N -0.58 -24.17 5.49 -173.53 -0.95 -25.12 16 7 C 0.53 26.27 7.19 87.66 0.63 26.90 16 8 O -0.59 -32.14 15.82 14.39 0.23 -31.91 16 9 C 0.07 3.48 2.38 -13.03 -0.03 3.45 16 10 H 0.07 3.90 7.13 -2.39 -0.02 3.88 16 11 C -0.52 -26.84 7.47 25.60 0.19 -26.65 16 12 H 0.05 2.82 7.82 -2.91 -0.02 2.80 16 13 C 0.04 1.90 5.45 84.66 0.46 2.36 16 14 N -0.90 -47.23 12.84 21.45 0.28 -46.96 16 15 Si 0.96 40.16 29.54 68.60 2.03 42.18 16 16 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 17 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 C -0.04 -1.99 4.30 -19.86 -0.09 -2.08 16 20 C -0.11 -5.22 8.30 22.27 0.18 -5.04 16 21 C -0.14 -5.25 10.05 22.27 0.22 -5.03 16 22 C -0.14 -4.89 10.05 22.27 0.22 -4.67 16 23 C -0.13 -4.77 10.05 22.27 0.22 -4.54 16 24 C -0.14 -6.16 9.67 22.27 0.22 -5.94 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 1.37 6.96 -2.39 -0.02 1.35 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.28 6.96 -2.39 -0.02 1.26 16 32 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.42 15.92 6.31 -92.71 -0.58 15.33 16 35 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 36 H 0.09 4.58 7.89 -2.91 -0.02 4.56 16 37 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 38 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 39 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 40 H 0.11 4.80 7.96 -2.91 -0.02 4.77 16 Total: -1.00 -65.67 338.05 5.88 -59.79 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: 0.44 Total: 37.36 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 4.09 Total: -28.38 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -0.68 Total: -72.08 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: 0.00 Total: -38.86 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.18 kcal Total: -65.67 5.88 -59.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183030282.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.502 kcal (2) G-P(sol) polarization free energy of solvation -65.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds