Wall clock time and date at job start Mon Mar 30 2020 01:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47094 * 2 1 4 4 C 1.53002 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47094 * 179.97438 * 4 3 2 6 6 O 1.45198 * 109.47210 * 179.97438 * 5 4 3 7 7 C 1.34639 * 117.00163 * 179.97438 * 6 5 4 8 8 O 1.21513 * 120.00059 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00521 * 180.27427 * 7 6 5 10 10 C 1.39141 * 120.00554 * 175.53636 * 9 7 6 11 11 C 1.38643 * 120.28528 * 34.55944 * 10 9 7 12 12 C 1.38216 * 120.03500 * 180.02562 * 11 10 9 13 13 C 1.38867 * 120.61446 * 359.97271 * 12 11 10 14 14 C 1.36460 * 120.57984 * 0.02562 * 13 12 11 15 15 C 1.40735 * 119.93878 * 359.72741 * 14 13 12 16 16 C 1.41075 * 120.29871 * 180.27665 * 15 14 13 17 17 H 1.08007 * 119.99900 * 214.94311 * 16 15 14 18 18 C 1.39947 * 120.00455 * 34.93943 * 16 15 14 19 19 N 1.30862 * 119.99614 * 355.65414 * 18 16 15 20 20 Si 1.86802 * 120.00633 * 175.64973 * 18 16 15 21 21 H 1.48498 * 109.46944 * 59.99925 * 20 18 16 22 22 H 1.48493 * 109.47150 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.46911 * 300.00454 * 20 18 16 24 24 H 1.08998 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47173 * 300.00178 * 1 2 3 26 26 H 1.09007 * 109.47044 * 59.99999 * 1 2 3 27 27 H 1.09006 * 109.47019 * 240.00110 * 2 1 3 28 28 H 1.08998 * 109.47193 * 120.00271 * 2 1 3 29 29 H 1.08998 * 109.47256 * 59.99872 * 3 2 1 30 30 H 1.09007 * 109.47176 * 299.99920 * 3 2 1 31 31 H 1.09006 * 109.47019 * 60.00110 * 4 3 2 32 32 H 1.08998 * 109.47193 * 300.00271 * 4 3 2 33 33 H 1.08998 * 109.47256 * 59.99872 * 5 4 3 34 34 H 1.08998 * 109.47322 * 300.00192 * 5 4 3 35 35 H 0.97007 * 119.99384 * 355.54203 * 9 7 6 36 36 H 1.07999 * 119.97962 * 359.97419 * 11 10 9 37 37 H 1.07997 * 119.69122 * 179.97438 * 12 11 10 38 38 H 1.08005 * 119.71162 * 180.02562 * 13 12 11 39 39 H 1.08001 * 120.02843 * 179.97438 * 14 13 12 40 40 H 0.96999 * 120.00099 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 8 5.5320 2.8851 0.0012 7 6 6.1433 4.0847 0.0003 8 8 5.4815 5.1038 -0.0010 9 7 7.4892 4.1554 -0.0042 10 6 8.1208 5.3915 -0.0990 11 6 7.5591 6.5110 0.4956 12 6 8.1907 7.7366 0.3979 13 6 9.3890 7.8615 -0.2926 14 6 9.9640 6.7762 -0.8873 15 6 9.3441 5.5159 -0.7983 16 6 9.9349 4.3877 -1.4053 17 1 9.3117 3.6200 -1.8399 18 6 11.3282 4.2632 -1.4444 19 7 12.0845 5.2319 -0.9947 20 14 12.1087 2.7144 -2.1383 21 1 11.6933 2.5423 -3.5536 22 1 13.5873 2.8303 -2.0665 23 1 11.6656 1.5392 -1.3461 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 0.9285 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 3.7163 3.3994 0.8895 34 1 3.7171 3.3984 -0.8904 35 1 8.0176 3.3442 0.0585 36 1 6.6273 6.4255 1.0348 37 1 7.7481 8.6050 0.8628 38 1 9.8702 8.8261 -0.3595 39 1 10.8959 6.8837 -1.4225 40 1 13.0503 5.1459 -1.0221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193769758.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:52 Heat of formation + Delta-G solvation = -85.686752 kcal Electronic energy + Delta-G solvation = -20702.775703 eV Core-core repulsion = 17481.441705 eV Total energy + Delta-G solvation = -3221.333998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.10076 -37.98780 -36.54414 -35.49511 -33.88115 -33.61926 -31.62842 -29.61671 -28.47649 -26.39109 -25.20493 -22.64575 -21.63395 -21.27649 -20.97029 -19.83283 -18.13378 -17.24080 -16.55618 -16.44431 -15.68339 -15.57260 -14.95025 -14.21929 -14.06428 -13.96740 -13.75796 -13.20479 -12.81755 -12.73826 -12.59222 -12.33623 -11.79319 -11.64250 -11.42332 -11.35471 -11.26835 -11.16790 -11.02228 -10.98258 -10.80176 -10.49203 -10.26319 -10.22781 -9.83870 -9.55954 -9.25447 -9.03991 -7.32978 -7.00150 -6.64077 -4.46377 2.57558 2.74089 2.93362 3.05065 3.07164 3.19608 3.58656 3.91507 4.47179 4.65200 4.65696 4.77735 4.98180 5.01482 5.13875 5.35339 5.36776 5.52224 5.56328 5.60033 5.61064 5.77066 5.79831 5.91851 6.06961 6.10713 6.28717 6.45717 6.55086 6.76069 6.91888 7.05225 7.18779 7.25737 7.63506 7.70930 7.96835 8.07142 8.10780 8.37744 8.56055 8.82066 8.85558 9.09780 10.21892 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.003796 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.300515 B = 7374.859591 C = 8790.716724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.117 4.117 4 C -0.120 4.120 5 C 0.088 3.912 6 O -0.376 6.376 7 C 0.635 3.365 8 O -0.572 6.572 9 N -0.615 5.615 10 C 0.032 3.968 11 C -0.093 4.093 12 C -0.216 4.216 13 C -0.118 4.118 14 C -0.138 4.138 15 C 0.099 3.901 16 C -0.470 4.470 17 H 0.075 0.925 18 C 0.074 3.926 19 N -0.807 5.807 20 Si 0.915 3.085 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.410 0.590 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.290 -8.655 1.534 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.155 4.155 4 C -0.158 4.158 5 C 0.013 3.987 6 O -0.291 6.291 7 C 0.388 3.612 8 O -0.461 6.461 9 N -0.264 5.264 10 C -0.061 4.061 11 C -0.113 4.113 12 C -0.235 4.235 13 C -0.137 4.137 14 C -0.158 4.158 15 C 0.095 3.905 16 C -0.500 4.500 17 H 0.093 0.907 18 C -0.142 4.142 19 N -0.434 5.434 20 Si 0.740 3.260 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.190 1.190 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.246 0.754 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.150 0.850 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.443 -8.175 1.550 14.968 hybrid contribution 0.618 -0.942 -0.233 1.150 sum -11.825 -9.117 1.317 14.989 Atomic orbital electron populations 1.21781 0.95837 1.01567 1.01889 1.21510 0.95821 0.96519 1.02275 1.21524 0.94003 0.97325 1.02643 1.21600 0.95333 0.95137 1.03726 1.22868 0.75597 0.97712 1.02531 1.86197 1.23308 1.32020 1.87598 1.18235 0.83862 0.81678 0.77432 1.90930 1.64717 1.34386 1.56116 1.41496 1.01812 1.10183 1.72917 1.17674 0.98713 0.83226 1.06487 1.20688 0.99165 0.92273 0.99166 1.20364 0.98473 0.96179 1.08527 1.20563 0.95723 0.97763 0.99652 1.21177 1.01366 0.90705 1.02556 1.17436 0.89940 0.93508 0.89589 1.19290 0.91359 1.05362 1.34038 0.90661 1.25857 0.97472 0.97714 0.93179 1.69754 1.06331 1.31258 1.36030 0.86257 0.77990 0.81636 0.80159 1.19053 1.20386 1.19022 0.92796 0.92717 0.92702 0.91839 0.91867 0.91583 0.91538 0.90781 0.90841 0.91525 0.91434 0.75371 0.87100 0.89009 0.89152 0.84995 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.12 -0.98 5.21 -26.73 -0.14 -1.12 16 4 C -0.12 -1.24 5.59 -26.73 -0.15 -1.39 16 5 C 0.09 1.21 5.47 37.16 0.20 1.41 16 6 O -0.38 -6.57 10.27 -40.32 -0.41 -6.98 16 7 C 0.63 13.30 8.59 54.06 0.46 13.77 16 8 O -0.57 -13.27 13.54 -19.28 -0.26 -13.53 16 9 N -0.62 -13.41 4.97 -13.88 -0.07 -13.48 16 10 C 0.03 0.78 6.34 -83.17 -0.53 0.26 16 11 C -0.09 -2.26 8.69 -39.44 -0.34 -2.60 16 12 C -0.22 -5.02 10.04 -39.36 -0.40 -5.41 16 13 C -0.12 -2.79 9.96 -39.99 -0.40 -3.19 16 14 C -0.14 -3.55 8.61 -39.28 -0.34 -3.88 16 15 C 0.10 2.58 5.56 -106.65 -0.59 1.99 16 16 C -0.47 -11.90 8.22 -37.87 -0.31 -12.21 16 17 H 0.08 1.83 7.63 -52.48 -0.40 1.43 16 18 C 0.07 1.79 5.42 -17.32 -0.09 1.70 16 19 N -0.81 -20.23 10.62 55.55 0.59 -19.64 16 20 Si 0.91 18.25 29.56 -169.99 -5.03 13.22 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.41 8.21 8.21 -40.82 -0.33 7.87 16 36 H 0.11 2.67 6.19 -52.49 -0.32 2.34 16 37 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 38 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 39 H 0.13 3.47 6.15 -52.49 -0.32 3.15 16 40 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 LS Contribution 335.99 15.07 5.06 5.06 Total: -1.00 -28.41 335.99 -8.54 -36.95 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.01 Total: 10.79 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -2.41 Total: -12.39 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.52 Total: -33.12 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.68 Total: -20.51 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.41 -8.54 -36.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193769758.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.736 kcal (2) G-P(sol) polarization free energy of solvation -28.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds