Wall clock time and date at job start Mon Mar 30 2020 02:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47085 * 2 1 4 4 C 1.53003 * 109.46913 * 240.00211 * 2 1 3 5 5 O 1.42894 * 109.47366 * 120.00468 * 2 1 3 6 6 N 1.41597 * 114.00282 * 59.99575 * 5 2 1 7 7 C 1.34779 * 120.00247 * 180.02562 * 6 5 2 8 8 O 1.21289 * 119.99765 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00404 * 180.02562 * 7 6 5 10 10 H 1.09000 * 109.47069 * 300.00116 * 9 7 6 11 11 C 1.50702 * 109.47018 * 59.99275 * 9 7 6 12 12 H 1.07997 * 120.00304 * 235.33770 * 11 9 7 13 13 C 1.37879 * 119.99933 * 55.33892 * 11 9 7 14 14 N 1.31516 * 119.99735 * 1.96772 * 13 11 9 15 15 Si 1.86800 * 120.00111 * 181.96427 * 13 11 9 16 16 H 1.48495 * 109.47133 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46977 * 120.00228 * 15 13 11 18 18 H 1.48496 * 109.47065 * 239.99944 * 15 13 11 19 19 C 1.50700 * 109.47580 * 179.97438 * 9 7 6 20 20 C 1.38238 * 119.99685 * 47.22350 * 19 9 7 21 21 C 1.38226 * 119.99901 * 180.02562 * 20 19 9 22 22 C 1.38242 * 120.00207 * 359.95957 * 21 20 19 23 23 C 1.38228 * 119.99589 * 359.97438 * 22 21 20 24 24 C 1.38232 * 120.00167 * 227.20237 * 19 9 7 25 25 H 1.09000 * 109.46827 * 299.99939 * 1 2 3 26 26 H 1.08996 * 109.47587 * 59.99685 * 1 2 3 27 27 H 1.09001 * 109.47469 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46937 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47422 * 299.99914 * 3 2 1 30 30 H 1.09000 * 109.47239 * 60.00313 * 3 2 1 31 31 H 1.09001 * 109.46964 * 300.00200 * 4 2 1 32 32 H 1.09005 * 109.47092 * 59.99784 * 4 2 1 33 33 H 1.08998 * 109.47383 * 179.97438 * 4 2 1 34 34 H 0.97004 * 120.00151 * 0.02562 * 6 5 2 35 35 H 0.97003 * 120.00319 * 179.97438 * 14 13 11 36 36 H 1.08002 * 119.99794 * 359.97438 * 20 19 9 37 37 H 1.08001 * 119.99981 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.99863 * 179.72257 * 22 21 20 39 39 H 1.08005 * 120.00258 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00068 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1667 6 7 1.5885 -2.0231 1.2635 7 6 1.9686 -2.7723 2.3175 8 8 2.6688 -2.2907 3.1828 9 6 1.5244 -4.2087 2.4203 10 1 0.4355 -4.2513 2.4458 11 6 2.0291 -4.9773 1.2263 12 1 1.3362 -5.5226 0.6028 13 6 3.3757 -4.9842 0.9299 14 7 4.2242 -4.3522 1.7111 15 14 3.9948 -5.8914 -0.5812 16 1 2.8479 -6.5156 -1.2882 17 1 4.6739 -4.9332 -1.4900 18 1 4.9548 -6.9458 -0.1667 19 6 2.0812 -4.8178 3.6812 20 6 1.9793 -4.1380 4.8806 21 6 2.4905 -4.6964 6.0371 22 6 3.1029 -5.9350 5.9945 23 6 3.2035 -6.6154 4.7955 24 6 2.6934 -6.0564 3.6386 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2073 -2.1393 33 1 3.1299 -0.7209 -1.2496 34 1 1.0288 -2.4085 0.5713 35 1 5.1716 -4.3574 1.5028 36 1 1.5011 -3.1702 4.9137 37 1 2.4113 -4.1650 6.9740 38 1 3.5063 -6.3693 6.8974 39 1 3.6823 -7.5829 4.7620 40 1 2.7723 -6.5879 2.7017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183030283.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:52 Heat of formation + Delta-G solvation = -30.543845 kcal Electronic energy + Delta-G solvation = -22386.170226 eV Core-core repulsion = 19167.227404 eV Total energy + Delta-G solvation = -3218.942822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.69159 -39.64185 -38.52510 -35.50787 -34.73458 -32.74683 -31.87437 -31.34444 -28.89832 -28.29519 -28.21116 -25.76918 -22.98519 -22.51469 -21.40919 -21.05602 -18.74310 -18.31959 -17.31066 -17.04936 -16.78957 -16.08149 -15.95241 -15.57000 -15.35832 -14.91686 -14.75632 -14.34224 -14.12367 -13.94841 -13.75832 -13.54622 -13.20794 -13.02002 -12.86093 -12.81333 -12.75140 -12.71849 -12.49076 -12.29463 -11.77090 -11.75133 -11.57871 -11.40527 -11.18960 -10.67462 -10.25976 -9.45047 -9.37012 -9.11661 -8.08465 -6.30443 0.83528 0.92878 1.37824 1.45070 1.45890 1.54511 2.32567 2.48322 3.19003 3.31318 3.74099 3.83201 3.85071 4.03363 4.33188 4.36821 4.49404 4.56398 4.61743 4.65520 4.70539 4.74373 4.84901 4.86582 4.94184 4.99555 5.04321 5.13038 5.15808 5.29733 5.30914 5.44924 5.54336 5.69519 5.89928 5.91163 5.97255 6.30867 6.41008 6.53245 6.71324 6.94119 7.39872 7.94439 8.90427 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016630 B = 0.007059 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.341240 B = 3965.484259 C = 5168.817736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.066 3.934 3 C -0.129 4.129 4 C -0.168 4.168 5 O -0.182 6.182 6 N -0.586 5.586 7 C 0.555 3.445 8 O -0.577 6.577 9 C 0.062 3.938 10 H 0.079 0.921 11 C -0.539 4.539 12 H 0.081 0.919 13 C 0.038 3.962 14 N -0.872 5.872 15 Si 0.942 3.058 16 H -0.253 1.253 17 H -0.292 1.292 18 H -0.286 1.286 19 C -0.039 4.039 20 C -0.119 4.119 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.152 4.152 24 C -0.082 4.082 25 H 0.060 0.940 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.042 0.958 34 H 0.410 0.590 35 H 0.256 0.744 36 H 0.097 0.903 37 H 0.129 0.871 38 H 0.139 0.861 39 H 0.128 0.872 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.418 3.855 -3.906 9.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.026 3.974 3 C -0.187 4.187 4 C -0.226 4.226 5 O -0.186 6.186 6 N -0.289 5.289 7 C 0.345 3.655 8 O -0.455 6.455 9 C 0.041 3.959 10 H 0.096 0.904 11 C -0.577 4.577 12 H 0.099 0.901 13 C -0.167 4.167 14 N -0.506 5.506 15 Si 0.768 3.232 16 H -0.176 1.176 17 H -0.218 1.218 18 H -0.212 1.212 19 C -0.040 4.040 20 C -0.137 4.137 21 C -0.165 4.165 22 C -0.156 4.156 23 C -0.170 4.170 24 C -0.100 4.100 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.061 0.939 34 H 0.252 0.748 35 H 0.065 0.935 36 H 0.115 0.885 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.146 0.854 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.602 4.357 -3.120 8.503 hybrid contribution 0.704 -0.293 -1.296 1.504 sum -5.898 4.064 -4.416 8.414 Atomic orbital electron populations 1.22316 0.93158 1.02876 1.03881 1.22341 0.95698 0.93940 0.85380 1.21770 1.01405 0.91386 1.04166 1.22338 1.01064 1.00921 0.98272 1.90566 1.73570 1.10156 1.44335 1.47439 1.54915 1.00008 1.26560 1.21634 0.78165 0.87035 0.78620 1.90513 1.39018 1.73602 1.42329 1.17928 0.96973 0.86931 0.94102 0.90362 1.20992 0.92894 1.32908 1.10866 0.90109 1.25651 0.97290 0.95508 0.98219 1.70264 1.02645 1.40595 1.37117 0.85743 0.78879 0.78352 0.80267 1.17606 1.21840 1.21213 1.19845 0.96574 0.94137 0.93410 1.21060 1.01085 0.98169 0.93380 1.21187 1.00707 0.96645 0.97944 1.21196 1.00804 0.95427 0.98204 1.21330 1.01706 1.00798 0.93142 1.21131 0.95613 0.95593 0.97697 0.92123 0.88442 0.92561 0.93005 0.87207 0.91838 0.92950 0.88244 0.93897 0.74779 0.93483 0.88462 0.85287 0.84311 0.85368 0.86632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 8.51 71.98 0.61 -3.16 16 2 C 0.07 1.90 1.13 -10.79 -0.01 1.89 16 3 C -0.13 -3.03 8.84 71.98 0.64 -2.40 16 4 C -0.17 -4.63 8.51 71.98 0.61 -4.01 16 5 O -0.18 -7.66 10.63 -21.38 -0.23 -7.89 16 6 N -0.59 -25.36 5.49 -173.52 -0.95 -26.31 16 7 C 0.56 28.18 5.60 87.66 0.49 28.67 16 8 O -0.58 -34.04 14.36 14.34 0.21 -33.84 16 9 C 0.06 2.97 2.78 -13.03 -0.04 2.93 16 10 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 11 C -0.54 -25.89 7.12 25.60 0.18 -25.71 16 12 H 0.08 3.64 7.81 -2.91 -0.02 3.61 16 13 C 0.04 1.94 3.99 84.65 0.34 2.27 16 14 N -0.87 -49.26 10.88 21.45 0.23 -49.03 16 15 Si 0.94 40.40 29.54 68.60 2.03 42.43 16 16 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 17 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 19 C -0.04 -1.88 4.52 -19.87 -0.09 -1.97 16 20 C -0.12 -5.53 8.21 22.27 0.18 -5.35 16 21 C -0.15 -5.91 10.05 22.27 0.22 -5.69 16 22 C -0.14 -5.18 10.05 22.27 0.22 -4.96 16 23 C -0.15 -6.13 10.05 22.27 0.22 -5.91 16 24 C -0.08 -3.84 8.20 22.27 0.18 -3.66 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 1.33 6.97 -2.39 -0.02 1.31 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.54 6.96 -2.39 -0.02 1.53 16 32 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.41 15.40 6.31 -92.70 -0.58 14.82 16 35 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 36 H 0.10 4.63 7.01 -2.91 -0.02 4.61 16 37 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 38 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 39 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 40 H 0.12 5.57 6.02 -2.91 -0.02 5.55 16 Total: -1.00 -68.49 328.48 5.50 -62.99 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: 0.45 Total: 38.69 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 3.77 Total: -27.04 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -0.72 Total: -75.34 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.02 Total: -41.73 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -68.49 5.50 -62.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183030283.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.447 kcal (2) G-P(sol) polarization free energy of solvation -68.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds