Wall clock time and date at job start Mon Mar 30 2020 02:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.46965 * 2 1 4 4 C 1.53005 * 109.46965 * 180.02562 * 3 2 1 5 5 O 1.45203 * 109.47157 * 180.02562 * 4 3 2 6 6 C 1.34662 * 117.00443 * 179.97438 * 5 4 3 7 7 O 1.21509 * 119.99325 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00450 * 180.02562 * 6 5 4 9 9 C 1.37195 * 119.99805 * 0.02562 * 8 6 5 10 10 H 1.07999 * 120.00093 * 134.52798 * 9 8 6 11 11 C 1.38886 * 120.00072 * 314.52210 * 9 8 6 12 12 N 1.31463 * 120.00007 * 157.94402 * 11 9 8 13 13 Si 1.86800 * 120.00038 * 337.95101 * 11 9 8 14 14 H 1.48496 * 109.47586 * 95.22250 * 13 11 9 15 15 H 1.48501 * 109.47012 * 215.22373 * 13 11 9 16 16 H 1.48507 * 109.47087 * 335.22346 * 13 11 9 17 17 C 1.46501 * 119.99957 * 180.02562 * 8 6 5 18 18 C 1.50700 * 109.47075 * 269.29071 * 17 8 6 19 19 C 1.38240 * 119.99641 * 88.68455 * 18 17 8 20 20 C 1.38231 * 119.99945 * 179.97438 * 19 18 17 21 21 C 1.38237 * 119.99919 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00245 * 0.27519 * 21 20 19 23 23 C 1.38230 * 120.00403 * 268.66417 * 18 17 8 24 24 H 1.09002 * 109.46801 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47032 * 299.99331 * 1 2 3 26 26 H 1.08988 * 109.47512 * 59.99890 * 1 2 3 27 27 H 1.09000 * 109.46645 * 240.00408 * 2 1 3 28 28 H 1.08994 * 109.47061 * 120.00647 * 2 1 3 29 29 H 1.09000 * 109.47105 * 60.00691 * 3 2 1 30 30 H 1.08994 * 109.47759 * 300.00219 * 3 2 1 31 31 H 1.08993 * 109.46637 * 60.00818 * 4 3 2 32 32 H 1.08988 * 109.47512 * 300.00110 * 4 3 2 33 33 H 0.97001 * 120.00139 * 180.02562 * 12 11 9 34 34 H 1.09004 * 109.46802 * 149.29471 * 17 8 6 35 35 H 1.08992 * 109.46971 * 29.29520 * 17 8 6 36 36 H 1.07994 * 120.00110 * 359.97438 * 19 18 17 37 37 H 1.07998 * 120.00552 * 180.02562 * 20 19 18 38 38 H 1.07999 * 119.99925 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.00519 * 179.72008 * 22 21 20 40 40 H 1.07999 * 119.99799 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 8 4.0541 2.8114 0.0000 6 6 5.3891 2.9879 0.0000 7 8 6.1292 2.0243 -0.0009 8 7 5.9042 4.2333 0.0011 9 6 5.0684 5.3213 0.0027 10 1 5.2599 6.1484 0.6702 11 6 3.9762 5.3592 -0.8543 12 7 2.9545 6.1407 -0.5829 13 14 3.9587 4.2994 -2.3925 14 1 3.2393 3.0311 -2.1117 15 1 3.2689 5.0277 -3.4876 16 1 5.3540 3.9970 -2.8012 17 6 7.3566 4.4253 0.0006 18 6 7.8529 4.5070 1.4212 19 6 8.2117 3.3547 2.0953 20 6 8.6675 3.4296 3.3982 21 6 8.7651 4.6569 4.0268 22 6 8.4015 5.8087 3.3544 23 6 7.9499 5.7342 2.0500 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9329 0.9289 -0.8909 32 1 3.9338 0.9285 0.8890 33 1 2.1915 6.1669 -1.1813 34 1 7.6007 5.3494 -0.5233 35 1 7.8339 3.5849 -0.5033 36 1 8.1358 2.3959 1.6041 37 1 8.9481 2.5295 3.9248 38 1 9.1208 4.7155 5.0448 39 1 8.4734 6.7672 3.8470 40 1 7.6696 6.6344 1.5233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193690915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:22 Heat of formation + Delta-G solvation = -73.251038 kcal Electronic energy + Delta-G solvation = -21908.496582 eV Core-core repulsion = 18687.701837 eV Total energy + Delta-G solvation = -3220.794745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52440 -40.01731 -38.07803 -36.69514 -35.86250 -34.22006 -32.42083 -31.72364 -30.38077 -27.76767 -26.36188 -24.51268 -23.39347 -22.66295 -22.13487 -21.60514 -20.25469 -18.38715 -17.98649 -17.56190 -17.10376 -16.63689 -16.26853 -15.89560 -15.86739 -15.43356 -14.95019 -14.73314 -14.41823 -14.24155 -14.07872 -13.94408 -13.38955 -13.27206 -13.05165 -12.90838 -12.78774 -12.49768 -12.22227 -12.14093 -12.09151 -11.94389 -11.80054 -11.65732 -11.39639 -11.26078 -10.84357 -9.82652 -9.75759 -9.58154 -8.49372 -6.22048 0.41831 0.56169 1.15973 1.32351 1.36105 1.76057 1.93987 2.27160 2.93204 2.95962 3.50748 3.84664 3.93513 3.98817 3.99090 4.16370 4.21361 4.29763 4.31478 4.34437 4.40565 4.57928 4.63110 4.79005 4.80613 4.80688 4.84582 4.98719 5.14025 5.15194 5.22210 5.26379 5.38527 5.46035 5.61449 5.63974 5.70116 5.78741 5.82851 6.17928 6.39722 6.93882 7.25731 7.80542 8.63806 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.006051 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.189160 B = 4626.594578 C = 5526.391788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.115 4.115 4 C 0.075 3.925 5 O -0.361 6.361 6 C 0.608 3.392 7 O -0.629 6.629 8 N -0.453 5.453 9 C -0.353 4.353 10 H 0.079 0.921 11 C 0.062 3.938 12 N -0.888 5.888 13 Si 0.914 3.086 14 H -0.251 1.251 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.160 3.840 18 C -0.110 4.110 19 C -0.118 4.118 20 C -0.131 4.131 21 C -0.120 4.120 22 C -0.128 4.128 23 C -0.112 4.112 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.278 0.722 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.142 0.858 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.285 -7.011 4.464 8.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.153 4.153 4 C 0.000 4.000 5 O -0.274 6.274 6 C 0.364 3.636 7 O -0.526 6.526 8 N -0.181 5.181 9 C -0.479 4.479 10 H 0.097 0.903 11 C -0.144 4.144 12 N -0.524 5.524 13 Si 0.740 3.260 14 H -0.176 1.176 15 H -0.210 1.210 16 H -0.207 1.207 17 C 0.039 3.961 18 C -0.112 4.112 19 C -0.136 4.136 20 C -0.149 4.149 21 C -0.138 4.138 22 C -0.146 4.146 23 C -0.130 4.130 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.159 0.841 38 H 0.170 0.830 39 H 0.164 0.836 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.245 -7.225 4.403 9.062 hybrid contribution -0.202 -0.174 -1.001 1.036 sum 3.044 -7.399 3.402 8.694 Atomic orbital electron populations 1.21740 0.94011 1.02732 1.02057 1.21423 0.97261 0.93357 1.03092 1.21660 0.91092 0.99563 1.02938 1.23079 0.95739 0.79476 1.01693 1.86522 1.22069 1.32215 1.86631 1.18446 0.81302 0.84849 0.78990 1.90761 1.60241 1.40464 1.61114 1.42688 1.05259 1.01785 1.68390 1.18747 1.07467 0.99148 1.22547 0.90311 1.25726 0.94124 0.95756 0.98769 1.69845 1.05492 1.39949 1.37109 0.86210 0.78479 0.80846 0.80458 1.17583 1.20953 1.20741 1.20538 0.79138 1.02656 0.93807 1.20277 0.99576 0.94370 0.96932 1.21235 0.98840 0.97631 0.95925 1.21402 1.00080 0.99179 0.94222 1.21494 0.99468 0.91942 1.00867 1.21446 0.99157 0.99946 0.94044 1.21251 0.98687 0.97010 0.96101 0.90662 0.92500 0.92925 0.91232 0.90607 0.91248 0.92346 0.92492 0.91392 0.91235 0.88626 0.90732 0.87168 0.84058 0.82982 0.83621 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.91 71.98 0.71 -2.27 16 2 C -0.11 -2.72 5.93 30.59 0.18 -2.53 16 3 C -0.11 -3.77 5.59 30.59 0.17 -3.60 16 4 C 0.07 2.96 4.88 71.98 0.35 3.31 16 5 O -0.36 -17.95 5.79 -55.72 -0.32 -18.28 16 6 C 0.61 31.32 6.59 129.79 0.86 32.17 16 7 O -0.63 -32.41 15.18 19.81 0.30 -32.11 16 8 N -0.45 -22.95 2.07 -768.78 -1.59 -24.54 16 9 C -0.35 -19.46 9.62 84.01 0.81 -18.65 16 10 H 0.08 4.60 8.06 -2.91 -0.02 4.57 16 11 C 0.06 3.47 4.69 84.90 0.40 3.87 16 12 N -0.89 -51.03 13.96 21.65 0.30 -50.73 16 13 Si 0.91 45.04 25.18 68.60 1.73 46.77 16 14 H -0.25 -11.90 5.37 99.48 0.53 -11.36 16 15 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 16 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 17 C 0.16 6.83 5.51 85.63 0.47 7.30 16 18 C -0.11 -4.28 5.46 -19.87 -0.11 -4.39 16 19 C -0.12 -4.29 9.71 22.27 0.22 -4.07 16 20 C -0.13 -3.85 10.05 22.27 0.22 -3.63 16 21 C -0.12 -3.13 10.05 22.27 0.22 -2.90 16 22 C -0.13 -3.65 10.05 22.27 0.22 -3.43 16 23 C -0.11 -3.89 9.70 22.27 0.22 -3.68 16 24 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.06 2.06 7.60 -2.39 -0.02 2.04 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 2.54 8.13 -2.39 -0.02 2.52 16 33 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.10 3.78 7.98 -2.38 -0.02 3.76 16 35 H 0.07 3.15 7.35 -2.39 -0.02 3.13 16 36 H 0.11 4.28 7.53 -2.91 -0.02 4.26 16 37 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 38 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 39 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 40 H 0.12 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -66.25 333.68 6.19 -60.06 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.83 Total: 21.32 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 4.95 Total: -2.50 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -1.29 Total: -75.27 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -0.02 Total: -50.39 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.73 Total: 46.77 kcal Total: -66.25 6.19 -60.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193690915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.191 kcal (2) G-P(sol) polarization free energy of solvation -66.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds