Wall clock time and date at job start Mon Mar 30 2020 01:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47480 * 2 1 4 4 C 1.52996 * 109.47480 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47530 * 179.97438 * 4 3 2 6 6 O 1.45202 * 109.47312 * 179.97438 * 5 4 3 7 7 C 1.34643 * 116.99768 * 180.02562 * 6 5 4 8 8 O 1.21511 * 120.00204 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99948 * 179.97438 * 7 6 5 10 10 C 1.39959 * 119.99966 * 174.28275 * 9 7 6 11 11 C 1.39289 * 119.94457 * 145.42747 * 10 9 7 12 12 C 1.38490 * 120.42984 * 180.02562 * 11 10 9 13 13 C 1.37685 * 120.32240 * 0.27312 * 12 11 10 14 14 C 1.40742 * 119.87672 * 359.43352 * 13 12 11 15 15 C 1.41421 * 120.20893 * 180.31963 * 14 13 12 16 16 H 1.07996 * 119.99552 * 214.44145 * 15 14 13 17 17 C 1.39930 * 119.99687 * 34.43535 * 15 14 13 18 18 N 1.30831 * 120.00003 * 5.54661 * 17 15 14 19 19 Si 1.86799 * 119.99824 * 185.54089 * 17 15 14 20 20 H 1.48499 * 109.46968 * 90.00338 * 19 17 15 21 21 H 1.48496 * 109.46999 * 210.00326 * 19 17 15 22 22 H 1.48496 * 109.47295 * 330.00142 * 19 17 15 23 23 C 1.38231 * 119.95116 * 325.40517 * 10 9 7 24 24 H 1.08998 * 109.47266 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47144 * 300.00463 * 1 2 3 26 26 H 1.08995 * 109.46927 * 60.00052 * 1 2 3 27 27 H 1.08996 * 109.47251 * 239.99311 * 2 1 3 28 28 H 1.09002 * 109.46734 * 119.99622 * 2 1 3 29 29 H 1.08996 * 109.47441 * 59.99427 * 3 2 1 30 30 H 1.09004 * 109.46411 * 299.99893 * 3 2 1 31 31 H 1.09005 * 109.47144 * 59.99537 * 4 3 2 32 32 H 1.08995 * 109.46927 * 299.99948 * 4 3 2 33 33 H 1.09005 * 109.46964 * 59.99820 * 5 4 3 34 34 H 1.09004 * 109.46707 * 300.00105 * 5 4 3 35 35 H 0.96997 * 119.99891 * 354.28978 * 9 7 6 36 36 H 1.08001 * 119.78226 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.83932 * 180.02562 * 12 11 10 38 38 H 1.07991 * 120.06338 * 179.70521 * 13 12 11 39 39 H 0.97004 * 119.99692 * 179.97438 * 18 17 15 40 40 H 1.08005 * 120.15948 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8849 0.0000 6 8 5.5321 2.8848 0.0012 7 6 6.1434 4.0845 0.0014 8 8 5.4816 5.1036 0.0000 9 7 7.4893 4.1551 0.0030 10 6 8.1252 5.3960 -0.1176 11 6 9.3220 5.6323 0.5548 12 6 9.9594 6.8567 0.4430 13 6 9.4136 7.8565 -0.3303 14 6 8.2080 7.6301 -1.0204 15 6 7.6446 8.6498 -1.8220 16 1 6.5717 8.7493 -1.8939 17 6 8.4775 9.5299 -2.5220 18 7 9.7725 9.3439 -2.5227 19 14 7.7402 10.9701 -3.4555 20 1 7.6602 12.1518 -2.5597 21 1 8.5966 11.2925 -4.6250 22 1 6.3776 10.6110 -3.9240 23 6 7.5649 6.3851 -0.9040 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9562 -0.8901 31 1 3.9337 0.9284 -0.8891 32 1 3.9329 0.9288 0.8908 33 1 3.7164 3.3993 0.8896 34 1 3.7171 3.3982 -0.8905 35 1 8.0173 3.3458 0.0877 36 1 9.7556 4.8556 1.1673 37 1 10.8872 7.0294 0.9682 38 1 9.9117 8.8113 -0.4107 39 1 10.3498 9.9538 -3.0082 40 1 6.6373 6.2026 -1.4264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193770489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:54 Heat of formation + Delta-G solvation = -103.088790 kcal Electronic energy + Delta-G solvation = -20398.967924 eV Core-core repulsion = 17176.879317 eV Total energy + Delta-G solvation = -3222.088607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.82005 -39.66935 -37.95687 -36.59257 -36.25411 -34.89167 -32.48897 -31.76201 -30.05534 -27.38408 -27.15771 -24.12634 -22.90522 -22.71063 -22.08805 -21.68475 -19.95478 -19.28408 -17.91313 -17.76466 -17.29115 -16.54183 -16.49681 -16.39578 -15.40193 -15.10072 -14.82987 -14.74602 -14.50826 -14.08146 -13.78458 -13.68181 -13.51813 -13.01211 -12.95199 -12.84409 -12.54682 -12.28971 -12.21305 -12.15907 -12.03849 -11.77988 -11.59655 -11.59299 -11.41655 -11.34249 -11.17276 -10.88143 -9.35218 -8.82576 -8.54904 -6.41195 0.75404 0.95851 1.12650 1.37309 1.46789 1.51364 1.79932 2.23156 2.77126 3.12474 3.65831 3.85656 3.86027 4.08524 4.20047 4.28470 4.39044 4.43816 4.58066 4.60679 4.71680 4.80414 4.90985 4.97559 5.03184 5.05045 5.08022 5.10520 5.15685 5.26335 5.31319 5.38538 5.39600 5.49144 5.69278 5.79158 6.02081 6.09730 6.31483 6.45183 6.66572 6.93129 6.97877 7.29035 8.41039 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022313 B = 0.003184 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.576519 B = 8790.813480 C = 9892.809042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.116 4.116 4 C -0.108 4.108 5 C 0.078 3.922 6 O -0.363 6.363 7 C 0.642 3.358 8 O -0.590 6.590 9 N -0.633 5.633 10 C 0.163 3.837 11 C -0.232 4.232 12 C -0.092 4.092 13 C -0.179 4.179 14 C 0.089 3.911 15 C -0.506 4.506 16 H 0.062 0.938 17 C 0.034 3.966 18 N -0.836 5.836 19 Si 0.985 3.015 20 H -0.260 1.260 21 H -0.264 1.264 22 H -0.267 1.267 23 C -0.227 4.227 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.426 0.574 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.105 0.895 39 H 0.287 0.713 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.329 -15.678 4.194 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.154 4.154 4 C -0.145 4.145 5 C 0.003 3.997 6 O -0.277 6.277 7 C 0.396 3.604 8 O -0.480 6.480 9 N -0.286 5.286 10 C 0.071 3.929 11 C -0.253 4.253 12 C -0.111 4.111 13 C -0.198 4.198 14 C 0.086 3.914 15 C -0.537 4.537 16 H 0.080 0.920 17 C -0.179 4.179 18 N -0.464 5.464 19 Si 0.805 3.195 20 H -0.184 1.184 21 H -0.188 1.188 22 H -0.191 1.191 23 C -0.248 4.248 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.265 0.735 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.550 -15.200 4.083 18.410 hybrid contribution -0.139 0.582 -0.565 0.823 sum -9.689 -14.618 3.518 17.887 Atomic orbital electron populations 1.21789 0.95410 1.02100 1.01912 1.21489 0.96204 0.95502 1.02666 1.21534 0.92655 0.98369 1.02822 1.21588 0.96301 0.92248 1.04399 1.23316 0.73331 1.00517 1.02489 1.86210 1.25377 1.29372 1.86782 1.18252 0.83645 0.82329 0.76193 1.91030 1.65258 1.36150 1.55570 1.41833 1.02718 1.09605 1.74416 1.17326 0.93989 0.84210 0.97401 1.20523 0.97979 0.99465 1.07288 1.20890 0.99133 0.92841 0.98208 1.21360 0.98927 0.99578 0.99985 1.17826 0.92292 0.91228 0.90010 1.19678 0.94169 1.13154 1.26696 0.91983 1.26648 0.94928 0.99985 0.96340 1.69818 1.05122 1.35601 1.35819 0.85172 0.78886 0.77377 0.78022 1.18435 1.18783 1.19075 1.21068 1.03053 0.94729 1.05987 0.92019 0.92665 0.92823 0.91547 0.91328 0.91357 0.91656 0.90258 0.89862 0.91444 0.91993 0.73490 0.84364 0.85153 0.87742 0.90260 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.98 16 2 C -0.12 -1.41 5.93 30.59 0.18 -1.23 16 3 C -0.12 -1.65 5.21 30.59 0.16 -1.49 16 4 C -0.11 -1.83 5.59 30.59 0.17 -1.65 16 5 C 0.08 1.96 5.47 71.98 0.39 2.35 16 6 O -0.36 -11.10 10.27 -55.53 -0.57 -11.67 16 7 C 0.64 24.93 8.47 129.79 1.10 26.03 16 8 O -0.59 -28.07 13.92 19.81 0.28 -27.79 16 9 N -0.63 -23.20 5.34 -429.61 -2.30 -25.49 16 10 C 0.16 7.36 6.25 38.09 0.24 7.60 16 11 C -0.23 -9.51 9.97 22.58 0.23 -9.29 16 12 C -0.09 -4.09 10.02 22.20 0.22 -3.87 16 13 C -0.18 -9.50 8.62 22.75 0.20 -9.30 16 14 C 0.09 5.12 5.50 -21.30 -0.12 5.00 16 15 C -0.51 -29.47 9.04 23.46 0.21 -29.26 16 16 H 0.06 3.63 7.85 -2.91 -0.02 3.61 16 17 C 0.03 1.79 5.31 85.25 0.45 2.25 16 18 N -0.84 -45.02 10.97 21.82 0.24 -44.78 16 19 Si 0.98 40.62 29.56 68.60 2.03 42.65 16 20 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 C -0.23 -12.29 8.39 22.85 0.19 -12.10 16 24 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.28 8.14 -2.38 -0.02 1.27 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.43 11.78 8.93 -92.71 -0.83 10.96 16 36 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 38 H 0.10 5.77 6.48 -2.92 -0.02 5.75 16 39 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 40 H 0.09 4.89 6.51 -2.91 -0.02 4.87 16 Total: -1.00 -68.06 338.81 4.22 -63.84 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.20 Total: 29.20 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 4.34 Total: -25.95 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -2.06 Total: -70.28 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -0.29 Total: -39.46 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -68.06 4.22 -63.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193770489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.252 kcal (2) G-P(sol) polarization free energy of solvation -68.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds