Wall clock time and date at job start Mon Mar 30 2020 01:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47094 * 2 1 4 4 C 1.53002 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47094 * 179.97438 * 4 3 2 6 6 O 1.45198 * 109.47210 * 179.97438 * 5 4 3 7 7 C 1.34639 * 117.00163 * 179.97438 * 6 5 4 8 8 O 1.21513 * 120.00059 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00521 * 180.27427 * 7 6 5 10 10 C 1.39141 * 120.00554 * 175.53636 * 9 7 6 11 11 C 1.38643 * 120.28528 * 34.55944 * 10 9 7 12 12 C 1.38216 * 120.03500 * 180.02562 * 11 10 9 13 13 C 1.38867 * 120.61446 * 359.97271 * 12 11 10 14 14 C 1.36460 * 120.57984 * 0.02562 * 13 12 11 15 15 C 1.40735 * 119.93878 * 359.72741 * 14 13 12 16 16 C 1.41075 * 120.29871 * 180.27665 * 15 14 13 17 17 H 1.08007 * 119.99900 * 214.94311 * 16 15 14 18 18 C 1.39947 * 120.00455 * 34.93943 * 16 15 14 19 19 N 1.30862 * 119.99614 * 355.65414 * 18 16 15 20 20 Si 1.86802 * 120.00633 * 175.64973 * 18 16 15 21 21 H 1.48498 * 109.46944 * 59.99925 * 20 18 16 22 22 H 1.48493 * 109.47150 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.46911 * 300.00454 * 20 18 16 24 24 H 1.08998 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47173 * 300.00178 * 1 2 3 26 26 H 1.09007 * 109.47044 * 59.99999 * 1 2 3 27 27 H 1.09006 * 109.47019 * 240.00110 * 2 1 3 28 28 H 1.08998 * 109.47193 * 120.00271 * 2 1 3 29 29 H 1.08998 * 109.47256 * 59.99872 * 3 2 1 30 30 H 1.09007 * 109.47176 * 299.99920 * 3 2 1 31 31 H 1.09006 * 109.47019 * 60.00110 * 4 3 2 32 32 H 1.08998 * 109.47193 * 300.00271 * 4 3 2 33 33 H 1.08998 * 109.47256 * 59.99872 * 5 4 3 34 34 H 1.08998 * 109.47322 * 300.00192 * 5 4 3 35 35 H 0.97007 * 119.99384 * 355.54203 * 9 7 6 36 36 H 1.07999 * 119.97962 * 359.97419 * 11 10 9 37 37 H 1.07997 * 119.69122 * 179.97438 * 12 11 10 38 38 H 1.08005 * 119.71162 * 180.02562 * 13 12 11 39 39 H 1.08001 * 120.02843 * 179.97438 * 14 13 12 40 40 H 0.96999 * 120.00099 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 8 5.5320 2.8851 0.0012 7 6 6.1433 4.0847 0.0003 8 8 5.4815 5.1038 -0.0010 9 7 7.4892 4.1554 -0.0042 10 6 8.1208 5.3915 -0.0990 11 6 7.5591 6.5110 0.4956 12 6 8.1907 7.7366 0.3979 13 6 9.3890 7.8615 -0.2926 14 6 9.9640 6.7762 -0.8873 15 6 9.3441 5.5159 -0.7983 16 6 9.9349 4.3877 -1.4053 17 1 9.3117 3.6200 -1.8399 18 6 11.3282 4.2632 -1.4444 19 7 12.0845 5.2319 -0.9947 20 14 12.1087 2.7144 -2.1383 21 1 11.6933 2.5423 -3.5536 22 1 13.5873 2.8303 -2.0665 23 1 11.6656 1.5392 -1.3461 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 0.9285 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 3.7163 3.3994 0.8895 34 1 3.7171 3.3984 -0.8904 35 1 8.0176 3.3442 0.0585 36 1 6.6273 6.4255 1.0348 37 1 7.7481 8.6050 0.8628 38 1 9.8702 8.8261 -0.3595 39 1 10.8959 6.8837 -1.4225 40 1 13.0503 5.1459 -1.0221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193769758.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:51 Heat of formation + Delta-G solvation = -100.021171 kcal Electronic energy + Delta-G solvation = -20703.397290 eV Core-core repulsion = 17481.441705 eV Total energy + Delta-G solvation = -3221.955585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.73681 -39.69454 -37.86091 -36.54156 -35.65210 -35.47377 -32.48206 -31.50353 -30.26373 -27.45109 -26.94059 -24.05460 -22.98179 -22.63325 -22.00595 -21.52552 -19.78806 -19.09731 -18.14667 -17.83499 -17.34634 -16.69058 -16.45586 -15.94011 -15.33680 -15.09257 -14.72841 -14.59696 -14.44872 -14.25833 -13.78075 -13.67437 -13.47827 -13.04172 -12.83898 -12.76071 -12.51881 -12.25074 -12.15401 -12.11409 -12.02267 -11.75352 -11.65960 -11.54534 -11.38982 -11.30931 -11.06108 -10.86901 -9.25304 -8.86242 -8.47035 -6.38458 0.80344 1.04304 1.23924 1.43061 1.52930 1.55414 1.87352 2.24370 2.80268 3.28192 3.66377 3.88012 3.89146 4.10691 4.21588 4.30594 4.40201 4.48316 4.61123 4.62129 4.72530 4.81081 4.81608 4.97500 5.04179 5.06625 5.12305 5.17454 5.25650 5.31751 5.35851 5.40312 5.45167 5.50122 5.75469 5.85486 6.10367 6.16772 6.24250 6.57873 6.68228 6.93363 6.97998 7.39858 8.41177 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018425 B = 0.003796 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.300515 B = 7374.859591 C = 8790.716724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.114 4.114 4 C -0.111 4.111 5 C 0.079 3.921 6 O -0.371 6.371 7 C 0.638 3.362 8 O -0.596 6.596 9 N -0.615 5.615 10 C 0.024 3.976 11 C -0.105 4.105 12 C -0.216 4.216 13 C -0.120 4.120 14 C -0.160 4.160 15 C 0.071 3.929 16 C -0.492 4.492 17 H 0.077 0.923 18 C 0.034 3.966 19 N -0.834 5.834 20 Si 0.986 3.014 21 H -0.264 1.264 22 H -0.272 1.272 23 H -0.258 1.258 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.416 0.584 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.869 -9.898 1.564 16.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.151 4.151 4 C -0.148 4.148 5 C 0.005 3.995 6 O -0.285 6.285 7 C 0.393 3.607 8 O -0.488 6.488 9 N -0.265 5.265 10 C -0.069 4.069 11 C -0.126 4.126 12 C -0.235 4.235 13 C -0.138 4.138 14 C -0.181 4.181 15 C 0.068 3.932 16 C -0.522 4.522 17 H 0.095 0.905 18 C -0.179 4.179 19 N -0.461 5.461 20 Si 0.807 3.193 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.182 1.182 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.254 0.746 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.046 -9.434 1.589 16.178 hybrid contribution 0.710 -0.521 -0.214 0.906 sum -12.335 -9.955 1.375 15.911 Atomic orbital electron populations 1.21782 0.95223 1.02089 1.01993 1.21501 0.96341 0.95622 1.02537 1.21519 0.92373 0.98287 1.02938 1.21604 0.96524 0.92569 1.04121 1.23277 0.73395 1.00267 1.02541 1.86226 1.25419 1.29869 1.86960 1.18231 0.83499 0.82301 0.76707 1.90903 1.65172 1.35574 1.57125 1.41409 1.02382 1.09666 1.73042 1.17794 0.98627 0.84388 1.06128 1.20861 0.99370 0.92820 0.99506 1.20703 0.98140 0.96806 1.07863 1.20825 0.95786 0.98369 0.98838 1.21207 1.01505 0.91572 1.03779 1.17759 0.90835 0.94122 0.90525 1.19483 0.92310 1.05495 1.34950 0.90516 1.26701 0.97464 1.00753 0.93014 1.69826 1.06879 1.32983 1.36459 0.85182 0.77150 0.77658 0.79314 1.18819 1.19649 1.18194 0.92102 0.92570 0.92680 0.91689 0.91540 0.91211 0.91412 0.90563 0.90272 0.91310 0.91736 0.74631 0.87070 0.86181 0.86501 0.86281 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.12 -1.56 5.93 30.60 0.18 -1.38 16 3 C -0.11 -1.70 5.21 30.60 0.16 -1.54 16 4 C -0.11 -2.09 5.59 30.60 0.17 -1.92 16 5 C 0.08 2.11 5.47 71.98 0.39 2.50 16 6 O -0.37 -12.66 10.27 -55.48 -0.57 -13.23 16 7 C 0.64 26.68 8.59 129.79 1.11 27.79 16 8 O -0.60 -27.65 13.54 19.80 0.27 -27.38 16 9 N -0.62 -26.96 4.97 -428.22 -2.13 -29.09 16 10 C 0.02 1.20 6.34 38.87 0.25 1.44 16 11 C -0.11 -5.11 8.69 22.36 0.19 -4.92 16 12 C -0.22 -9.82 10.04 22.42 0.22 -9.60 16 13 C -0.12 -5.58 9.96 22.00 0.22 -5.36 16 14 C -0.16 -8.36 8.61 22.46 0.19 -8.17 16 15 C 0.07 3.78 5.56 -21.18 -0.12 3.66 16 16 C -0.49 -25.20 8.22 23.38 0.19 -25.01 16 17 H 0.08 3.77 7.63 -2.91 -0.02 3.75 16 18 C 0.03 1.65 5.42 85.25 0.46 2.11 16 19 N -0.83 -42.13 10.62 21.83 0.23 -41.90 16 20 Si 0.99 36.92 29.56 68.60 2.03 38.95 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 22 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 23 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.42 16.76 8.21 -92.70 -0.76 16.00 16 36 H 0.11 5.34 6.19 -2.91 -0.02 5.32 16 37 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 38 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 39 H 0.12 6.43 6.15 -2.91 -0.02 6.41 16 40 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 Total: -1.00 -60.23 335.99 4.45 -55.77 By element: Atomic # 1 Polarization: 38.03 SS G_CDS: 0.27 Total: 38.30 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 4.35 Total: -21.42 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -1.89 Total: -70.99 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -0.30 Total: -40.62 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Total: -60.23 4.45 -55.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193769758.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.248 kcal (2) G-P(sol) polarization free energy of solvation -60.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds