Wall clock time and date at job start Mon Mar 30 2020 02:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47042 * 2 1 4 4 C 1.52997 * 109.47696 * 120.00779 * 2 1 3 5 5 O 1.45201 * 109.46883 * 64.99170 * 4 2 1 6 6 C 1.34666 * 116.99779 * 180.02562 * 5 4 2 7 7 O 1.21511 * 119.99775 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00277 * 180.02562 * 6 5 4 9 9 C 1.37189 * 119.99585 * 0.02562 * 8 6 5 10 10 H 1.08002 * 119.99739 * 219.34379 * 9 8 6 11 11 C 1.38889 * 120.00255 * 39.34672 * 9 8 6 12 12 N 1.31466 * 119.99922 * 208.49502 * 11 9 8 13 13 Si 1.86794 * 119.99873 * 28.49663 * 11 9 8 14 14 H 1.48497 * 109.47173 * 95.26786 * 13 11 9 15 15 H 1.48498 * 109.47043 * 215.26750 * 13 11 9 16 16 H 1.48496 * 109.47241 * 335.27116 * 13 11 9 17 17 C 1.46494 * 120.00151 * 180.02562 * 8 6 5 18 18 C 1.50697 * 109.47318 * 269.78660 * 17 8 6 19 19 C 1.38236 * 119.99926 * 88.27938 * 18 17 8 20 20 C 1.38238 * 120.00306 * 179.97438 * 19 18 17 21 21 C 1.38244 * 119.99682 * 359.97438 * 20 19 18 22 22 C 1.38238 * 119.99961 * 0.27902 * 21 20 19 23 23 C 1.38233 * 119.99582 * 359.51044 * 22 21 20 24 24 H 1.09005 * 109.46744 * 299.99605 * 1 2 3 25 25 H 1.08998 * 109.47267 * 59.99069 * 1 2 3 26 26 H 1.08998 * 109.47036 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46687 * 240.00943 * 2 1 3 28 28 H 1.09008 * 109.46933 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47788 * 300.00021 * 3 2 1 30 30 H 1.08997 * 109.47126 * 60.00830 * 3 2 1 31 31 H 1.09002 * 109.46651 * 305.00063 * 4 2 1 32 32 H 1.08998 * 109.47358 * 184.99903 * 4 2 1 33 33 H 0.97003 * 119.99824 * 179.97438 * 12 11 9 34 34 H 1.08998 * 109.47415 * 149.78794 * 17 8 6 35 35 H 1.09006 * 109.47521 * 29.78692 * 17 8 6 36 36 H 1.08005 * 120.00102 * 359.97438 * 19 18 17 37 37 H 1.07992 * 120.00536 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.00076 * 180.02562 * 21 20 19 39 39 H 1.07996 * 119.99963 * 179.72568 * 22 21 20 40 40 H 1.08000 * 119.99812 * 180.27445 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 8 1.6559 -2.1204 1.1908 6 6 2.0302 -2.9007 2.2226 7 8 2.6603 -2.4253 3.1464 8 7 1.7061 -4.2089 2.2305 9 6 0.9951 -4.7456 1.1872 10 1 0.2238 -5.4769 1.3790 11 6 1.2673 -4.3488 -0.1157 12 7 0.3177 -4.3798 -1.0242 13 14 2.9828 -3.7710 -0.5769 14 1 3.7517 -4.9074 -1.1449 15 1 2.8850 -2.6860 -1.5860 16 1 3.6753 -3.2606 0.6334 17 6 2.1128 -5.0575 3.3532 18 6 3.4647 -5.6578 3.0651 19 6 4.6136 -4.9761 3.4206 20 6 5.8538 -5.5269 3.1569 21 6 5.9450 -6.7598 2.5381 22 6 4.7962 -7.4391 2.1779 23 6 3.5561 -6.8901 2.4456 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6055 -0.2619 2.1369 32 1 3.1264 -0.6445 1.2949 33 1 0.5077 -4.1022 -1.9341 34 1 1.3826 -5.8553 3.4889 35 1 2.1680 -4.4571 4.2613 36 1 4.5423 -4.0131 3.9044 37 1 6.7513 -4.9942 3.4342 38 1 6.9138 -7.1903 2.3324 39 1 4.8676 -8.4002 1.6905 40 1 2.6585 -7.4228 2.1682 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193830682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:26 Heat of formation + Delta-G solvation = -53.293370 kcal Electronic energy + Delta-G solvation = -22514.060411 eV Core-core repulsion = 19294.131096 eV Total energy + Delta-G solvation = -3219.929316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.70117 -38.59138 -36.59505 -34.87485 -34.27370 -32.25605 -30.76364 -30.39584 -26.87704 -26.60235 -25.69555 -24.07959 -22.04735 -21.32165 -19.94608 -19.75998 -18.35611 -16.55267 -16.20999 -16.08850 -15.20904 -14.80691 -14.56156 -14.42865 -14.35681 -13.78579 -13.27807 -13.03260 -12.91044 -12.71289 -12.41350 -12.13385 -12.02590 -11.98228 -11.80271 -11.18675 -10.98627 -10.85355 -10.73419 -10.70239 -10.58730 -10.43212 -10.22430 -9.95735 -9.47127 -9.41051 -8.90537 -8.42645 -8.29761 -7.80519 -6.40862 -4.00572 1.78788 1.89942 3.07050 3.32745 3.42236 3.64021 3.98247 4.29277 4.38818 4.99029 5.10155 5.16663 5.26410 5.33548 5.34273 5.46302 5.63648 5.66549 5.76497 5.83327 5.86349 5.92831 6.01720 6.04062 6.09272 6.14628 6.22813 6.31922 6.34914 6.48976 6.56284 6.59336 6.79774 6.93342 6.94081 7.18960 7.35456 7.49125 7.62408 7.81013 8.50043 8.99137 9.32923 9.80739 10.68476 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.006854 C = 0.006275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.851082 B = 4084.077531 C = 4461.428130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.142 4.142 4 C 0.085 3.915 5 O -0.340 6.340 6 C 0.626 3.374 7 O -0.623 6.623 8 N -0.447 5.447 9 C -0.357 4.357 10 H 0.102 0.898 11 C 0.098 3.902 12 N -0.845 5.845 13 Si 0.886 3.114 14 H -0.293 1.293 15 H -0.284 1.284 16 H -0.270 1.270 17 C 0.163 3.837 18 C -0.092 4.092 19 C -0.101 4.101 20 C -0.133 4.133 21 C -0.130 4.130 22 C -0.131 4.131 23 C -0.095 4.095 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.273 0.727 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.133 2.181 3.406 6.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.199 4.199 4 C 0.009 3.991 5 O -0.254 6.254 6 C 0.383 3.617 7 O -0.518 6.518 8 N -0.174 5.174 9 C -0.483 4.483 10 H 0.119 0.881 11 C -0.112 4.112 12 N -0.479 5.479 13 Si 0.715 3.285 14 H -0.222 1.222 15 H -0.210 1.210 16 H -0.196 1.196 17 C 0.041 3.959 18 C -0.093 4.093 19 C -0.119 4.119 20 C -0.151 4.151 21 C -0.148 4.148 22 C -0.149 4.149 23 C -0.114 4.114 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.144 0.856 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.171 2.402 3.448 6.663 hybrid contribution 1.103 0.298 -0.577 1.280 sum 6.273 2.701 2.871 7.409 Atomic orbital electron populations 1.21784 0.94088 1.03543 1.00678 1.21160 0.97412 0.95241 0.97962 1.21756 1.00890 0.95256 1.01998 1.22806 0.99069 0.79160 0.98065 1.86436 1.74986 1.20335 1.43665 1.17818 0.80035 0.82784 0.81085 1.90781 1.47788 1.74671 1.38579 1.42689 1.51287 1.02330 1.21143 1.18878 1.15664 1.29701 0.84032 0.88064 1.25201 0.96894 0.93723 0.95376 1.69872 1.31242 1.42747 1.04040 0.86484 0.85910 0.77680 0.78423 1.22165 1.21022 1.19551 1.20418 0.91493 0.93833 0.90196 1.20463 0.96201 0.94412 0.98243 1.21247 0.91974 0.99464 0.99244 1.21066 0.97373 0.96058 1.00604 1.21032 0.98011 0.95692 1.00094 1.21079 0.92776 1.00092 1.00955 1.21127 0.97640 0.95432 0.97151 0.93159 0.93138 0.90636 0.90479 0.92733 0.92079 0.92454 0.91963 0.92626 0.91735 0.89838 0.90294 0.85627 0.86796 0.86875 0.86568 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.09 37.16 0.34 -2.04 16 2 C -0.10 -1.69 3.16 -90.62 -0.29 -1.98 16 3 C -0.14 -1.85 9.19 37.16 0.34 -1.51 16 4 C 0.08 1.70 4.85 37.16 0.18 1.88 16 5 O -0.34 -8.34 5.08 -40.40 -0.21 -8.54 16 6 C 0.63 15.92 5.96 54.06 0.32 16.24 16 7 O -0.62 -15.96 15.11 -19.28 -0.29 -16.25 16 8 N -0.45 -11.01 2.17 -121.52 -0.26 -11.27 16 9 C -0.36 -9.50 9.67 -14.91 -0.14 -9.65 16 10 H 0.10 2.76 8.06 -52.49 -0.42 2.34 16 11 C 0.10 2.67 4.49 -17.47 -0.08 2.59 16 12 N -0.85 -23.67 13.96 55.49 0.77 -22.90 16 13 Si 0.89 22.91 25.58 -169.99 -4.35 18.56 16 14 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 15 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.27 -7.27 5.65 56.52 0.32 -6.95 16 17 C 0.16 3.35 5.51 -5.20 -0.03 3.32 16 18 C -0.09 -1.82 5.46 -104.63 -0.57 -2.39 16 19 C -0.10 -1.95 9.71 -39.58 -0.38 -2.33 16 20 C -0.13 -2.25 10.05 -39.58 -0.40 -2.64 16 21 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 22 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 23 C -0.09 -1.74 9.69 -39.58 -0.38 -2.12 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.50 7.82 -51.93 -0.41 1.09 16 27 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 28 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.08 1.54 7.97 -51.93 -0.41 1.12 16 35 H 0.08 1.57 7.37 -51.93 -0.38 1.19 16 36 H 0.13 2.51 7.45 -52.48 -0.39 2.12 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 333.03 15.07 5.02 5.02 Total: -1.00 -30.68 333.03 -7.51 -38.20 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.31 Total: 2.83 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.89 Total: -5.63 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.51 Total: -34.17 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.50 Total: -24.80 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.35 Total: 18.56 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.68 -7.51 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193830682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.098 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds