Wall clock time and date at job start Mon Mar 30 2020 01:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47390 * 2 1 4 4 C 1.52990 * 109.47724 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47452 * 180.02562 * 4 3 2 6 6 O 1.45200 * 109.47375 * 180.02562 * 5 4 3 7 7 C 1.34643 * 117.00100 * 179.97438 * 6 5 4 8 8 O 1.21501 * 120.00131 * 359.97438 * 7 6 5 9 9 N 1.34784 * 120.00030 * 179.97438 * 7 6 5 10 10 C 1.39253 * 119.99835 * 184.28993 * 9 7 6 11 11 C 1.39476 * 119.83521 * 324.70866 * 10 9 7 12 12 C 1.36373 * 120.16992 * 180.27857 * 11 10 9 13 13 C 1.40872 * 119.82895 * 359.47663 * 12 11 10 14 14 C 1.41152 * 120.16720 * 180.23567 * 13 12 11 15 15 H 1.08007 * 119.99578 * 215.05567 * 14 13 12 16 16 C 1.39895 * 120.00413 * 35.04858 * 14 13 12 17 17 N 1.30884 * 119.99616 * 355.55263 * 16 14 13 18 18 Si 1.86799 * 120.00168 * 175.54398 * 16 14 13 19 19 H 1.48500 * 109.47022 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47072 * 120.00507 * 18 16 14 21 21 H 1.48498 * 109.47004 * 240.00267 * 18 16 14 22 22 C 1.40875 * 119.66840 * 0.54354 * 13 12 11 23 23 C 1.36373 * 119.82503 * 359.70715 * 22 13 12 24 24 H 1.09002 * 109.46871 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47147 * 299.99594 * 1 2 3 26 26 H 1.08999 * 109.47247 * 60.00308 * 1 2 3 27 27 H 1.09001 * 109.47294 * 239.99978 * 2 1 3 28 28 H 1.09005 * 109.47396 * 120.00124 * 2 1 3 29 29 H 1.09009 * 109.46738 * 60.00008 * 3 2 1 30 30 H 1.08997 * 109.47073 * 300.00693 * 3 2 1 31 31 H 1.09001 * 109.47124 * 59.99878 * 4 3 2 32 32 H 1.09005 * 109.47232 * 300.00228 * 4 3 2 33 33 H 1.09001 * 109.47357 * 59.99651 * 5 4 3 34 34 H 1.09003 * 109.47216 * 299.99818 * 5 4 3 35 35 H 0.96994 * 119.99738 * 4.28580 * 9 7 6 36 36 H 1.07999 * 119.91491 * 359.97438 * 11 10 9 37 37 H 1.08000 * 120.08678 * 179.72304 * 12 11 10 38 38 H 0.96998 * 119.99611 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.08598 * 179.69427 * 22 13 12 40 40 H 1.08007 * 119.91177 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8850 0.0013 6 8 5.5319 2.8851 0.0013 7 6 6.1431 4.0848 0.0013 8 8 5.4814 5.1038 0.0008 9 7 7.4891 4.1554 0.0018 10 6 8.1214 5.3928 0.0920 11 6 7.5541 6.5084 -0.5236 12 6 8.1704 7.7224 -0.4444 13 6 9.3773 7.8501 0.2708 14 6 10.0187 9.1043 0.3616 15 1 11.0973 9.1598 0.3699 16 6 9.2574 10.2752 0.4406 17 7 7.9535 10.2159 0.3428 18 14 10.1016 11.9234 0.6859 19 1 11.5705 11.7203 0.7650 20 1 9.7867 12.8160 -0.4584 21 1 9.6186 12.5443 1.9454 22 6 9.9444 6.7187 0.8895 23 6 9.3190 5.5103 0.7972 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.6766 1.9563 -0.8899 31 1 3.9337 0.9286 -0.8891 32 1 3.9329 0.9288 0.8909 33 1 3.7161 3.3986 0.8912 34 1 3.7170 3.3991 -0.8887 35 1 8.0173 3.3442 -0.0606 36 1 6.6269 6.4096 -1.0685 37 1 7.7322 8.5844 -0.9253 38 1 7.4256 11.0277 0.3980 39 1 10.8720 6.8079 1.4353 40 1 9.7523 4.6420 1.2713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193768046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:48 Heat of formation + Delta-G solvation = -100.025343 kcal Electronic energy + Delta-G solvation = -20291.663805 eV Core-core repulsion = 17069.708039 eV Total energy + Delta-G solvation = -3221.955766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.76577 -39.70690 -37.96427 -36.59440 -36.22608 -34.77100 -32.48272 -31.45460 -30.80492 -27.62342 -26.60206 -23.81650 -23.13945 -22.69272 -22.06443 -21.65070 -19.78345 -19.22979 -18.21715 -17.86208 -17.32913 -16.80151 -16.48589 -15.78133 -15.35640 -15.10920 -14.76118 -14.62627 -14.46163 -14.00995 -13.82435 -13.74440 -13.46871 -13.36646 -12.88234 -12.66789 -12.53254 -12.36218 -12.26001 -12.07698 -11.90750 -11.78319 -11.70333 -11.56680 -11.47692 -11.38579 -11.00578 -10.66553 -9.47841 -8.81380 -8.50576 -6.34148 0.74164 1.12122 1.16770 1.40305 1.45532 1.56237 1.83487 2.24254 2.80324 3.22080 3.67339 3.86917 3.87667 4.09498 4.20547 4.29872 4.39650 4.42589 4.45702 4.61141 4.74410 4.80989 4.91885 4.98544 5.03652 5.08632 5.11850 5.14906 5.25885 5.31267 5.35894 5.39781 5.41702 5.49431 5.69724 5.82537 6.04602 6.12933 6.32109 6.54294 6.69184 6.95284 7.00251 7.38729 8.42665 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038737 B = 0.002734 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.650602 B =10238.397415 C =10827.336193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.116 4.116 4 C -0.108 4.108 5 C 0.079 3.921 6 O -0.365 6.365 7 C 0.636 3.364 8 O -0.599 6.599 9 N -0.619 5.619 10 C 0.025 3.975 11 C -0.106 4.106 12 C -0.167 4.167 13 C 0.068 3.932 14 C -0.492 4.492 15 H 0.082 0.918 16 C 0.021 3.979 17 N -0.845 5.845 18 Si 0.992 3.008 19 H -0.253 1.253 20 H -0.268 1.268 21 H -0.270 1.270 22 C -0.207 4.207 23 C -0.100 4.100 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.424 0.576 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.283 0.717 39 H 0.118 0.882 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.020 -16.914 -0.235 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.154 4.154 4 C -0.145 4.145 5 C 0.004 3.996 6 O -0.279 6.279 7 C 0.390 3.610 8 O -0.489 6.489 9 N -0.271 5.271 10 C -0.067 4.067 11 C -0.126 4.126 12 C -0.188 4.188 13 C 0.065 3.935 14 C -0.523 4.523 15 H 0.100 0.900 16 C -0.191 4.191 17 N -0.473 5.473 18 Si 0.813 3.187 19 H -0.176 1.176 20 H -0.193 1.193 21 H -0.195 1.195 22 C -0.227 4.227 23 C -0.120 4.120 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.262 0.738 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.136 0.864 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.645 -16.371 -0.227 18.515 hybrid contribution 0.094 0.807 0.018 0.813 sum -8.550 -15.564 -0.209 17.760 Atomic orbital electron populations 1.21787 0.95419 1.02097 1.01900 1.21492 0.96196 0.95514 1.02666 1.21533 0.92720 0.98347 1.02787 1.21581 0.96257 0.92329 1.04363 1.23273 0.73552 1.00385 1.02362 1.86202 1.25198 1.29576 1.86938 1.18332 0.83829 0.82202 0.76639 1.90988 1.65397 1.36074 1.56484 1.41370 1.02319 1.09095 1.74320 1.17129 0.97139 0.84197 1.08267 1.20674 0.98902 0.93215 0.99821 1.21162 0.99101 0.95810 1.02708 1.18113 0.92403 0.93677 0.89279 1.19814 0.94933 0.91208 1.46320 0.89966 1.26882 0.95292 1.04876 0.92011 1.69918 1.07345 1.31433 1.38624 0.85001 0.79429 0.75769 0.78489 1.17620 1.19324 1.19515 1.20967 1.02962 0.93025 1.05701 1.20416 0.94945 0.98116 0.98483 0.92019 0.92769 0.92742 0.91415 0.91456 0.91581 0.91501 0.90045 0.90132 0.91924 0.91765 0.73816 0.88408 0.87544 0.90690 0.86418 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 71.98 0.71 -0.96 16 2 C -0.12 -1.40 5.93 30.59 0.18 -1.21 16 3 C -0.12 -1.63 5.21 30.59 0.16 -1.47 16 4 C -0.11 -1.80 5.59 30.59 0.17 -1.63 16 5 C 0.08 1.96 5.47 71.98 0.39 2.35 16 6 O -0.37 -11.00 10.27 -55.53 -0.57 -11.57 16 7 C 0.64 24.29 8.58 129.79 1.11 25.40 16 8 O -0.60 -28.01 13.55 19.84 0.27 -27.74 16 9 N -0.62 -22.17 5.31 -429.06 -2.28 -24.44 16 10 C 0.03 1.11 6.31 38.56 0.24 1.35 16 11 C -0.11 -5.48 8.61 22.13 0.19 -5.29 16 12 C -0.17 -9.42 8.61 22.48 0.19 -9.22 16 13 C 0.07 3.70 5.55 -21.27 -0.12 3.59 16 14 C -0.49 -26.71 9.02 23.39 0.21 -26.50 16 15 H 0.08 4.20 7.85 -2.91 -0.02 4.18 16 16 C 0.02 1.09 5.42 85.24 0.46 1.55 16 17 N -0.85 -46.86 10.61 21.82 0.23 -46.63 16 18 Si 0.99 39.49 29.56 68.60 2.03 41.52 16 19 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 20 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 22 C -0.21 -9.74 9.74 22.48 0.22 -9.52 16 23 C -0.10 -4.13 9.90 22.13 0.22 -3.91 16 24 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.42 11.42 8.92 -92.71 -0.83 10.60 16 36 H 0.10 5.19 6.22 -2.91 -0.02 5.17 16 37 H 0.11 6.40 6.15 -2.91 -0.02 6.38 16 38 H 0.28 14.32 8.30 -92.71 -0.77 13.55 16 39 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 40 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -66.76 337.60 4.24 -62.52 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.20 Total: 31.81 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: 4.35 Total: -25.47 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -2.05 Total: -71.08 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.30 Total: -39.31 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -66.76 4.24 -62.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193768046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.502 kcal (2) G-P(sol) polarization free energy of solvation -66.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds