Wall clock time and date at job start Mon Mar 30 2020 02:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.46965 * 2 1 4 4 C 1.53005 * 109.46965 * 180.02562 * 3 2 1 5 5 O 1.45203 * 109.47157 * 180.02562 * 4 3 2 6 6 C 1.34662 * 117.00443 * 179.97438 * 5 4 3 7 7 O 1.21509 * 119.99325 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00450 * 180.02562 * 6 5 4 9 9 C 1.37195 * 119.99805 * 0.02562 * 8 6 5 10 10 H 1.07999 * 120.00093 * 134.52798 * 9 8 6 11 11 C 1.38886 * 120.00072 * 314.52210 * 9 8 6 12 12 N 1.31463 * 120.00007 * 157.94402 * 11 9 8 13 13 Si 1.86800 * 120.00038 * 337.95101 * 11 9 8 14 14 H 1.48496 * 109.47586 * 95.22250 * 13 11 9 15 15 H 1.48501 * 109.47012 * 215.22373 * 13 11 9 16 16 H 1.48507 * 109.47087 * 335.22346 * 13 11 9 17 17 C 1.46501 * 119.99957 * 180.02562 * 8 6 5 18 18 C 1.50700 * 109.47075 * 269.29071 * 17 8 6 19 19 C 1.38240 * 119.99641 * 88.68455 * 18 17 8 20 20 C 1.38231 * 119.99945 * 179.97438 * 19 18 17 21 21 C 1.38237 * 119.99919 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00245 * 0.27519 * 21 20 19 23 23 C 1.38230 * 120.00403 * 268.66417 * 18 17 8 24 24 H 1.09002 * 109.46801 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47032 * 299.99331 * 1 2 3 26 26 H 1.08988 * 109.47512 * 59.99890 * 1 2 3 27 27 H 1.09000 * 109.46645 * 240.00408 * 2 1 3 28 28 H 1.08994 * 109.47061 * 120.00647 * 2 1 3 29 29 H 1.09000 * 109.47105 * 60.00691 * 3 2 1 30 30 H 1.08994 * 109.47759 * 300.00219 * 3 2 1 31 31 H 1.08993 * 109.46637 * 60.00818 * 4 3 2 32 32 H 1.08988 * 109.47512 * 300.00110 * 4 3 2 33 33 H 0.97001 * 120.00139 * 180.02562 * 12 11 9 34 34 H 1.09004 * 109.46802 * 149.29471 * 17 8 6 35 35 H 1.08992 * 109.46971 * 29.29520 * 17 8 6 36 36 H 1.07994 * 120.00110 * 359.97438 * 19 18 17 37 37 H 1.07998 * 120.00552 * 180.02562 * 20 19 18 38 38 H 1.07999 * 119.99925 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.00519 * 179.72008 * 22 21 20 40 40 H 1.07999 * 119.99799 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 8 4.0541 2.8114 0.0000 6 6 5.3891 2.9879 0.0000 7 8 6.1292 2.0243 -0.0009 8 7 5.9042 4.2333 0.0011 9 6 5.0684 5.3213 0.0027 10 1 5.2599 6.1484 0.6702 11 6 3.9762 5.3592 -0.8543 12 7 2.9545 6.1407 -0.5829 13 14 3.9587 4.2994 -2.3925 14 1 3.2393 3.0311 -2.1117 15 1 3.2689 5.0277 -3.4876 16 1 5.3540 3.9970 -2.8012 17 6 7.3566 4.4253 0.0006 18 6 7.8529 4.5070 1.4212 19 6 8.2117 3.3547 2.0953 20 6 8.6675 3.4296 3.3982 21 6 8.7651 4.6569 4.0268 22 6 8.4015 5.8087 3.3544 23 6 7.9499 5.7342 2.0500 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9329 0.9289 -0.8909 32 1 3.9338 0.9285 0.8890 33 1 2.1915 6.1669 -1.1813 34 1 7.6007 5.3494 -0.5233 35 1 7.8339 3.5849 -0.5033 36 1 8.1358 2.3959 1.6041 37 1 8.9481 2.5295 3.9248 38 1 9.1208 4.7155 5.0448 39 1 8.4734 6.7672 3.8470 40 1 7.6696 6.6344 1.5233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193690915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:23 Heat of formation + Delta-G solvation = -57.399849 kcal Electronic energy + Delta-G solvation = -21907.809223 eV Core-core repulsion = 18687.701837 eV Total energy + Delta-G solvation = -3220.107386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.67547 -38.61058 -36.39930 -34.87376 -34.41849 -32.27609 -30.83148 -30.43360 -29.08951 -26.10432 -24.46793 -23.13802 -22.07676 -21.17416 -20.87365 -19.84463 -18.33263 -16.60321 -16.36550 -15.91471 -15.30521 -15.01353 -14.75532 -14.51894 -14.33768 -13.80470 -13.48368 -13.23981 -12.96452 -12.73206 -12.57384 -12.36824 -11.98165 -11.84949 -11.49884 -11.22134 -11.10907 -10.93060 -10.89586 -10.80385 -10.52839 -10.49337 -10.38457 -10.07368 -9.50035 -9.37443 -8.85773 -8.46139 -8.30624 -7.75510 -6.36265 -4.08683 1.75734 1.86383 3.08289 3.33765 3.38663 3.56303 3.90707 4.27659 4.32770 4.96194 5.06763 5.08379 5.20271 5.30492 5.31360 5.41755 5.53682 5.55122 5.63318 5.76045 5.81437 5.85507 5.95048 5.98268 5.98499 6.05475 6.14040 6.21094 6.35800 6.45163 6.46616 6.52548 6.54455 6.89825 6.91186 7.16384 7.35073 7.45919 7.65046 7.82942 8.52280 8.99859 9.31489 9.78338 10.73327 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.006051 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.189160 B = 4626.594578 C = 5526.391788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.121 4.121 4 C 0.084 3.916 5 O -0.339 6.339 6 C 0.615 3.385 7 O -0.622 6.622 8 N -0.447 5.447 9 C -0.353 4.353 10 H 0.100 0.900 11 C 0.093 3.907 12 N -0.857 5.857 13 Si 0.873 3.127 14 H -0.259 1.259 15 H -0.292 1.292 16 H -0.272 1.272 17 C 0.162 3.838 18 C -0.087 4.087 19 C -0.099 4.099 20 C -0.131 4.131 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.096 4.096 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.273 0.727 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.034 -6.062 3.296 7.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.159 4.159 4 C 0.008 3.992 5 O -0.252 6.252 6 C 0.372 3.628 7 O -0.518 6.518 8 N -0.174 5.174 9 C -0.479 4.479 10 H 0.117 0.883 11 C -0.116 4.116 12 N -0.491 5.491 13 Si 0.700 3.300 14 H -0.185 1.185 15 H -0.219 1.219 16 H -0.197 1.197 17 C 0.040 3.960 18 C -0.089 4.089 19 C -0.118 4.118 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.148 4.148 23 C -0.115 4.115 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.992 -6.270 3.236 7.664 hybrid contribution -0.190 -0.461 -0.753 0.903 sum 2.802 -6.731 2.483 7.702 Atomic orbital electron populations 1.21743 0.95516 1.01311 1.02141 1.21419 0.96048 0.96169 1.02093 1.21619 0.93416 0.96906 1.03916 1.22688 0.93842 0.81364 1.01273 1.86546 1.22488 1.29412 1.86784 1.18218 0.80942 0.84675 0.78987 1.90787 1.59984 1.40361 1.60654 1.42519 1.03938 1.02448 1.68543 1.18885 1.06800 0.99326 1.22934 0.88281 1.25300 0.94426 0.94836 0.97052 1.69797 1.04844 1.38397 1.36079 0.86843 0.79022 0.81458 0.82695 1.18484 1.21923 1.19724 1.20409 0.81395 1.02333 0.91891 1.20394 0.97646 0.93162 0.97653 1.21238 0.97375 0.98638 0.94503 1.21068 1.01212 0.97340 0.95300 1.21036 1.01280 0.92946 0.99392 1.21066 1.00562 0.98073 0.95052 1.21131 0.97866 0.97707 0.94779 0.92845 0.92526 0.92647 0.91990 0.91817 0.90690 0.90985 0.92601 0.92181 0.91713 0.89563 0.90535 0.85603 0.86749 0.86856 0.86573 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.55 5.93 -26.73 -0.16 -1.71 16 3 C -0.12 -2.03 5.59 -26.73 -0.15 -2.18 16 4 C 0.08 1.68 4.88 37.16 0.18 1.86 16 5 O -0.34 -8.39 5.79 -40.39 -0.23 -8.62 16 6 C 0.62 15.69 6.59 54.05 0.36 16.04 16 7 O -0.62 -15.88 15.18 -19.28 -0.29 -16.17 16 8 N -0.45 -11.11 2.07 -121.52 -0.25 -11.37 16 9 C -0.35 -9.55 9.62 -14.91 -0.14 -9.69 16 10 H 0.10 2.80 8.06 -52.49 -0.42 2.37 16 11 C 0.09 2.54 4.69 -17.47 -0.08 2.46 16 12 N -0.86 -24.33 13.96 55.49 0.77 -23.55 16 13 Si 0.87 21.75 25.18 -169.99 -4.28 17.47 16 14 H -0.26 -6.26 5.37 56.52 0.30 -5.96 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 17 C 0.16 3.38 5.51 -5.19 -0.03 3.35 16 18 C -0.09 -1.68 5.46 -104.62 -0.57 -2.25 16 19 C -0.10 -1.82 9.71 -39.58 -0.38 -2.20 16 20 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 21 C -0.13 -1.90 10.05 -39.58 -0.40 -2.29 16 22 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 23 C -0.10 -1.70 9.70 -39.58 -0.38 -2.08 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.62 8.14 -51.94 -0.42 0.20 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.29 7.60 -51.93 -0.39 0.89 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.14 8.13 -51.94 -0.42 0.71 16 33 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.09 1.65 7.98 -51.93 -0.41 1.24 16 35 H 0.08 1.57 7.35 -51.93 -0.38 1.18 16 36 H 0.13 2.40 7.53 -52.49 -0.40 2.00 16 37 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 333.68 15.07 5.03 5.03 Total: -1.00 -30.77 333.68 -7.76 -38.53 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.31 Total: 3.56 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.19 Total: -4.87 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.52 Total: -34.92 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.53 Total: -24.80 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.28 Total: 17.47 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.77 -7.76 -38.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193690915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.869 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds