Wall clock time and date at job start Mon Mar 30 2020 01:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47448 * 2 1 4 4 C 1.52999 * 109.47120 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46814 * 179.97438 * 4 3 2 6 6 C 1.36907 * 120.00014 * 269.99394 * 5 4 3 7 7 H 1.07998 * 119.99864 * 136.13984 * 6 5 4 8 8 C 1.39015 * 120.00239 * 316.14832 * 6 5 4 9 9 N 1.31377 * 120.00049 * 169.50142 * 8 6 5 10 10 Si 1.86800 * 119.99946 * 349.49719 * 8 6 5 11 11 H 1.48499 * 109.47360 * 90.44510 * 10 8 6 12 12 H 1.48502 * 109.47414 * 210.44624 * 10 8 6 13 13 H 1.48508 * 109.47178 * 330.44463 * 10 8 6 14 14 C 1.34781 * 120.00037 * 90.00138 * 5 4 3 15 15 O 1.21617 * 119.99875 * 4.41476 * 14 5 4 16 16 C 1.47495 * 119.99665 * 184.41960 * 14 5 4 17 17 C 1.39818 * 120.09700 * 316.61732 * 16 14 5 18 18 C 1.37668 * 119.90356 * 179.97438 * 17 16 14 19 19 C 1.39025 * 120.09842 * 359.97438 * 18 17 16 20 20 O 1.35712 * 119.90805 * 180.02562 * 19 18 17 21 21 C 1.38993 * 120.18427 * 0.28036 * 19 18 17 22 22 C 1.37706 * 120.09926 * 359.44537 * 21 19 18 23 23 C 1.50697 * 120.05382 * 180.25291 * 22 21 19 24 24 H 1.08992 * 109.46936 * 300.00632 * 1 2 3 25 25 H 1.08998 * 109.46690 * 60.00347 * 1 2 3 26 26 H 1.09003 * 109.47284 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47283 * 239.99214 * 2 1 3 28 28 H 1.09009 * 109.47149 * 119.99615 * 2 1 3 29 29 H 1.08998 * 109.46996 * 59.99399 * 3 2 1 30 30 H 1.08998 * 109.46891 * 299.99529 * 3 2 1 31 31 H 1.08998 * 109.47587 * 59.99870 * 4 3 2 32 32 H 1.08998 * 109.46943 * 299.99607 * 4 3 2 33 33 H 0.97012 * 119.99960 * 179.97438 * 9 8 6 34 34 H 1.08000 * 120.04568 * 359.97438 * 17 16 14 35 35 H 1.08001 * 119.94669 * 179.97438 * 18 17 16 36 36 H 0.96700 * 114.00050 * 90.00525 * 20 19 18 37 37 H 1.08010 * 119.94979 * 179.72366 * 21 19 18 38 38 H 1.08996 * 109.47108 * 273.80399 * 23 22 21 39 39 H 1.09007 * 109.46592 * 33.80146 * 23 22 21 40 40 H 1.08995 * 109.47280 * 153.80187 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2872 3.4682 -1.1859 7 1 3.9610 4.4893 -1.3172 8 6 4.9393 2.8084 -2.2212 9 7 4.9780 3.3440 -3.4203 10 14 5.7608 1.1603 -1.9075 11 1 4.7905 0.0663 -2.1665 12 1 6.9294 1.0096 -2.8113 13 1 6.2155 1.0946 -0.4953 14 6 4.2826 3.4596 1.1670 15 8 4.1568 2.8625 2.2189 16 6 4.6804 4.8799 1.1681 17 6 5.6370 5.3409 0.2585 18 6 6.0049 6.6675 0.2627 19 6 5.4264 7.5486 1.1692 20 8 5.7915 8.8556 1.1696 21 6 4.4789 7.0934 2.0787 22 6 4.1009 5.7693 2.0777 23 6 3.0693 5.2781 3.0603 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.6769 1.9562 -0.8900 31 1 3.9339 0.9284 -0.8891 32 1 3.9330 0.9287 0.8909 33 1 5.4334 2.8837 -4.1427 34 1 6.0866 4.6572 -0.4463 35 1 6.7441 7.0242 -0.4393 36 1 5.2575 9.4134 0.5876 37 1 4.0351 7.7804 2.7842 38 1 3.5583 5.0100 3.9968 39 1 2.3389 6.0660 3.2444 40 1 2.5646 4.4033 2.6505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186180459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:57 Heat of formation + Delta-G solvation = -58.894910 kcal Electronic energy + Delta-G solvation = -22083.933421 eV Core-core repulsion = 18863.761204 eV Total energy + Delta-G solvation = -3220.172217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.83741 -38.49707 -36.39539 -35.45408 -34.16025 -32.07373 -31.88681 -30.00260 -28.31770 -26.60942 -24.97318 -23.73040 -22.32629 -21.10416 -20.74948 -19.28251 -17.72621 -17.51090 -16.35496 -15.78199 -15.09997 -14.92974 -14.86640 -14.61116 -14.00265 -13.52377 -13.21770 -13.10129 -12.96970 -12.75405 -12.62670 -12.39663 -12.08968 -11.97881 -11.58783 -11.44133 -11.22870 -11.15995 -11.13926 -10.72291 -10.67126 -10.38215 -10.10249 -10.05206 -9.76629 -9.23716 -8.70600 -8.31807 -8.01610 -7.79769 -6.52332 -4.21856 1.47805 1.88084 2.98865 3.15663 3.22075 3.56464 4.03155 4.12700 4.39170 4.56027 4.87960 5.29190 5.31625 5.34037 5.37799 5.47443 5.63199 5.71337 5.80345 5.88877 6.06664 6.08804 6.10471 6.13983 6.16882 6.18635 6.28802 6.35769 6.40135 6.45083 6.63676 6.72623 6.80426 6.84829 6.92405 7.12167 7.27615 7.35029 7.92651 7.99960 8.17944 8.85059 9.23100 9.57193 10.56530 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.006925 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.597441 B = 4042.534218 C = 5228.752676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.125 4.125 4 C 0.098 3.902 5 N -0.460 5.460 6 C -0.341 4.341 7 H 0.107 0.893 8 C 0.066 3.934 9 N -0.863 5.863 10 Si 0.880 3.120 11 H -0.272 1.272 12 H -0.289 1.289 13 H -0.261 1.261 14 C 0.526 3.474 15 O -0.587 6.587 16 C -0.106 4.106 17 C -0.034 4.034 18 C -0.166 4.166 19 C 0.109 3.891 20 O -0.503 6.503 21 C -0.165 4.165 22 C -0.035 4.035 23 C -0.108 4.108 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.276 0.724 34 H 0.151 0.849 35 H 0.126 0.874 36 H 0.386 0.614 37 H 0.123 0.877 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.519 2.277 4.747 6.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.164 4.164 4 C -0.024 4.024 5 N -0.179 5.179 6 C -0.468 4.468 7 H 0.124 0.876 8 C -0.141 4.141 9 N -0.498 5.498 10 Si 0.709 3.291 11 H -0.199 1.199 12 H -0.216 1.216 13 H -0.185 1.185 14 C 0.316 3.684 15 O -0.472 6.472 16 C -0.109 4.109 17 C -0.052 4.052 18 C -0.185 4.185 19 C 0.065 3.935 20 O -0.313 6.313 21 C -0.184 4.184 22 C -0.036 4.036 23 C -0.164 4.164 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.169 0.831 35 H 0.144 0.856 36 H 0.241 0.759 37 H 0.141 0.859 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.097 1.756 5.429 6.493 hybrid contribution 0.113 -0.555 -0.677 0.883 sum -2.984 1.201 4.752 5.738 Atomic orbital electron populations 1.21738 0.96117 1.00922 1.01754 1.21486 0.95623 0.97413 1.01655 1.21847 0.95901 0.96054 1.02555 1.21712 0.94073 0.85423 1.01213 1.43623 1.56953 1.11651 1.05700 1.19107 1.38119 1.00578 0.89021 0.87604 1.25390 0.95521 0.98246 0.94954 1.69648 1.40405 1.39385 1.00405 0.86894 0.79199 0.83715 0.79322 1.19870 1.21589 1.18537 1.18201 0.79643 0.86724 0.83798 1.90642 1.56842 1.68073 1.31680 1.19837 0.99527 0.94077 0.97429 1.21633 0.93983 0.94917 0.94688 1.21332 1.02807 0.94202 1.00126 1.18595 0.95296 0.83822 0.95783 1.84736 1.60538 1.16976 1.69090 1.20991 0.99872 0.95799 1.01721 1.19743 0.96386 0.92140 0.95314 1.20771 0.96496 1.01159 0.98003 0.92903 0.92772 0.93248 0.92263 0.92235 0.92083 0.91172 0.91821 0.91104 0.91344 0.83136 0.85647 0.75896 0.85894 0.90946 0.92522 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.90 5.93 -26.73 -0.16 -2.06 16 3 C -0.13 -2.33 5.54 -26.73 -0.15 -2.48 16 4 C 0.10 2.12 4.12 -4.04 -0.02 2.10 16 5 N -0.46 -10.79 2.12 -116.01 -0.25 -11.04 16 6 C -0.34 -8.45 6.83 -15.00 -0.10 -8.55 16 7 H 0.11 2.81 7.03 -52.49 -0.37 2.44 16 8 C 0.07 1.67 5.44 -17.46 -0.09 1.57 16 9 N -0.86 -22.77 13.95 55.50 0.77 -21.99 16 10 Si 0.88 20.00 24.74 -169.99 -4.21 15.80 16 11 H -0.27 -5.93 6.66 56.52 0.38 -5.55 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.26 -6.08 7.07 56.52 0.40 -5.68 16 14 C 0.53 12.28 6.50 -12.49 -0.08 12.19 16 15 O -0.59 -14.40 14.73 5.26 0.08 -14.32 16 16 C -0.11 -2.25 5.24 -104.96 -0.55 -2.80 16 17 C -0.03 -0.69 7.92 -39.20 -0.31 -1.00 16 18 C -0.17 -2.95 9.97 -39.50 -0.39 -3.35 16 19 C 0.11 1.81 6.71 -39.01 -0.26 1.55 16 20 O -0.50 -7.04 13.49 -18.84 -0.25 -7.30 16 21 C -0.17 -2.73 9.64 -39.50 -0.38 -3.11 16 22 C -0.03 -0.65 5.90 -104.24 -0.62 -1.26 16 23 C -0.11 -1.81 9.04 36.00 0.33 -1.48 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.06 1.40 3.10 -51.93 -0.16 1.24 16 32 H 0.07 1.53 7.37 -51.93 -0.38 1.15 16 33 H 0.28 6.86 8.31 -40.81 -0.34 6.53 16 34 H 0.15 3.29 6.44 -52.49 -0.34 2.96 16 35 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 36 H 0.39 3.49 9.06 45.56 0.41 3.90 16 37 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 40 H 0.07 1.40 6.35 -51.93 -0.33 1.07 16 LS Contribution 325.59 15.07 4.91 4.91 Total: -1.00 -28.67 325.59 -6.35 -35.02 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -4.98 Total: 9.15 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.42 Total: -10.23 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.53 Total: -33.03 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.18 Total: -21.62 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.21 Total: 15.80 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.67 -6.35 -35.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186180459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.874 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds