Wall clock time and date at job start Mon Mar 30 2020 01:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47499 * 2 1 4 4 C 1.53007 * 109.47582 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47234 * 179.97438 * 4 3 2 6 6 C 1.36906 * 119.99879 * 89.70935 * 5 4 3 7 7 H 1.07997 * 119.99952 * 218.71056 * 6 5 4 8 8 C 1.39023 * 119.99899 * 38.71612 * 6 5 4 9 9 N 1.31385 * 120.00082 * 214.77892 * 8 6 5 10 10 Si 1.86804 * 120.00178 * 34.78014 * 8 6 5 11 11 H 1.48502 * 109.46925 * 84.76053 * 10 8 6 12 12 H 1.48499 * 109.47123 * 204.76025 * 10 8 6 13 13 H 1.48494 * 109.47100 * 324.76420 * 10 8 6 14 14 C 1.34773 * 119.99842 * 269.42883 * 5 4 3 15 15 O 1.21621 * 120.00112 * 5.36189 * 14 5 4 16 16 C 1.47429 * 119.99693 * 185.35748 * 14 5 4 17 17 C 1.39763 * 120.19690 * 94.00331 * 16 14 5 18 18 C 1.50696 * 120.04736 * 359.97438 * 17 16 14 19 19 C 1.37780 * 119.89949 * 179.73710 * 17 16 14 20 20 C 1.38552 * 120.30636 * 0.51521 * 19 17 16 21 21 C 1.38077 * 120.40213 * 359.76159 * 20 19 17 22 22 C 1.38685 * 120.09246 * 359.97438 * 21 20 19 23 23 O 1.35660 * 120.15493 * 180.02562 * 22 21 20 24 24 H 1.09004 * 109.46798 * 300.00522 * 1 2 3 25 25 H 1.08999 * 109.46599 * 59.99715 * 1 2 3 26 26 H 1.08994 * 109.47376 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47421 * 239.99462 * 2 1 3 28 28 H 1.09007 * 109.46924 * 119.99752 * 2 1 3 29 29 H 1.09004 * 109.47521 * 59.99922 * 3 2 1 30 30 H 1.08999 * 109.47427 * 299.99777 * 3 2 1 31 31 H 1.08994 * 109.46858 * 59.99350 * 4 3 2 32 32 H 1.09005 * 109.46400 * 299.99904 * 4 3 2 33 33 H 0.96995 * 120.00079 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47400 * 89.99940 * 18 17 16 35 35 H 1.09007 * 109.46969 * 209.99819 * 18 17 16 36 36 H 1.08995 * 109.47279 * 330.00007 * 18 17 16 37 37 H 1.07998 * 119.84110 * 180.25235 * 19 17 16 38 38 H 1.08003 * 119.79891 * 179.74357 * 20 19 17 39 39 H 1.08006 * 119.95619 * 180.02562 * 21 20 19 40 40 H 0.96694 * 113.99848 * 269.97672 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2804 3.4717 1.1854 7 1 4.0291 4.5173 1.2844 8 6 4.8295 2.7838 2.2615 9 7 4.4552 3.0743 3.4869 10 14 6.0995 1.4463 1.9652 11 1 7.4465 2.0602 1.8471 12 1 6.0884 0.4923 3.1032 13 1 5.7733 0.7233 0.7098 14 6 4.2945 3.4544 -1.1674 15 8 4.0107 2.9135 -2.2191 16 6 4.8968 4.8000 -1.1695 17 6 6.2803 4.9508 -1.2983 18 6 7.1621 3.7365 -1.4351 19 6 6.8361 6.2115 -1.3050 20 6 6.0308 7.3313 -1.1738 21 6 4.6631 7.1967 -1.0400 22 6 4.0855 5.9359 -1.0367 23 8 2.7419 5.8022 -0.9058 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6768 1.9564 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9338 0.9284 -0.8890 32 1 3.9330 0.9287 0.8909 33 1 4.8385 2.5946 4.2377 34 1 7.2750 3.4863 -2.4900 35 1 8.1412 3.9483 -1.0051 36 1 6.7082 2.8967 -0.9091 37 1 7.9048 6.3271 -1.4087 38 1 6.4756 8.3155 -1.1759 39 1 4.0421 8.0746 -0.9387 40 1 2.4418 5.7245 0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188647378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:03 Heat of formation + Delta-G solvation = -78.420632 kcal Electronic energy + Delta-G solvation = -22528.442771 eV Core-core repulsion = 19307.423856 eV Total energy + Delta-G solvation = -3221.018915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.45696 -39.68341 -37.80404 -37.20195 -35.60623 -33.91700 -33.42369 -31.32447 -29.84367 -27.99617 -26.84312 -25.33297 -23.66720 -22.56089 -22.10110 -20.97611 -19.29010 -18.96798 -17.91585 -17.25464 -17.00982 -16.62401 -16.22225 -16.05125 -15.50375 -15.26844 -14.75842 -14.65754 -14.41511 -14.21403 -14.12984 -13.84900 -13.59232 -13.43735 -13.13384 -12.90277 -12.68542 -12.59509 -12.45596 -12.21285 -12.18566 -11.95296 -11.74382 -11.61343 -11.43289 -11.00483 -10.51735 -9.79845 -9.56937 -9.45587 -8.62999 -6.07977 0.27853 0.37615 1.20107 1.31433 1.38967 1.79267 2.18356 2.50984 2.73157 2.92216 3.33452 3.91562 3.92960 4.01834 4.06877 4.15249 4.26457 4.37336 4.39531 4.47313 4.58217 4.68070 4.68315 4.77399 4.82729 4.89885 4.92206 4.94928 5.05023 5.19387 5.22563 5.34583 5.38616 5.44562 5.46043 5.48161 5.60900 5.92988 6.02780 6.23688 6.73658 6.94624 7.38153 7.76906 8.51124 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.007911 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.386629 B = 3538.338914 C = 4272.903082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.115 4.115 4 C 0.108 3.892 5 N -0.451 5.451 6 C -0.351 4.351 7 H 0.076 0.924 8 C 0.057 3.943 9 N -0.863 5.863 10 Si 0.887 3.113 11 H -0.268 1.268 12 H -0.274 1.274 13 H -0.254 1.254 14 C 0.522 3.478 15 O -0.624 6.624 16 C -0.134 4.134 17 C -0.060 4.060 18 C -0.114 4.114 19 C -0.130 4.130 20 C -0.089 4.089 21 C -0.156 4.156 22 C 0.111 3.889 23 O -0.509 6.509 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.281 0.719 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.035 0.965 37 H 0.160 0.840 38 H 0.169 0.831 39 H 0.151 0.849 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.517 2.614 -3.640 5.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C -0.154 4.154 4 C -0.015 4.015 5 N -0.169 5.169 6 C -0.477 4.477 7 H 0.094 0.906 8 C -0.152 4.152 9 N -0.497 5.497 10 Si 0.711 3.289 11 H -0.194 1.194 12 H -0.200 1.200 13 H -0.178 1.178 14 C 0.312 3.688 15 O -0.512 6.512 16 C -0.137 4.137 17 C -0.061 4.061 18 C -0.171 4.171 19 C -0.147 4.147 20 C -0.107 4.107 21 C -0.174 4.174 22 C 0.066 3.934 23 O -0.321 6.321 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.054 0.946 37 H 0.178 0.822 38 H 0.186 0.814 39 H 0.169 0.831 40 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 2.357 2.320 -4.485 5.572 hybrid contribution 0.293 -0.714 0.848 1.147 sum 2.650 1.606 -3.637 4.778 Atomic orbital electron populations 1.21707 0.94275 1.02426 1.01703 1.21466 0.97262 0.94816 1.02133 1.21740 0.94470 0.98229 1.00929 1.21779 0.95291 0.83948 1.00433 1.43723 1.55840 1.12514 1.04834 1.18526 1.45110 0.97019 0.87088 0.90634 1.25674 0.96763 0.98596 0.94157 1.69973 1.37546 1.42235 0.99936 0.86824 0.82169 0.80700 0.79239 1.19386 1.19956 1.17837 1.18578 0.80042 0.86848 0.83307 1.90602 1.58235 1.69391 1.32948 1.20206 0.94996 0.93206 1.05299 1.19987 0.91135 0.97176 0.97786 1.20822 0.99319 0.94452 1.02463 1.21285 1.01675 0.90440 1.01333 1.21474 0.92158 1.00187 0.96886 1.21560 0.96661 0.95770 1.03427 1.18731 0.82755 0.92121 0.99835 1.84645 1.18616 1.95527 1.33321 0.92825 0.93066 0.90849 0.91782 0.91566 0.92533 0.93830 0.92514 0.91570 0.90861 0.90251 0.88568 0.94605 0.82213 0.81382 0.83142 0.74344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.91 71.98 0.71 -3.08 16 2 C -0.12 -3.75 5.93 30.59 0.18 -3.57 16 3 C -0.12 -4.64 5.54 30.59 0.17 -4.47 16 4 C 0.11 4.91 3.86 86.38 0.33 5.24 16 5 N -0.45 -22.13 2.11 -639.25 -1.35 -23.48 16 6 C -0.35 -17.94 8.84 84.09 0.74 -17.19 16 7 H 0.08 4.10 7.09 -2.91 -0.02 4.08 16 8 C 0.06 2.87 5.01 84.95 0.43 3.29 16 9 N -0.86 -45.41 13.96 21.68 0.30 -45.10 16 10 Si 0.89 39.33 26.49 68.60 1.82 41.15 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 H -0.25 -11.17 5.75 99.48 0.57 -10.60 16 14 C 0.52 26.16 5.06 86.66 0.44 26.60 16 15 O -0.62 -34.56 16.73 -4.10 -0.07 -34.62 16 16 C -0.13 -5.94 4.31 -20.01 -0.09 -6.03 16 17 C -0.06 -2.27 5.91 -19.61 -0.12 -2.38 16 18 C -0.11 -4.02 9.62 71.23 0.69 -3.33 16 19 C -0.13 -3.75 9.68 22.24 0.22 -3.53 16 20 C -0.09 -2.34 10.03 22.31 0.22 -2.11 16 21 C -0.16 -4.86 9.98 22.34 0.22 -4.64 16 22 C 0.11 4.45 6.17 22.86 0.14 4.60 16 23 O -0.51 -20.61 12.95 -89.75 -1.16 -21.77 16 24 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 2.61 7.48 -2.39 -0.02 2.59 16 32 H 0.07 2.96 4.52 -2.38 -0.01 2.95 16 33 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 34 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.10 2.71 8.09 -2.38 -0.02 2.69 16 36 H 0.03 1.47 6.97 -2.39 -0.02 1.46 16 37 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 38 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 40 H 0.40 14.19 8.94 -74.06 -0.66 13.53 16 Total: -1.00 -65.92 332.76 4.07 -61.85 By element: Atomic # 1 Polarization: 32.36 SS G_CDS: 0.24 Total: 32.60 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.29 Total: -10.62 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -1.05 Total: -68.58 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: -1.23 Total: -56.39 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.82 Total: 41.15 kcal Total: -65.92 4.07 -61.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188647378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.572 kcal (2) G-P(sol) polarization free energy of solvation -65.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds