Wall clock time and date at job start Mon Mar 30 2020 01:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47359 * 2 1 4 4 C 1.52998 * 109.47045 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46789 * 180.02562 * 4 3 2 6 6 C 1.36870 * 120.00065 * 269.99956 * 5 4 3 7 7 H 1.07999 * 120.00060 * 139.32511 * 6 5 4 8 8 C 1.39056 * 119.99889 * 319.32929 * 6 5 4 9 9 N 1.31361 * 119.99948 * 161.49817 * 8 6 5 10 10 Si 1.86796 * 120.00058 * 341.49568 * 8 6 5 11 11 H 1.48498 * 109.47122 * 95.26607 * 10 8 6 12 12 H 1.48502 * 109.46941 * 215.26788 * 10 8 6 13 13 H 1.48505 * 109.46985 * 335.26278 * 10 8 6 14 14 C 1.34772 * 120.00278 * 90.00450 * 5 4 3 15 15 O 1.21598 * 119.99830 * 3.69849 * 14 5 4 16 16 C 1.47731 * 120.00178 * 183.70400 * 14 5 4 17 17 C 1.39644 * 120.14940 * 147.77522 * 16 14 5 18 18 C 1.37939 * 119.84181 * 180.02562 * 17 16 14 19 19 C 1.38371 * 120.15532 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.84959 * 179.97438 * 19 18 17 21 21 O 1.42911 * 109.46961 * 89.99920 * 20 19 18 22 22 C 1.38381 * 120.30501 * 0.25213 * 19 18 17 23 23 C 1.37938 * 120.14801 * 359.49104 * 22 19 18 24 24 H 1.09003 * 109.46784 * 59.99752 * 1 2 3 25 25 H 1.08992 * 109.47224 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47274 * 300.00349 * 1 2 3 27 27 H 1.08998 * 109.47274 * 239.99651 * 2 1 3 28 28 H 1.08999 * 109.47072 * 119.99845 * 2 1 3 29 29 H 1.08996 * 109.46696 * 59.99629 * 3 2 1 30 30 H 1.08999 * 109.46902 * 299.99949 * 3 2 1 31 31 H 1.08996 * 109.47312 * 60.00452 * 4 3 2 32 32 H 1.08996 * 109.47156 * 299.99742 * 4 3 2 33 33 H 0.96996 * 120.00091 * 179.97438 * 9 8 6 34 34 H 1.08000 * 120.08146 * 359.97438 * 17 16 14 35 35 H 1.08007 * 119.92131 * 179.97438 * 18 17 16 36 36 H 1.09001 * 109.47006 * 330.00205 * 20 19 18 37 37 H 1.08996 * 109.47197 * 209.99843 * 20 19 18 38 38 H 0.96700 * 113.99533 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.92728 * 179.74645 * 22 19 18 40 40 H 1.07998 * 120.07571 * 180.25225 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.2870 3.4692 -1.1838 7 1 4.0071 4.5062 -1.2966 8 6 4.8796 2.7899 -2.2425 9 7 4.7761 3.2601 -3.4647 10 14 5.8229 1.2088 -1.9268 11 1 4.9282 0.0452 -2.1522 12 1 6.9807 1.1298 -2.8533 13 1 6.3096 1.1945 -0.5239 14 6 4.2826 3.4586 1.1687 15 8 4.1443 2.8642 2.2204 16 6 4.6963 4.8768 1.1706 17 6 4.3060 5.7199 2.2131 18 6 4.6955 7.0432 2.2083 19 6 5.4715 7.5355 1.1739 20 6 5.8926 8.9825 1.1752 21 8 7.1413 9.1146 1.8577 22 6 5.8580 6.7068 0.1352 23 6 5.4800 5.3802 0.1301 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 5.1898 2.7864 -4.2032 34 1 3.7000 5.3370 3.0209 35 1 4.3940 7.6965 3.0138 36 1 5.1360 9.5806 1.6829 37 1 6.0015 9.3301 0.1479 38 1 7.4736 10.0218 1.8975 39 1 6.4603 7.0985 -0.6711 40 1 5.7857 4.7335 -0.6790 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186106456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:54 Heat of formation + Delta-G solvation = -58.543768 kcal Electronic energy + Delta-G solvation = -21625.326907 eV Core-core repulsion = 18405.169917 eV Total energy + Delta-G solvation = -3220.156990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.59482 -38.14509 -36.35776 -35.53671 -34.15228 -31.98929 -31.38313 -30.41321 -28.61505 -26.13506 -24.95475 -23.45790 -21.97163 -21.24985 -20.72328 -19.20853 -17.67543 -17.40155 -16.35197 -15.57649 -15.39278 -14.84783 -14.82935 -14.58465 -14.09055 -13.53418 -13.38995 -13.16145 -13.12814 -12.82240 -12.58406 -12.40990 -12.38821 -11.85989 -11.67264 -11.42226 -11.18959 -10.85101 -10.70647 -10.63386 -10.59078 -10.32013 -10.07538 -9.99081 -9.79531 -9.25640 -8.69667 -8.35844 -8.19084 -7.80556 -6.56396 -4.17452 1.51295 2.01815 3.00060 3.16641 3.25444 3.62446 4.04440 4.23603 4.36729 4.66674 4.91334 5.12121 5.17957 5.34042 5.36433 5.44350 5.50481 5.55788 5.61977 5.75015 5.85998 6.05356 6.09789 6.13389 6.20331 6.22017 6.24066 6.36325 6.46749 6.48494 6.64878 6.75496 6.86616 6.93356 7.08211 7.21165 7.29012 7.54350 7.62526 7.98055 8.16839 8.83774 9.24270 9.58961 10.51674 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018070 B = 0.005595 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.121330 B = 5003.515186 C = 5950.859185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.102 3.898 5 N -0.456 5.456 6 C -0.348 4.348 7 H 0.112 0.888 8 C 0.068 3.932 9 N -0.855 5.855 10 Si 0.874 3.126 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.260 1.260 14 C 0.519 3.481 15 O -0.594 6.594 16 C -0.094 4.094 17 C -0.083 4.083 18 C -0.122 4.122 19 C -0.092 4.092 20 C 0.119 3.881 21 O -0.567 6.567 22 C -0.119 4.119 23 C -0.069 4.069 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.277 0.723 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.374 0.626 39 H 0.120 0.880 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 5.191 4.270 6.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.164 4.164 4 C -0.021 4.021 5 N -0.175 5.175 6 C -0.475 4.475 7 H 0.129 0.871 8 C -0.141 4.141 9 N -0.489 5.489 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.213 1.213 13 H -0.184 1.184 14 C 0.309 3.691 15 O -0.479 6.479 16 C -0.097 4.097 17 C -0.102 4.102 18 C -0.140 4.140 19 C -0.093 4.093 20 C 0.042 3.958 21 O -0.372 6.372 22 C -0.137 4.137 23 C -0.087 4.087 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.221 0.779 39 H 0.138 0.862 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.354 4.205 4.595 6.374 hybrid contribution 0.464 -0.136 -0.297 0.567 sum -0.891 4.069 4.298 5.985 Atomic orbital electron populations 1.21738 0.96134 1.00897 1.01763 1.21482 0.95618 0.97413 1.01634 1.21846 0.95873 0.96054 1.02607 1.21661 0.94093 0.85149 1.01209 1.43580 1.56511 1.11752 1.05621 1.19207 1.40992 0.99313 0.87957 0.87080 1.25348 0.95971 0.98085 0.94660 1.69706 1.40331 1.40253 0.98632 0.86946 0.80087 0.83272 0.79571 1.19880 1.21300 1.18354 1.18303 0.80091 0.86952 0.83764 1.90630 1.57403 1.68120 1.31776 1.19988 0.99910 0.94140 0.95664 1.21128 0.98884 0.92747 0.97456 1.20750 0.99923 0.95375 0.97975 1.19644 0.99114 0.94604 0.95904 1.20996 0.85378 0.93557 0.95845 1.86619 1.38310 1.32789 1.79503 1.21037 1.00317 0.94086 0.98249 1.22430 0.93563 0.95252 0.97438 0.92762 0.93259 0.92913 0.92252 0.92254 0.92071 0.91120 0.91740 0.91155 0.91274 0.85822 0.86512 0.93142 0.92872 0.77928 0.86225 0.81511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.95 5.93 -26.73 -0.16 -2.11 16 3 C -0.13 -2.41 5.54 -26.73 -0.15 -2.56 16 4 C 0.10 2.24 4.20 -4.04 -0.02 2.22 16 5 N -0.46 -10.96 2.13 -115.93 -0.25 -11.20 16 6 C -0.35 -8.68 6.58 -15.00 -0.10 -8.78 16 7 H 0.11 2.92 6.38 -52.49 -0.33 2.59 16 8 C 0.07 1.70 5.32 -17.45 -0.09 1.61 16 9 N -0.85 -22.42 13.95 55.50 0.77 -21.65 16 10 Si 0.87 19.98 24.92 -169.99 -4.24 15.75 16 11 H -0.27 -5.99 6.73 56.52 0.38 -5.61 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.26 -6.14 7.11 56.52 0.40 -5.73 16 14 C 0.52 12.58 7.41 -12.38 -0.09 12.49 16 15 O -0.59 -15.37 16.32 5.28 0.09 -15.28 16 16 C -0.09 -2.06 5.52 -104.97 -0.58 -2.64 16 17 C -0.08 -1.59 9.60 -39.17 -0.38 -1.97 16 18 C -0.12 -2.03 9.68 -39.64 -0.38 -2.42 16 19 C -0.09 -1.52 5.52 -104.52 -0.58 -2.09 16 20 C 0.12 1.50 7.17 36.01 0.26 1.75 16 21 O -0.57 -7.21 13.64 -35.23 -0.48 -7.69 16 22 C -0.12 -2.14 9.68 -39.64 -0.38 -2.52 16 23 C -0.07 -1.43 7.75 -39.17 -0.30 -1.74 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.06 1.44 3.39 -51.93 -0.18 1.26 16 32 H 0.07 1.55 7.37 -51.93 -0.38 1.17 16 33 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.12 2.28 7.96 -52.49 -0.42 1.86 16 35 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 37 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 38 H 0.37 2.64 9.12 45.56 0.42 3.06 16 39 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.17 3.77 5.40 -52.49 -0.28 3.49 16 LS Contribution 328.92 15.07 4.96 4.96 Total: -1.00 -29.88 328.92 -6.71 -36.59 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -4.98 Total: 8.90 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -2.58 Total: -10.36 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.53 Total: -32.85 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.39 Total: -22.98 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.24 Total: 15.75 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.88 -6.71 -36.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186106456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.954 kcal (2) G-P(sol) polarization free energy of solvation -29.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds