Wall clock time and date at job start Mon Mar 30 2020 02:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47085 * 2 1 4 4 C 1.53003 * 109.46913 * 240.00211 * 2 1 3 5 5 O 1.42894 * 109.47366 * 120.00468 * 2 1 3 6 6 N 1.41597 * 114.00282 * 59.99575 * 5 2 1 7 7 C 1.34779 * 120.00247 * 180.02562 * 6 5 2 8 8 O 1.21289 * 119.99765 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00404 * 180.02562 * 7 6 5 10 10 H 1.09000 * 109.47069 * 300.00116 * 9 7 6 11 11 C 1.50702 * 109.47018 * 59.99275 * 9 7 6 12 12 H 1.07997 * 120.00304 * 235.33770 * 11 9 7 13 13 C 1.37879 * 119.99933 * 55.33892 * 11 9 7 14 14 N 1.31516 * 119.99735 * 1.96772 * 13 11 9 15 15 Si 1.86800 * 120.00111 * 181.96427 * 13 11 9 16 16 H 1.48495 * 109.47133 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46977 * 120.00228 * 15 13 11 18 18 H 1.48496 * 109.47065 * 239.99944 * 15 13 11 19 19 C 1.50700 * 109.47580 * 179.97438 * 9 7 6 20 20 C 1.38238 * 119.99685 * 47.22350 * 19 9 7 21 21 C 1.38226 * 119.99901 * 180.02562 * 20 19 9 22 22 C 1.38242 * 120.00207 * 359.95957 * 21 20 19 23 23 C 1.38228 * 119.99589 * 359.97438 * 22 21 20 24 24 C 1.38232 * 120.00167 * 227.20237 * 19 9 7 25 25 H 1.09000 * 109.46827 * 299.99939 * 1 2 3 26 26 H 1.08996 * 109.47587 * 59.99685 * 1 2 3 27 27 H 1.09001 * 109.47469 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46937 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47422 * 299.99914 * 3 2 1 30 30 H 1.09000 * 109.47239 * 60.00313 * 3 2 1 31 31 H 1.09001 * 109.46964 * 300.00200 * 4 2 1 32 32 H 1.09005 * 109.47092 * 59.99784 * 4 2 1 33 33 H 1.08998 * 109.47383 * 179.97438 * 4 2 1 34 34 H 0.97004 * 120.00151 * 0.02562 * 6 5 2 35 35 H 0.97003 * 120.00319 * 179.97438 * 14 13 11 36 36 H 1.08002 * 119.99794 * 359.97438 * 20 19 9 37 37 H 1.08001 * 119.99981 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.99863 * 179.72257 * 22 21 20 39 39 H 1.08005 * 120.00258 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00068 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1667 6 7 1.5885 -2.0231 1.2635 7 6 1.9686 -2.7723 2.3175 8 8 2.6688 -2.2907 3.1828 9 6 1.5244 -4.2087 2.4203 10 1 0.4355 -4.2513 2.4458 11 6 2.0291 -4.9773 1.2263 12 1 1.3362 -5.5226 0.6028 13 6 3.3757 -4.9842 0.9299 14 7 4.2242 -4.3522 1.7111 15 14 3.9948 -5.8914 -0.5812 16 1 2.8479 -6.5156 -1.2882 17 1 4.6739 -4.9332 -1.4900 18 1 4.9548 -6.9458 -0.1667 19 6 2.0812 -4.8178 3.6812 20 6 1.9793 -4.1380 4.8806 21 6 2.4905 -4.6964 6.0371 22 6 3.1029 -5.9350 5.9945 23 6 3.2035 -6.6154 4.7955 24 6 2.6934 -6.0564 3.6386 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2073 -2.1393 33 1 3.1299 -0.7209 -1.2496 34 1 1.0288 -2.4085 0.5713 35 1 5.1716 -4.3574 1.5028 36 1 1.5011 -3.1702 4.9137 37 1 2.4113 -4.1650 6.9740 38 1 3.5063 -6.3693 6.8974 39 1 3.6823 -7.5829 4.7620 40 1 2.7723 -6.5879 2.7017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183030283.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:52 Heat of formation + Delta-G solvation = -13.492687 kcal Electronic energy + Delta-G solvation = -22385.430832 eV Core-core repulsion = 19167.227404 eV Total energy + Delta-G solvation = -3218.203428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.95472 -38.16207 -36.82605 -33.63120 -33.26871 -30.90106 -30.23075 -29.66071 -27.39227 -27.20966 -26.89098 -23.90117 -21.29039 -20.84853 -20.01167 -19.28862 -17.06360 -16.71561 -15.64673 -15.29098 -14.96797 -14.69891 -14.42565 -13.98223 -13.67333 -13.53264 -13.27154 -12.74839 -12.48707 -12.29256 -12.19193 -12.04670 -12.03087 -11.69440 -11.63264 -11.52659 -11.30442 -11.01419 -10.76815 -10.61314 -10.44590 -10.20538 -10.04585 -9.68859 -9.39024 -8.73564 -8.33256 -7.73263 -7.67135 -7.41164 -6.15586 -4.34007 2.49645 2.62364 2.99404 3.18075 3.27855 3.28987 4.18707 4.35284 4.93483 4.94553 4.95449 5.05208 5.11537 5.17037 5.59695 5.64260 5.79442 5.87375 5.89621 5.91037 5.98612 6.06437 6.09514 6.22196 6.27775 6.37412 6.42939 6.47497 6.68587 6.75892 6.87430 7.13064 7.21621 7.56285 7.64087 7.66585 7.75557 7.93713 8.15471 8.25887 8.52678 8.74942 9.33661 9.76380 10.84501 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016630 B = 0.007059 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.341240 B = 3965.484259 C = 5168.817736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.081 3.919 3 C -0.132 4.132 4 C -0.172 4.172 5 O -0.149 6.149 6 N -0.596 5.596 7 C 0.558 3.442 8 O -0.531 6.531 9 C 0.071 3.929 10 H 0.061 0.939 11 C -0.549 4.549 12 H 0.070 0.930 13 C 0.075 3.925 14 N -0.835 5.835 15 Si 0.886 3.114 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.281 1.281 19 C -0.017 4.017 20 C -0.099 4.099 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.062 4.062 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.400 0.600 35 H 0.266 0.734 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.519 4.064 -3.147 8.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.040 3.960 3 C -0.191 4.191 4 C -0.229 4.229 5 O -0.153 6.153 6 N -0.301 5.301 7 C 0.347 3.653 8 O -0.405 6.405 9 C 0.049 3.951 10 H 0.079 0.921 11 C -0.586 4.586 12 H 0.088 0.912 13 C -0.134 4.134 14 N -0.467 5.467 15 Si 0.713 3.287 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.207 1.207 19 C -0.018 4.018 20 C -0.117 4.117 21 C -0.162 4.162 22 C -0.161 4.161 23 C -0.167 4.167 24 C -0.080 4.080 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.239 0.761 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.648 4.576 -2.310 7.627 hybrid contribution 0.483 -0.425 -1.518 1.649 sum -5.165 4.151 -3.828 7.652 Atomic orbital electron populations 1.22357 0.95418 1.02684 1.02364 1.21834 0.93768 0.93309 0.87067 1.21706 1.02186 0.92847 1.02343 1.22353 1.02517 1.01145 0.96934 1.90588 1.72578 1.10939 1.41170 1.47785 1.55837 0.99271 1.27251 1.21485 0.78740 0.86505 0.78556 1.90557 1.36847 1.72519 1.40538 1.17787 0.95901 0.87439 0.93947 0.92120 1.20752 0.92918 1.33876 1.11099 0.91157 1.25080 0.97070 0.95012 0.96251 1.70080 1.03097 1.38296 1.35207 0.86616 0.79205 0.79766 0.83116 1.19413 1.20922 1.20683 1.19722 0.95527 0.93516 0.92997 1.21008 0.99900 0.98310 0.92513 1.20822 1.01668 0.96090 0.97633 1.20787 1.02041 0.96075 0.97165 1.20988 1.02467 0.99711 0.93488 1.21133 0.94279 0.95436 0.97155 0.91776 0.91829 0.92070 0.91667 0.90990 0.91765 0.91716 0.92007 0.91666 0.76072 0.92355 0.87362 0.88016 0.88157 0.87975 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 8.51 37.16 0.32 -1.82 16 2 C 0.08 1.21 1.13 -90.62 -0.10 1.11 16 3 C -0.13 -1.66 8.84 37.16 0.33 -1.34 16 4 C -0.17 -2.47 8.51 37.16 0.32 -2.16 16 5 O -0.15 -3.10 10.63 -29.66 -0.32 -3.42 16 6 N -0.60 -12.70 5.49 31.22 0.17 -12.53 16 7 C 0.56 13.77 5.60 -10.99 -0.06 13.71 16 8 O -0.53 -15.08 14.36 -12.64 -0.18 -15.27 16 9 C 0.07 1.67 2.78 -94.08 -0.26 1.40 16 10 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 11 C -0.55 -13.18 7.12 -34.44 -0.25 -13.42 16 12 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 13 C 0.07 1.88 3.99 -17.82 -0.07 1.81 16 14 N -0.84 -23.00 10.88 55.43 0.60 -22.39 16 15 Si 0.89 19.63 29.54 -169.99 -5.02 14.60 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.02 -0.40 4.52 -104.62 -0.47 -0.87 16 20 C -0.10 -2.28 8.21 -39.59 -0.33 -2.60 16 21 C -0.14 -2.98 10.05 -39.58 -0.40 -3.38 16 22 C -0.14 -2.83 10.05 -39.58 -0.40 -3.23 16 23 C -0.15 -3.10 10.05 -39.59 -0.40 -3.50 16 24 C -0.06 -1.44 8.20 -39.58 -0.32 -1.77 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.77 6.97 -51.93 -0.36 0.41 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.98 6.96 -51.93 -0.36 0.62 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.40 7.47 6.31 -40.82 -0.26 7.21 16 35 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.11 2.48 7.01 -52.49 -0.37 2.11 16 37 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 40 H 0.13 3.06 6.02 -52.49 -0.32 2.74 16 LS Contribution 328.48 15.07 4.95 4.95 Total: -1.00 -30.90 328.48 -7.75 -38.65 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -5.86 Total: 11.43 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -2.09 Total: -16.03 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.77 Total: -34.92 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.50 Total: -18.68 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.90 -7.75 -38.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183030283.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.155 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds