Wall clock time and date at job start Mon Mar 30 2020 01:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47359 * 2 1 4 4 C 1.52998 * 109.47045 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46789 * 180.02562 * 4 3 2 6 6 C 1.36870 * 120.00065 * 269.99956 * 5 4 3 7 7 H 1.07999 * 120.00060 * 139.32511 * 6 5 4 8 8 C 1.39056 * 119.99889 * 319.32929 * 6 5 4 9 9 N 1.31361 * 119.99948 * 161.49817 * 8 6 5 10 10 Si 1.86796 * 120.00058 * 341.49568 * 8 6 5 11 11 H 1.48498 * 109.47122 * 95.26607 * 10 8 6 12 12 H 1.48502 * 109.46941 * 215.26788 * 10 8 6 13 13 H 1.48505 * 109.46985 * 335.26278 * 10 8 6 14 14 C 1.34772 * 120.00278 * 90.00450 * 5 4 3 15 15 O 1.21598 * 119.99830 * 3.69849 * 14 5 4 16 16 C 1.47731 * 120.00178 * 183.70400 * 14 5 4 17 17 C 1.39644 * 120.14940 * 147.77522 * 16 14 5 18 18 C 1.37939 * 119.84181 * 180.02562 * 17 16 14 19 19 C 1.38371 * 120.15532 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.84959 * 179.97438 * 19 18 17 21 21 O 1.42911 * 109.46961 * 89.99920 * 20 19 18 22 22 C 1.38381 * 120.30501 * 0.25213 * 19 18 17 23 23 C 1.37938 * 120.14801 * 359.49104 * 22 19 18 24 24 H 1.09003 * 109.46784 * 59.99752 * 1 2 3 25 25 H 1.08992 * 109.47224 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47274 * 300.00349 * 1 2 3 27 27 H 1.08998 * 109.47274 * 239.99651 * 2 1 3 28 28 H 1.08999 * 109.47072 * 119.99845 * 2 1 3 29 29 H 1.08996 * 109.46696 * 59.99629 * 3 2 1 30 30 H 1.08999 * 109.46902 * 299.99949 * 3 2 1 31 31 H 1.08996 * 109.47312 * 60.00452 * 4 3 2 32 32 H 1.08996 * 109.47156 * 299.99742 * 4 3 2 33 33 H 0.96996 * 120.00091 * 179.97438 * 9 8 6 34 34 H 1.08000 * 120.08146 * 359.97438 * 17 16 14 35 35 H 1.08007 * 119.92131 * 179.97438 * 18 17 16 36 36 H 1.09001 * 109.47006 * 330.00205 * 20 19 18 37 37 H 1.08996 * 109.47197 * 209.99843 * 20 19 18 38 38 H 0.96700 * 113.99533 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.92728 * 179.74645 * 22 19 18 40 40 H 1.07998 * 120.07571 * 180.25225 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.2870 3.4692 -1.1838 7 1 4.0071 4.5062 -1.2966 8 6 4.8796 2.7899 -2.2425 9 7 4.7761 3.2601 -3.4647 10 14 5.8229 1.2088 -1.9268 11 1 4.9282 0.0452 -2.1522 12 1 6.9807 1.1298 -2.8533 13 1 6.3096 1.1945 -0.5239 14 6 4.2826 3.4586 1.1687 15 8 4.1443 2.8642 2.2204 16 6 4.6963 4.8768 1.1706 17 6 4.3060 5.7199 2.2131 18 6 4.6955 7.0432 2.2083 19 6 5.4715 7.5355 1.1739 20 6 5.8926 8.9825 1.1752 21 8 7.1413 9.1146 1.8577 22 6 5.8580 6.7068 0.1352 23 6 5.4800 5.3802 0.1301 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 5.1898 2.7864 -4.2032 34 1 3.7000 5.3370 3.0209 35 1 4.3940 7.6965 3.0138 36 1 5.1360 9.5806 1.6829 37 1 6.0015 9.3301 0.1479 38 1 7.4736 10.0218 1.8975 39 1 6.4603 7.0985 -0.6711 40 1 5.7857 4.7335 -0.6790 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186106456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:54 Heat of formation + Delta-G solvation = -78.000640 kcal Electronic energy + Delta-G solvation = -21626.170620 eV Core-core repulsion = 18405.169917 eV Total energy + Delta-G solvation = -3221.000703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.30425 -39.63710 -37.51036 -37.23872 -35.71760 -33.91051 -32.77272 -31.87463 -30.09166 -27.55960 -26.73398 -24.91704 -23.44345 -22.69259 -22.15331 -21.00350 -19.46262 -18.30537 -18.16200 -17.30193 -16.79825 -16.34536 -16.26759 -16.25741 -15.69869 -15.06651 -14.74600 -14.63896 -14.59095 -14.43069 -14.11202 -13.96388 -13.74303 -13.38229 -13.22564 -13.03523 -12.91005 -12.24405 -12.16631 -12.07481 -12.02716 -11.82116 -11.80804 -11.47812 -11.11707 -10.90908 -10.58473 -9.89085 -9.70001 -9.66490 -8.53489 -6.16034 0.01012 0.55106 1.14962 1.28306 1.38453 1.89412 2.13557 2.50576 2.75649 3.03719 3.63204 3.86143 3.95522 3.99961 4.06539 4.11868 4.21326 4.25698 4.31085 4.40882 4.49954 4.55742 4.62177 4.72358 4.82572 4.85317 4.90162 5.01756 5.02677 5.18439 5.20228 5.31501 5.38519 5.44170 5.47211 5.62727 5.67803 6.00331 6.07443 6.21014 6.87787 6.99183 7.30586 7.67475 8.57897 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018070 B = 0.005595 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.121330 B = 5003.515186 C = 5950.859185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.116 4.116 4 C 0.095 3.905 5 N -0.464 5.464 6 C -0.339 4.339 7 H 0.092 0.908 8 C 0.039 3.961 9 N -0.886 5.886 10 Si 0.916 3.084 11 H -0.255 1.255 12 H -0.280 1.280 13 H -0.276 1.276 14 C 0.511 3.489 15 O -0.618 6.618 16 C -0.129 4.129 17 C -0.089 4.089 18 C -0.114 4.114 19 C -0.085 4.085 20 C 0.122 3.878 21 O -0.589 6.589 22 C -0.123 4.123 23 C -0.083 4.083 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.282 0.718 34 H 0.126 0.874 35 H 0.155 0.845 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.400 0.600 39 H 0.137 0.863 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.381 6.333 4.947 8.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C -0.154 4.154 4 C -0.027 4.027 5 N -0.183 5.183 6 C -0.466 4.466 7 H 0.109 0.891 8 C -0.167 4.167 9 N -0.522 5.522 10 Si 0.742 3.258 11 H -0.180 1.180 12 H -0.206 1.206 13 H -0.201 1.201 14 C 0.302 3.698 15 O -0.506 6.506 16 C -0.132 4.132 17 C -0.108 4.108 18 C -0.132 4.132 19 C -0.086 4.086 20 C 0.045 3.955 21 O -0.398 6.398 22 C -0.141 4.141 23 C -0.102 4.102 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.144 0.856 35 H 0.172 0.828 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.251 0.749 39 H 0.155 0.845 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.494 5.359 5.257 7.655 hybrid contribution 0.550 -0.338 -0.432 0.777 sum -0.944 5.021 4.825 7.027 Atomic orbital electron populations 1.21710 0.94063 1.02504 1.01856 1.21484 0.97426 0.94704 1.02227 1.21755 0.93790 0.98481 1.01394 1.21805 0.96000 0.84119 1.00779 1.43716 1.56737 1.12476 1.05336 1.18992 1.40733 0.98677 0.88197 0.89103 1.25721 0.96368 1.00193 0.94385 1.69744 1.41573 1.41639 0.99229 0.86280 0.79568 0.81536 0.78394 1.18017 1.20614 1.20096 1.18806 0.79444 0.88127 0.83396 1.90582 1.58616 1.69021 1.32373 1.19980 1.02211 0.93372 0.97655 1.21279 0.99024 0.93825 0.96678 1.21158 0.98688 0.94505 0.98811 1.20176 0.97263 0.96719 0.94415 1.21019 0.86279 0.90691 0.97523 1.86536 1.38297 1.35464 1.79501 1.21257 1.00329 0.93014 0.99510 1.22167 0.94717 0.96502 0.96802 0.92839 0.90882 0.92718 0.91857 0.91459 0.93045 0.92433 0.91928 0.91574 0.90795 0.85599 0.82772 0.90213 0.91147 0.74929 0.84490 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.91 71.98 0.71 -2.90 16 2 C -0.12 -3.67 5.93 30.60 0.18 -3.49 16 3 C -0.12 -4.51 5.54 30.59 0.17 -4.34 16 4 C 0.10 4.28 4.20 86.38 0.36 4.64 16 5 N -0.46 -23.12 2.13 -638.95 -1.36 -24.48 16 6 C -0.34 -17.57 6.58 84.10 0.55 -17.02 16 7 H 0.09 5.04 6.38 -2.91 -0.02 5.02 16 8 C 0.04 2.00 5.32 84.96 0.45 2.45 16 9 N -0.89 -47.36 13.95 21.68 0.30 -47.05 16 10 Si 0.92 41.59 24.92 68.60 1.71 43.30 16 11 H -0.25 -10.77 6.73 99.48 0.67 -10.10 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 14 C 0.51 25.74 7.41 86.75 0.64 26.38 16 15 O -0.62 -33.05 16.32 -4.02 -0.07 -33.11 16 16 C -0.13 -5.82 5.52 -20.09 -0.11 -5.93 16 17 C -0.09 -3.39 9.60 22.54 0.22 -3.18 16 18 C -0.11 -3.51 9.68 22.23 0.22 -3.30 16 19 C -0.09 -2.59 5.52 -19.80 -0.11 -2.70 16 20 C 0.12 2.54 7.17 71.24 0.51 3.06 16 21 O -0.59 -12.69 13.64 -148.98 -2.03 -14.72 16 22 C -0.12 -4.35 9.68 22.23 0.22 -4.13 16 23 C -0.08 -3.59 7.75 22.54 0.17 -3.41 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.06 2.81 3.39 -2.39 -0.01 2.80 16 32 H 0.07 2.99 7.37 -2.39 -0.02 2.97 16 33 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 34 H 0.13 4.64 7.96 -2.91 -0.02 4.61 16 35 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 36 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 37 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 38 H 0.40 4.01 9.12 -74.06 -0.68 3.33 16 39 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 40 H 0.14 6.71 5.40 -2.91 -0.02 6.69 16 Total: -1.00 -65.94 328.92 3.08 -62.87 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.33 Total: 27.06 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 4.19 Total: -13.85 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -1.06 Total: -71.53 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -2.10 Total: -47.83 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.71 Total: 43.30 kcal Total: -65.94 3.08 -62.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186106456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.135 kcal (2) G-P(sol) polarization free energy of solvation -65.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds