Wall clock time and date at job start Mon Mar 30 2020 01:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47499 * 2 1 4 4 C 1.53007 * 109.47582 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47234 * 179.97438 * 4 3 2 6 6 C 1.36906 * 119.99879 * 89.70935 * 5 4 3 7 7 H 1.07997 * 119.99952 * 218.71056 * 6 5 4 8 8 C 1.39023 * 119.99899 * 38.71612 * 6 5 4 9 9 N 1.31385 * 120.00082 * 214.77892 * 8 6 5 10 10 Si 1.86804 * 120.00178 * 34.78014 * 8 6 5 11 11 H 1.48502 * 109.46925 * 84.76053 * 10 8 6 12 12 H 1.48499 * 109.47123 * 204.76025 * 10 8 6 13 13 H 1.48494 * 109.47100 * 324.76420 * 10 8 6 14 14 C 1.34773 * 119.99842 * 269.42883 * 5 4 3 15 15 O 1.21621 * 120.00112 * 5.36189 * 14 5 4 16 16 C 1.47429 * 119.99693 * 185.35748 * 14 5 4 17 17 C 1.39763 * 120.19690 * 94.00331 * 16 14 5 18 18 C 1.50696 * 120.04736 * 359.97438 * 17 16 14 19 19 C 1.37780 * 119.89949 * 179.73710 * 17 16 14 20 20 C 1.38552 * 120.30636 * 0.51521 * 19 17 16 21 21 C 1.38077 * 120.40213 * 359.76159 * 20 19 17 22 22 C 1.38685 * 120.09246 * 359.97438 * 21 20 19 23 23 O 1.35660 * 120.15493 * 180.02562 * 22 21 20 24 24 H 1.09004 * 109.46798 * 300.00522 * 1 2 3 25 25 H 1.08999 * 109.46599 * 59.99715 * 1 2 3 26 26 H 1.08994 * 109.47376 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47421 * 239.99462 * 2 1 3 28 28 H 1.09007 * 109.46924 * 119.99752 * 2 1 3 29 29 H 1.09004 * 109.47521 * 59.99922 * 3 2 1 30 30 H 1.08999 * 109.47427 * 299.99777 * 3 2 1 31 31 H 1.08994 * 109.46858 * 59.99350 * 4 3 2 32 32 H 1.09005 * 109.46400 * 299.99904 * 4 3 2 33 33 H 0.96995 * 120.00079 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47400 * 89.99940 * 18 17 16 35 35 H 1.09007 * 109.46969 * 209.99819 * 18 17 16 36 36 H 1.08995 * 109.47279 * 330.00007 * 18 17 16 37 37 H 1.07998 * 119.84110 * 180.25235 * 19 17 16 38 38 H 1.08003 * 119.79891 * 179.74357 * 20 19 17 39 39 H 1.08006 * 119.95619 * 180.02562 * 21 20 19 40 40 H 0.96694 * 113.99848 * 269.97672 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2804 3.4717 1.1854 7 1 4.0291 4.5173 1.2844 8 6 4.8295 2.7838 2.2615 9 7 4.4552 3.0743 3.4869 10 14 6.0995 1.4463 1.9652 11 1 7.4465 2.0602 1.8471 12 1 6.0884 0.4923 3.1032 13 1 5.7733 0.7233 0.7098 14 6 4.2945 3.4544 -1.1674 15 8 4.0107 2.9135 -2.2191 16 6 4.8968 4.8000 -1.1695 17 6 6.2803 4.9508 -1.2983 18 6 7.1621 3.7365 -1.4351 19 6 6.8361 6.2115 -1.3050 20 6 6.0308 7.3313 -1.1738 21 6 4.6631 7.1967 -1.0400 22 6 4.0855 5.9359 -1.0367 23 8 2.7419 5.8022 -0.9058 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6768 1.9564 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9338 0.9284 -0.8890 32 1 3.9330 0.9287 0.8909 33 1 4.8385 2.5946 4.2377 34 1 7.2750 3.4863 -2.4900 35 1 8.1412 3.9483 -1.0051 36 1 6.7082 2.8967 -0.9091 37 1 7.9048 6.3271 -1.4087 38 1 6.4756 8.3155 -1.1759 39 1 4.0421 8.0746 -0.9387 40 1 2.4418 5.7245 0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188647378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:03 Heat of formation + Delta-G solvation = -60.142438 kcal Electronic energy + Delta-G solvation = -22527.650169 eV Core-core repulsion = 19307.423856 eV Total energy + Delta-G solvation = -3220.226313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.85752 -38.03304 -36.35795 -35.42822 -33.98986 -32.11519 -31.94663 -29.85565 -28.34216 -26.61791 -24.92535 -23.82812 -22.18556 -21.15864 -20.63052 -19.18579 -17.64663 -17.38763 -16.12946 -15.65932 -15.31469 -15.11405 -14.77084 -14.38969 -13.88052 -13.71438 -13.29238 -13.04174 -12.96027 -12.69322 -12.51730 -12.23315 -12.17915 -11.85636 -11.48267 -11.34598 -11.33842 -11.14171 -10.94909 -10.69400 -10.59926 -10.42821 -10.14798 -10.04556 -9.75402 -9.14661 -8.65564 -8.20755 -8.11036 -7.78580 -6.67001 -4.10421 1.67287 1.73463 3.03963 3.16192 3.22524 3.63612 3.95973 4.08970 4.39613 4.73098 4.79816 5.24748 5.27585 5.40696 5.42356 5.56822 5.60940 5.75851 5.78926 5.89995 5.99474 6.05437 6.16728 6.20051 6.22995 6.27918 6.30161 6.37305 6.48052 6.54870 6.56502 6.75293 6.80693 6.88373 6.97697 7.01173 7.23035 7.29861 7.95672 8.14928 8.20064 8.89686 9.29473 9.66002 10.43965 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.007911 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.386629 B = 3538.338914 C = 4272.903082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.126 4.126 4 C 0.114 3.886 5 N -0.448 5.448 6 C -0.356 4.356 7 H 0.095 0.905 8 C 0.085 3.915 9 N -0.833 5.833 10 Si 0.844 3.156 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.254 1.254 14 C 0.522 3.478 15 O -0.589 6.589 16 C -0.089 4.089 17 C -0.038 4.038 18 C -0.115 4.115 19 C -0.135 4.135 20 C -0.104 4.104 21 C -0.156 4.156 22 C 0.136 3.864 23 O -0.496 6.496 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.276 0.724 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.171 1.793 -3.544 4.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.165 4.165 4 C -0.009 4.009 5 N -0.167 5.167 6 C -0.482 4.482 7 H 0.112 0.888 8 C -0.125 4.125 9 N -0.465 5.465 10 Si 0.668 3.332 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.178 1.178 14 C 0.312 3.688 15 O -0.474 6.474 16 C -0.092 4.092 17 C -0.039 4.039 18 C -0.172 4.172 19 C -0.154 4.154 20 C -0.122 4.122 21 C -0.175 4.175 22 C 0.091 3.909 23 O -0.307 6.307 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.010 1.503 -4.404 4.762 hybrid contribution 0.701 -0.556 0.842 1.228 sum 1.711 0.948 -3.562 4.064 Atomic orbital electron populations 1.21737 0.96249 1.00777 1.01752 1.21468 0.95532 0.97579 1.01438 1.21858 0.96196 0.95833 1.02599 1.21661 0.93692 0.84606 1.00902 1.43634 1.55859 1.12089 1.05102 1.18706 1.45089 0.97621 0.86809 0.88753 1.25282 0.95950 0.96835 0.94457 1.69947 1.36567 1.40698 0.99298 0.87528 0.84054 0.82391 0.79247 1.19748 1.20828 1.17824 1.18128 0.80893 0.85855 0.83961 1.90657 1.56726 1.68065 1.31927 1.20109 0.93343 0.94173 1.01613 1.19660 0.91984 0.95219 0.97055 1.20803 0.98383 0.95884 1.02107 1.20827 0.99581 0.91691 1.03255 1.20903 0.93041 0.98327 0.99946 1.21210 0.95316 0.96460 1.04498 1.18376 0.82925 0.91094 0.98513 1.84680 1.18039 1.95367 1.32603 0.92783 0.92942 0.93373 0.92435 0.92333 0.91173 0.92049 0.91875 0.91564 0.91390 0.91075 0.91516 0.91263 0.86043 0.86079 0.85769 0.74942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -1.96 5.93 -26.73 -0.16 -2.12 16 3 C -0.13 -2.48 5.54 -26.73 -0.15 -2.62 16 4 C 0.11 2.52 3.86 -4.04 -0.02 2.51 16 5 N -0.45 -10.63 2.11 -116.03 -0.25 -10.88 16 6 C -0.36 -8.86 8.84 -14.99 -0.13 -8.99 16 7 H 0.09 2.46 7.09 -52.49 -0.37 2.08 16 8 C 0.09 2.14 5.01 -17.45 -0.09 2.06 16 9 N -0.83 -21.74 13.96 55.50 0.77 -20.96 16 10 Si 0.84 19.10 26.49 -169.99 -4.50 14.59 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.25 -5.64 5.75 56.52 0.32 -5.32 16 14 C 0.52 12.63 5.06 -12.52 -0.06 12.57 16 15 O -0.59 -15.63 16.73 5.26 0.09 -15.54 16 16 C -0.09 -1.95 4.31 -104.84 -0.45 -2.40 16 17 C -0.04 -0.74 5.91 -104.22 -0.62 -1.36 16 18 C -0.12 -2.08 9.62 36.00 0.35 -1.73 16 19 C -0.14 -2.19 9.68 -39.63 -0.38 -2.57 16 20 C -0.10 -1.57 10.03 -39.52 -0.40 -1.97 16 21 C -0.16 -2.61 9.98 -39.48 -0.39 -3.00 16 22 C 0.14 2.73 6.17 -38.68 -0.24 2.49 16 23 O -0.50 -9.70 12.95 -18.68 -0.24 -9.94 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 29 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.06 1.40 7.48 -51.93 -0.39 1.02 16 32 H 0.07 1.46 4.52 -51.93 -0.23 1.23 16 33 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 36 H 0.07 1.42 6.97 -51.93 -0.36 1.06 16 37 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 39 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 40 H 0.39 6.60 8.94 45.56 0.41 7.00 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -29.60 332.76 -6.72 -36.32 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.23 Total: 10.21 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -2.37 Total: -8.81 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.53 Total: -31.84 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.15 Total: -25.48 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.50 Total: 14.59 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.60 -6.72 -36.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188647378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.823 kcal (2) G-P(sol) polarization free energy of solvation -29.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds