Wall clock time and date at job start Mon Mar 30 2020 01:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47448 * 2 1 4 4 C 1.52999 * 109.47120 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46814 * 179.97438 * 4 3 2 6 6 C 1.36907 * 120.00014 * 269.99394 * 5 4 3 7 7 H 1.07998 * 119.99864 * 136.13984 * 6 5 4 8 8 C 1.39015 * 120.00239 * 316.14832 * 6 5 4 9 9 N 1.31377 * 120.00049 * 169.50142 * 8 6 5 10 10 Si 1.86800 * 119.99946 * 349.49719 * 8 6 5 11 11 H 1.48499 * 109.47360 * 90.44510 * 10 8 6 12 12 H 1.48502 * 109.47414 * 210.44624 * 10 8 6 13 13 H 1.48508 * 109.47178 * 330.44463 * 10 8 6 14 14 C 1.34781 * 120.00037 * 90.00138 * 5 4 3 15 15 O 1.21617 * 119.99875 * 4.41476 * 14 5 4 16 16 C 1.47495 * 119.99665 * 184.41960 * 14 5 4 17 17 C 1.39818 * 120.09700 * 316.61732 * 16 14 5 18 18 C 1.37668 * 119.90356 * 179.97438 * 17 16 14 19 19 C 1.39025 * 120.09842 * 359.97438 * 18 17 16 20 20 O 1.35712 * 119.90805 * 180.02562 * 19 18 17 21 21 C 1.38993 * 120.18427 * 0.28036 * 19 18 17 22 22 C 1.37706 * 120.09926 * 359.44537 * 21 19 18 23 23 C 1.50697 * 120.05382 * 180.25291 * 22 21 19 24 24 H 1.08992 * 109.46936 * 300.00632 * 1 2 3 25 25 H 1.08998 * 109.46690 * 60.00347 * 1 2 3 26 26 H 1.09003 * 109.47284 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47283 * 239.99214 * 2 1 3 28 28 H 1.09009 * 109.47149 * 119.99615 * 2 1 3 29 29 H 1.08998 * 109.46996 * 59.99399 * 3 2 1 30 30 H 1.08998 * 109.46891 * 299.99529 * 3 2 1 31 31 H 1.08998 * 109.47587 * 59.99870 * 4 3 2 32 32 H 1.08998 * 109.46943 * 299.99607 * 4 3 2 33 33 H 0.97012 * 119.99960 * 179.97438 * 9 8 6 34 34 H 1.08000 * 120.04568 * 359.97438 * 17 16 14 35 35 H 1.08001 * 119.94669 * 179.97438 * 18 17 16 36 36 H 0.96700 * 114.00050 * 90.00525 * 20 19 18 37 37 H 1.08010 * 119.94979 * 179.72366 * 21 19 18 38 38 H 1.08996 * 109.47108 * 273.80399 * 23 22 21 39 39 H 1.09007 * 109.46592 * 33.80146 * 23 22 21 40 40 H 1.08995 * 109.47280 * 153.80187 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2872 3.4682 -1.1859 7 1 3.9610 4.4893 -1.3172 8 6 4.9393 2.8084 -2.2212 9 7 4.9780 3.3440 -3.4203 10 14 5.7608 1.1603 -1.9075 11 1 4.7905 0.0663 -2.1665 12 1 6.9294 1.0096 -2.8113 13 1 6.2155 1.0946 -0.4953 14 6 4.2826 3.4596 1.1670 15 8 4.1568 2.8625 2.2189 16 6 4.6804 4.8799 1.1681 17 6 5.6370 5.3409 0.2585 18 6 6.0049 6.6675 0.2627 19 6 5.4264 7.5486 1.1692 20 8 5.7915 8.8556 1.1696 21 6 4.4789 7.0934 2.0787 22 6 4.1009 5.7693 2.0777 23 6 3.0693 5.2781 3.0603 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.6769 1.9562 -0.8900 31 1 3.9339 0.9284 -0.8891 32 1 3.9330 0.9287 0.8909 33 1 5.4334 2.8837 -4.1427 34 1 6.0866 4.6572 -0.4463 35 1 6.7441 7.0242 -0.4393 36 1 5.2575 9.4134 0.5876 37 1 4.0351 7.7804 2.7842 38 1 3.5583 5.0100 3.9968 39 1 2.3389 6.0660 3.2444 40 1 2.5646 4.4033 2.6505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186180459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:57 Heat of formation + Delta-G solvation = -76.598944 kcal Electronic energy + Delta-G solvation = -22084.701125 eV Core-core repulsion = 18863.761204 eV Total energy + Delta-G solvation = -3220.939921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.44086 -40.00488 -37.78938 -37.11910 -35.67915 -33.89075 -33.38733 -31.44629 -29.75501 -28.02725 -26.85697 -25.19589 -23.80460 -22.50580 -22.14389 -21.04714 -19.31611 -18.91413 -18.16128 -17.42371 -16.60278 -16.53101 -16.25445 -16.14530 -15.62421 -15.03521 -14.74433 -14.68929 -14.52492 -14.16930 -14.05960 -13.94691 -13.50462 -13.43290 -13.19403 -12.98464 -12.86784 -12.56630 -12.55204 -12.17775 -12.10591 -11.89703 -11.78082 -11.50389 -11.34053 -11.04821 -10.53841 -9.79604 -9.64117 -9.44628 -8.49006 -6.19621 0.02366 0.45458 1.15282 1.28444 1.37194 1.87222 2.14232 2.51705 2.72925 3.01872 3.29644 3.85459 3.94351 3.99362 4.02338 4.11407 4.22896 4.29980 4.32545 4.51152 4.53309 4.73403 4.74031 4.80072 4.84191 4.90318 4.91380 5.03388 5.05443 5.20481 5.24840 5.32885 5.40080 5.41357 5.46326 5.50272 5.66406 5.89003 6.06150 6.21818 6.88212 6.91490 7.33403 7.70259 8.63185 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.006925 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.597441 B = 4042.534218 C = 5228.752676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.116 4.116 4 C 0.093 3.907 5 N -0.471 5.471 6 C -0.327 4.327 7 H 0.082 0.918 8 C 0.034 3.966 9 N -0.897 5.897 10 Si 0.923 3.077 11 H -0.254 1.254 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.524 3.476 15 O -0.605 6.605 16 C -0.143 4.143 17 C -0.047 4.047 18 C -0.172 4.172 19 C 0.129 3.871 20 O -0.501 6.501 21 C -0.158 4.158 22 C -0.039 4.039 23 C -0.103 4.103 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.280 0.720 34 H 0.124 0.876 35 H 0.140 0.860 36 H 0.412 0.588 37 H 0.158 0.842 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.181 3.092 5.764 7.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.154 4.154 4 C -0.029 4.029 5 N -0.190 5.190 6 C -0.455 4.455 7 H 0.099 0.901 8 C -0.170 4.170 9 N -0.534 5.534 10 Si 0.750 3.250 11 H -0.180 1.180 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.315 3.685 15 O -0.492 6.492 16 C -0.146 4.146 17 C -0.066 4.066 18 C -0.190 4.190 19 C 0.084 3.916 20 O -0.315 6.315 21 C -0.176 4.176 22 C -0.040 4.040 23 C -0.160 4.160 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.272 0.728 37 H 0.176 0.824 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.780 2.581 6.430 7.892 hybrid contribution 0.343 -0.629 -0.920 1.166 sum -3.437 1.952 5.510 6.781 Atomic orbital electron populations 1.21709 0.94060 1.02467 1.01889 1.21488 0.97420 0.94822 1.02166 1.21758 0.93783 0.98383 1.01486 1.21839 0.96011 0.84378 1.00719 1.43744 1.57527 1.12382 1.05385 1.18811 1.37563 0.99707 0.89371 0.90080 1.25798 0.95884 1.00620 0.94705 1.69705 1.41804 1.40784 1.01105 0.86207 0.78875 0.81583 0.78292 1.17997 1.21206 1.19883 1.18620 0.78791 0.87747 0.83371 1.90602 1.57637 1.68843 1.32073 1.19866 1.01500 0.93495 0.99763 1.21410 0.94671 0.95876 0.94668 1.21472 1.03316 0.93288 1.00957 1.18573 0.93799 0.84773 0.94418 1.84674 1.61233 1.15725 1.69870 1.21291 0.99303 0.95186 1.01849 1.20015 0.96462 0.92760 0.94781 1.20760 0.96623 1.01250 0.97339 0.92600 0.92868 0.90988 0.92045 0.91431 0.92767 0.92498 0.92224 0.91437 0.91021 0.85783 0.84200 0.72785 0.82427 0.90540 0.89014 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.91 71.98 0.71 -2.76 16 2 C -0.12 -3.57 5.93 30.60 0.18 -3.39 16 3 C -0.12 -4.34 5.54 30.59 0.17 -4.17 16 4 C 0.09 4.05 4.12 86.38 0.36 4.41 16 5 N -0.47 -22.79 2.12 -639.19 -1.36 -24.15 16 6 C -0.33 -16.80 6.83 84.09 0.57 -16.23 16 7 H 0.08 4.53 7.03 -2.91 -0.02 4.51 16 8 C 0.03 1.77 5.44 84.95 0.46 2.23 16 9 N -0.90 -48.42 13.95 21.67 0.30 -48.11 16 10 Si 0.92 41.70 24.74 68.60 1.70 43.40 16 11 H -0.25 -10.67 6.66 99.48 0.66 -10.01 16 12 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 13 H -0.27 -12.83 7.07 99.48 0.70 -12.13 16 14 C 0.52 25.16 6.50 86.68 0.56 25.73 16 15 O -0.61 -30.37 14.73 -4.09 -0.06 -30.43 16 16 C -0.14 -6.20 5.24 -20.08 -0.11 -6.31 16 17 C -0.05 -1.99 7.92 22.52 0.18 -1.81 16 18 C -0.17 -5.98 9.97 22.32 0.22 -5.76 16 19 C 0.13 3.92 6.71 22.64 0.15 4.07 16 20 O -0.50 -12.05 13.49 -90.34 -1.22 -13.27 16 21 C -0.16 -4.75 9.64 22.32 0.22 -4.53 16 22 C -0.04 -1.41 5.90 -19.62 -0.12 -1.53 16 23 C -0.10 -3.32 9.04 71.24 0.64 -2.67 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.06 2.63 3.10 -2.39 -0.01 2.62 16 32 H 0.07 2.96 7.37 -2.39 -0.02 2.94 16 33 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16 34 H 0.12 5.76 6.44 -2.91 -0.02 5.74 16 35 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.41 5.67 9.06 -74.06 -0.67 5.00 16 37 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 38 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.09 2.25 8.11 -2.38 -0.02 2.23 16 40 H 0.05 1.81 6.35 -2.39 -0.02 1.79 16 Total: -1.00 -62.84 325.59 3.90 -58.93 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.33 Total: 26.35 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 4.21 Total: -12.72 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -1.06 Total: -72.26 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -1.28 Total: -43.70 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.70 Total: 43.40 kcal Total: -62.84 3.90 -58.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186180459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.668 kcal (2) G-P(sol) polarization free energy of solvation -62.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds