Wall clock time and date at job start Mon Mar 30 2020 02:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47042 * 2 1 4 4 C 1.52997 * 109.47696 * 120.00779 * 2 1 3 5 5 O 1.45201 * 109.46883 * 64.99170 * 4 2 1 6 6 C 1.34666 * 116.99779 * 180.02562 * 5 4 2 7 7 O 1.21511 * 119.99775 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00277 * 180.02562 * 6 5 4 9 9 C 1.37189 * 119.99585 * 0.02562 * 8 6 5 10 10 H 1.08002 * 119.99739 * 219.34379 * 9 8 6 11 11 C 1.38889 * 120.00255 * 39.34672 * 9 8 6 12 12 N 1.31466 * 119.99922 * 208.49502 * 11 9 8 13 13 Si 1.86794 * 119.99873 * 28.49663 * 11 9 8 14 14 H 1.48497 * 109.47173 * 95.26786 * 13 11 9 15 15 H 1.48498 * 109.47043 * 215.26750 * 13 11 9 16 16 H 1.48496 * 109.47241 * 335.27116 * 13 11 9 17 17 C 1.46494 * 120.00151 * 180.02562 * 8 6 5 18 18 C 1.50697 * 109.47318 * 269.78660 * 17 8 6 19 19 C 1.38236 * 119.99926 * 88.27938 * 18 17 8 20 20 C 1.38238 * 120.00306 * 179.97438 * 19 18 17 21 21 C 1.38244 * 119.99682 * 359.97438 * 20 19 18 22 22 C 1.38238 * 119.99961 * 0.27902 * 21 20 19 23 23 C 1.38233 * 119.99582 * 359.51044 * 22 21 20 24 24 H 1.09005 * 109.46744 * 299.99605 * 1 2 3 25 25 H 1.08998 * 109.47267 * 59.99069 * 1 2 3 26 26 H 1.08998 * 109.47036 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46687 * 240.00943 * 2 1 3 28 28 H 1.09008 * 109.46933 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47788 * 300.00021 * 3 2 1 30 30 H 1.08997 * 109.47126 * 60.00830 * 3 2 1 31 31 H 1.09002 * 109.46651 * 305.00063 * 4 2 1 32 32 H 1.08998 * 109.47358 * 184.99903 * 4 2 1 33 33 H 0.97003 * 119.99824 * 179.97438 * 12 11 9 34 34 H 1.08998 * 109.47415 * 149.78794 * 17 8 6 35 35 H 1.09006 * 109.47521 * 29.78692 * 17 8 6 36 36 H 1.08005 * 120.00102 * 359.97438 * 19 18 17 37 37 H 1.07992 * 120.00536 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.00076 * 180.02562 * 21 20 19 39 39 H 1.07996 * 119.99963 * 179.72568 * 22 21 20 40 40 H 1.08000 * 119.99812 * 180.27445 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 8 1.6559 -2.1204 1.1908 6 6 2.0302 -2.9007 2.2226 7 8 2.6603 -2.4253 3.1464 8 7 1.7061 -4.2089 2.2305 9 6 0.9951 -4.7456 1.1872 10 1 0.2238 -5.4769 1.3790 11 6 1.2673 -4.3488 -0.1157 12 7 0.3177 -4.3798 -1.0242 13 14 2.9828 -3.7710 -0.5769 14 1 3.7517 -4.9074 -1.1449 15 1 2.8850 -2.6860 -1.5860 16 1 3.6753 -3.2606 0.6334 17 6 2.1128 -5.0575 3.3532 18 6 3.4647 -5.6578 3.0651 19 6 4.6136 -4.9761 3.4206 20 6 5.8538 -5.5269 3.1569 21 6 5.9450 -6.7598 2.5381 22 6 4.7962 -7.4391 2.1779 23 6 3.5561 -6.8901 2.4456 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6055 -0.2619 2.1369 32 1 3.1264 -0.6445 1.2949 33 1 0.5077 -4.1022 -1.9341 34 1 1.3826 -5.8553 3.4889 35 1 2.1680 -4.4571 4.2613 36 1 4.5423 -4.0131 3.9044 37 1 6.7513 -4.9942 3.4342 38 1 6.9138 -7.1903 2.3324 39 1 4.8676 -8.4002 1.6905 40 1 2.6585 -7.4228 2.1682 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193830682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:25 Heat of formation + Delta-G solvation = -69.256864 kcal Electronic energy + Delta-G solvation = -22514.752640 eV Core-core repulsion = 19294.131096 eV Total energy + Delta-G solvation = -3220.621545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.54282 -40.03615 -38.24172 -36.72002 -35.89037 -34.20926 -32.37442 -31.74301 -28.17678 -28.06712 -27.42285 -25.92085 -23.42029 -22.90017 -21.52536 -21.32162 -20.28209 -18.35158 -17.96475 -17.70232 -16.98205 -16.43292 -16.22773 -15.94302 -15.91080 -15.31165 -14.95439 -14.74111 -14.45843 -14.24109 -13.95001 -13.62722 -13.52372 -13.40558 -13.04889 -12.95533 -12.84697 -12.58775 -12.30768 -12.10619 -12.04423 -11.86579 -11.80985 -11.69541 -11.41029 -11.26630 -10.93557 -9.84609 -9.78200 -9.64757 -8.53607 -6.11179 0.39973 0.53577 1.08243 1.23994 1.34644 1.80916 2.00249 2.29155 2.85899 3.00900 3.53116 3.78151 3.86426 3.96666 3.99884 4.13921 4.18771 4.32057 4.33940 4.42146 4.47569 4.60787 4.62413 4.76272 4.78574 4.79508 4.93156 4.95320 5.12591 5.13003 5.19831 5.26442 5.41992 5.45116 5.59421 5.60989 5.68701 5.78878 5.81134 6.15829 6.41230 6.94398 7.28872 7.84611 8.59619 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.006854 C = 0.006275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.851082 B = 4084.077531 C = 4461.428130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 C -0.134 4.134 4 C 0.076 3.924 5 O -0.359 6.359 6 C 0.617 3.383 7 O -0.633 6.633 8 N -0.453 5.453 9 C -0.355 4.355 10 H 0.089 0.911 11 C 0.075 3.925 12 N -0.872 5.872 13 Si 0.927 3.073 14 H -0.295 1.295 15 H -0.278 1.278 16 H -0.288 1.288 17 C 0.161 3.839 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.136 4.136 21 C -0.123 4.123 22 C -0.132 4.132 23 C -0.109 4.109 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.033 0.967 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.277 0.723 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.140 0.860 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.661 2.415 3.082 7.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.116 4.116 3 C -0.191 4.191 4 C 0.001 3.999 5 O -0.273 6.273 6 C 0.373 3.627 7 O -0.529 6.529 8 N -0.181 5.181 9 C -0.481 4.481 10 H 0.106 0.894 11 C -0.133 4.133 12 N -0.507 5.507 13 Si 0.756 3.244 14 H -0.224 1.224 15 H -0.203 1.203 16 H -0.214 1.214 17 C 0.040 3.960 18 C -0.115 4.115 19 C -0.140 4.140 20 C -0.154 4.154 21 C -0.141 4.141 22 C -0.150 4.150 23 C -0.128 4.128 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.157 0.843 38 H 0.170 0.830 39 H 0.165 0.835 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.702 2.635 3.126 7.851 hybrid contribution 0.649 0.212 -0.395 0.789 sum 7.351 2.848 2.731 8.343 Atomic orbital electron populations 1.21726 0.93720 1.01405 1.02692 1.21238 0.97732 0.97232 0.95365 1.21731 1.01267 0.92274 1.03825 1.23189 0.99115 0.77402 1.00176 1.86400 1.74997 1.22325 1.43578 1.18099 0.80152 0.83177 0.81222 1.90751 1.48283 1.74895 1.38980 1.42804 1.51357 1.02550 1.21378 1.18792 1.15873 1.28869 0.84529 0.89368 1.25485 0.98170 0.94060 0.95542 1.69902 1.32087 1.44203 1.04549 0.85893 0.83759 0.77284 0.77427 1.22366 1.20323 1.21417 1.20540 0.92987 0.93744 0.88686 1.20394 0.95571 0.95509 0.99987 1.21262 0.93175 0.99209 1.00393 1.21407 0.97230 0.96733 1.00036 1.21497 0.99571 0.94849 0.98223 1.21492 0.92090 1.01220 1.00175 1.21298 0.98984 0.95151 0.97374 0.91565 0.90720 0.94751 0.92554 0.92186 0.89898 0.90976 0.91120 0.93025 0.91321 0.88257 0.90325 0.87326 0.84265 0.83043 0.83510 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 9.09 71.98 0.65 -3.79 16 2 C -0.10 -3.22 3.16 -10.79 -0.03 -3.25 16 3 C -0.13 -3.14 9.19 71.98 0.66 -2.47 16 4 C 0.08 3.05 4.85 71.98 0.35 3.40 16 5 O -0.36 -17.85 5.08 -55.76 -0.28 -18.13 16 6 C 0.62 31.89 5.96 129.79 0.77 32.66 16 7 O -0.63 -32.96 15.11 19.80 0.30 -32.66 16 8 N -0.45 -22.69 2.17 -768.77 -1.67 -24.36 16 9 C -0.35 -19.18 9.67 84.01 0.81 -18.37 16 10 H 0.09 4.93 8.06 -2.91 -0.02 4.91 16 11 C 0.07 4.13 4.49 84.90 0.38 4.51 16 12 N -0.87 -49.40 13.96 21.66 0.30 -49.10 16 13 Si 0.93 47.59 25.58 68.60 1.75 49.34 16 14 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 15 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 16 H -0.29 -15.56 5.65 99.48 0.56 -15.00 16 17 C 0.16 6.76 5.51 85.63 0.47 7.23 16 18 C -0.11 -4.49 5.46 -19.87 -0.11 -4.60 16 19 C -0.12 -4.67 9.71 22.27 0.22 -4.45 16 20 C -0.14 -4.31 10.05 22.27 0.22 -4.09 16 21 C -0.12 -3.48 10.05 22.27 0.22 -3.25 16 22 C -0.13 -3.97 10.05 22.27 0.22 -3.74 16 23 C -0.11 -3.91 9.69 22.27 0.22 -3.69 16 24 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 25 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 26 H 0.03 1.37 7.82 -2.39 -0.02 1.35 16 27 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.10 3.71 7.97 -2.39 -0.02 3.69 16 35 H 0.08 3.22 7.37 -2.38 -0.02 3.20 16 36 H 0.11 4.44 7.45 -2.91 -0.02 4.42 16 37 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 38 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 40 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -66.50 333.03 6.33 -60.17 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.86 Total: 18.64 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 5.07 Total: -3.92 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -1.36 Total: -73.45 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: 0.02 Total: -50.79 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.75 Total: 49.34 kcal Total: -66.50 6.33 -60.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193830682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.084 kcal (2) G-P(sol) polarization free energy of solvation -66.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds