Wall clock time and date at job start Mon Mar 30 2020 01:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47390 * 2 1 4 4 C 1.52990 * 109.47724 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47452 * 180.02562 * 4 3 2 6 6 O 1.45200 * 109.47375 * 180.02562 * 5 4 3 7 7 C 1.34643 * 117.00100 * 179.97438 * 6 5 4 8 8 O 1.21501 * 120.00131 * 359.97438 * 7 6 5 9 9 N 1.34784 * 120.00030 * 179.97438 * 7 6 5 10 10 C 1.39253 * 119.99835 * 184.28993 * 9 7 6 11 11 C 1.39476 * 119.83521 * 324.70866 * 10 9 7 12 12 C 1.36373 * 120.16992 * 180.27857 * 11 10 9 13 13 C 1.40872 * 119.82895 * 359.47663 * 12 11 10 14 14 C 1.41152 * 120.16720 * 180.23567 * 13 12 11 15 15 H 1.08007 * 119.99578 * 215.05567 * 14 13 12 16 16 C 1.39895 * 120.00413 * 35.04858 * 14 13 12 17 17 N 1.30884 * 119.99616 * 355.55263 * 16 14 13 18 18 Si 1.86799 * 120.00168 * 175.54398 * 16 14 13 19 19 H 1.48500 * 109.47022 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47072 * 120.00507 * 18 16 14 21 21 H 1.48498 * 109.47004 * 240.00267 * 18 16 14 22 22 C 1.40875 * 119.66840 * 0.54354 * 13 12 11 23 23 C 1.36373 * 119.82503 * 359.70715 * 22 13 12 24 24 H 1.09002 * 109.46871 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47147 * 299.99594 * 1 2 3 26 26 H 1.08999 * 109.47247 * 60.00308 * 1 2 3 27 27 H 1.09001 * 109.47294 * 239.99978 * 2 1 3 28 28 H 1.09005 * 109.47396 * 120.00124 * 2 1 3 29 29 H 1.09009 * 109.46738 * 60.00008 * 3 2 1 30 30 H 1.08997 * 109.47073 * 300.00693 * 3 2 1 31 31 H 1.09001 * 109.47124 * 59.99878 * 4 3 2 32 32 H 1.09005 * 109.47232 * 300.00228 * 4 3 2 33 33 H 1.09001 * 109.47357 * 59.99651 * 5 4 3 34 34 H 1.09003 * 109.47216 * 299.99818 * 5 4 3 35 35 H 0.96994 * 119.99738 * 4.28580 * 9 7 6 36 36 H 1.07999 * 119.91491 * 359.97438 * 11 10 9 37 37 H 1.08000 * 120.08678 * 179.72304 * 12 11 10 38 38 H 0.96998 * 119.99611 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.08598 * 179.69427 * 22 13 12 40 40 H 1.08007 * 119.91177 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8850 0.0013 6 8 5.5319 2.8851 0.0013 7 6 6.1431 4.0848 0.0013 8 8 5.4814 5.1038 0.0008 9 7 7.4891 4.1554 0.0018 10 6 8.1214 5.3928 0.0920 11 6 7.5541 6.5084 -0.5236 12 6 8.1704 7.7224 -0.4444 13 6 9.3773 7.8501 0.2708 14 6 10.0187 9.1043 0.3616 15 1 11.0973 9.1598 0.3699 16 6 9.2574 10.2752 0.4406 17 7 7.9535 10.2159 0.3428 18 14 10.1016 11.9234 0.6859 19 1 11.5705 11.7203 0.7650 20 1 9.7867 12.8160 -0.4584 21 1 9.6186 12.5443 1.9454 22 6 9.9444 6.7187 0.8895 23 6 9.3190 5.5103 0.7972 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.6766 1.9563 -0.8899 31 1 3.9337 0.9286 -0.8891 32 1 3.9329 0.9288 0.8909 33 1 3.7161 3.3986 0.8912 34 1 3.7170 3.3991 -0.8887 35 1 8.0173 3.3442 -0.0606 36 1 6.6269 6.4096 -1.0685 37 1 7.7322 8.5844 -0.9253 38 1 7.4256 11.0277 0.3980 39 1 10.8720 6.8079 1.4353 40 1 9.7523 4.6420 1.2713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193768046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:49 Heat of formation + Delta-G solvation = -83.329859 kcal Electronic energy + Delta-G solvation = -20290.939834 eV Core-core repulsion = 17069.708039 eV Total energy + Delta-G solvation = -3221.231795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.20985 -38.01605 -36.63745 -35.62095 -34.46359 -32.94838 -31.66473 -29.53181 -28.96624 -26.57797 -24.93422 -22.50096 -21.57498 -21.34447 -21.16306 -20.03604 -18.22662 -17.29885 -16.64823 -16.58342 -15.68977 -15.65003 -15.03867 -14.18180 -14.06591 -13.92982 -13.81959 -13.22800 -12.89137 -12.75341 -12.57226 -12.14461 -11.81584 -11.71118 -11.50047 -11.47112 -11.40996 -11.17727 -11.08519 -10.92937 -10.85225 -10.54129 -10.31911 -10.11916 -9.93094 -9.70540 -9.11436 -8.84158 -7.54414 -6.92516 -6.60482 -4.34564 2.45533 2.70457 3.02793 3.10608 3.11386 3.16424 3.48387 3.98568 4.36954 4.60199 4.71314 4.71423 4.88483 4.92252 5.06648 5.29362 5.32004 5.46215 5.52154 5.55628 5.64385 5.71304 5.74954 5.86034 6.00985 6.04943 6.12832 6.33350 6.55266 6.79552 6.99079 7.03430 7.18828 7.27530 7.62498 7.65286 7.95636 8.08322 8.15966 8.31441 8.65997 8.85550 8.92454 9.02005 10.30596 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038737 B = 0.002734 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.650602 B =10238.397415 C =10827.336193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.118 4.118 4 C -0.119 4.119 5 C 0.087 3.913 6 O -0.379 6.379 7 C 0.634 3.366 8 O -0.559 6.559 9 N -0.630 5.630 10 C 0.014 3.986 11 C -0.092 4.092 12 C -0.144 4.144 13 C 0.101 3.899 14 C -0.461 4.461 15 H 0.077 0.923 16 C 0.068 3.932 17 N -0.807 5.807 18 Si 0.916 3.084 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.275 1.275 22 C -0.203 4.203 23 C -0.109 4.109 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.402 0.598 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.278 0.722 39 H 0.099 0.901 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.643 -15.150 -0.969 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.156 4.156 4 C -0.157 4.157 5 C 0.012 3.988 6 O -0.294 6.294 7 C 0.387 3.613 8 O -0.446 6.446 9 N -0.280 5.280 10 C -0.078 4.078 11 C -0.112 4.112 12 C -0.164 4.164 13 C 0.098 3.902 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.148 4.148 17 N -0.433 5.433 18 Si 0.741 3.259 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.223 4.223 23 C -0.129 4.129 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.236 0.764 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.272 -14.533 -0.954 17.265 hybrid contribution 0.393 0.444 0.263 0.649 sum -8.879 -14.089 -0.691 16.668 Atomic orbital electron populations 1.21780 0.95782 1.01591 1.01954 1.21505 0.95891 0.96467 1.02217 1.21529 0.93919 0.97374 1.02767 1.21592 0.95448 0.95034 1.03610 1.22904 0.75334 0.97782 1.02767 1.86169 1.23551 1.32045 1.87648 1.18222 0.83790 0.81780 0.77509 1.90999 1.64447 1.34303 1.54896 1.41593 1.02197 1.09448 1.74733 1.17098 0.97135 0.83640 1.09890 1.20671 0.99053 0.92515 0.99009 1.21296 0.98012 0.95798 1.01265 1.17760 0.91951 0.92205 0.88279 1.19524 0.94511 0.90362 1.44796 0.90493 1.25916 0.94807 1.01123 0.92905 1.69803 1.05760 1.30213 1.37558 0.86140 0.80342 0.80937 0.78494 1.18591 1.19988 1.19997 1.20689 1.02348 0.93063 1.06194 1.20056 0.95875 0.97283 0.99687 0.92781 0.92669 0.92680 0.91881 0.91876 0.91490 0.91493 0.90867 0.90861 0.91321 0.91357 0.76425 0.87333 0.85096 0.91089 0.88300 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.15 0.37 -0.59 16 2 C -0.12 -0.84 5.93 -26.73 -0.16 -0.99 16 3 C -0.12 -0.93 5.21 -26.74 -0.14 -1.07 16 4 C -0.12 -1.11 5.59 -26.74 -0.15 -1.26 16 5 C 0.09 1.13 5.47 37.15 0.20 1.33 16 6 O -0.38 -6.02 10.27 -40.33 -0.41 -6.44 16 7 C 0.63 12.42 8.58 54.06 0.46 12.88 16 8 O -0.56 -12.94 13.55 -19.27 -0.26 -13.20 16 9 N -0.63 -11.90 5.31 -14.14 -0.08 -11.98 16 10 C 0.01 0.31 6.31 -83.57 -0.53 -0.22 16 11 C -0.09 -2.33 8.61 -39.79 -0.34 -2.68 16 12 C -0.14 -3.87 8.61 -39.26 -0.34 -4.21 16 13 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 14 C -0.46 -12.27 9.02 -37.86 -0.34 -12.62 16 15 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 16 C 0.07 1.74 5.42 -17.34 -0.09 1.65 16 17 N -0.81 -21.54 10.61 55.55 0.59 -20.95 16 18 Si 0.92 19.10 29.56 -169.99 -5.03 14.07 16 19 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 C -0.20 -4.89 9.74 -39.26 -0.38 -5.27 16 23 C -0.11 -2.39 9.90 -39.79 -0.39 -2.78 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.40 6.06 8.92 -40.82 -0.36 5.70 16 36 H 0.11 2.76 6.22 -52.49 -0.33 2.43 16 37 H 0.13 3.68 6.15 -52.49 -0.32 3.36 16 38 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 39 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 40 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 337.60 15.07 5.09 5.09 Total: -1.00 -30.10 337.60 -8.58 -38.68 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.06 Total: 8.44 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -2.42 Total: -13.72 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.51 Total: -32.92 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.68 Total: -19.64 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.10 -8.58 -38.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193768046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.647 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds