Wall clock time and date at job start Mon Mar 30 2020 01:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47131 * 2 1 4 4 C 1.53003 * 109.47338 * 240.00604 * 2 1 3 5 5 C 1.52991 * 109.47604 * 120.00303 * 2 1 3 6 6 O 1.45202 * 109.47046 * 60.00122 * 5 2 1 7 7 C 1.34651 * 117.00029 * 180.02562 * 6 5 2 8 8 O 1.21511 * 119.99943 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00095 * 179.97438 * 7 6 5 10 10 C 1.39961 * 120.00386 * 174.28321 * 9 7 6 11 11 C 1.39293 * 119.94845 * 145.42586 * 10 9 7 12 12 C 1.38490 * 120.42868 * 180.02562 * 11 10 9 13 13 C 1.37689 * 120.32151 * 0.27306 * 12 11 10 14 14 C 1.40745 * 119.88119 * 359.43960 * 13 12 11 15 15 C 1.41407 * 120.20852 * 180.31461 * 14 13 12 16 16 H 1.08000 * 119.99948 * 214.43592 * 15 14 13 17 17 C 1.39935 * 120.00064 * 34.43948 * 15 14 13 18 18 N 1.30830 * 119.99725 * 5.53497 * 17 15 14 19 19 Si 1.86799 * 120.00169 * 185.53892 * 17 15 14 20 20 H 1.48505 * 109.46825 * 59.99613 * 19 17 15 21 21 H 1.48497 * 109.47020 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47080 * 299.99988 * 19 17 15 23 23 C 1.38231 * 119.94614 * 325.41091 * 10 9 7 24 24 H 1.08996 * 109.46723 * 299.99536 * 1 2 3 25 25 H 1.08992 * 109.47249 * 59.99553 * 1 2 3 26 26 H 1.08993 * 109.46729 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47379 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47057 * 300.00420 * 3 2 1 29 29 H 1.09005 * 109.46831 * 60.00370 * 3 2 1 30 30 H 1.09006 * 109.46720 * 299.99663 * 4 2 1 31 31 H 1.08999 * 109.47197 * 59.99367 * 4 2 1 32 32 H 1.08995 * 109.47249 * 179.97438 * 4 2 1 33 33 H 1.09005 * 109.47081 * 300.00073 * 5 2 1 34 34 H 1.09009 * 109.47545 * 180.02562 * 5 2 1 35 35 H 0.97007 * 119.99956 * 354.29374 * 9 7 6 36 36 H 1.07996 * 119.78229 * 0.02890 * 11 10 9 37 37 H 1.07992 * 119.83716 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.05697 * 179.70160 * 13 12 11 39 39 H 0.97000 * 119.99972 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.16160 * 359.96974 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2491 6 8 1.5562 -2.0903 1.2490 7 6 1.9176 -2.8665 2.2882 8 8 2.6187 -2.4124 3.1708 9 7 1.5019 -4.1470 2.3495 10 6 1.9732 -4.9880 3.3641 11 6 1.1370 -5.9624 3.9041 12 6 1.5929 -6.7996 4.9087 13 6 2.8772 -6.6739 5.3889 14 6 3.7354 -5.6979 4.8487 15 6 5.0578 -5.5672 5.3321 16 1 5.5203 -4.5926 5.3830 17 6 5.7673 -6.7007 5.7445 18 7 5.2495 -7.8912 5.5825 19 14 7.4534 -6.5139 6.5264 20 1 7.3392 -5.6938 7.7592 21 1 7.9899 -7.8547 6.8723 22 1 8.3712 -5.8446 5.5699 23 6 3.2679 -4.8506 3.8285 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0276 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9564 0.8901 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2073 -2.1393 32 1 3.1300 -0.7207 -1.2495 33 1 1.6768 -0.2075 2.1392 34 1 3.1302 -0.7208 1.2493 35 1 0.8760 -4.4858 1.6903 36 1 0.1266 -6.0657 3.5369 37 1 0.9366 -7.5521 5.3202 38 1 3.2267 -7.3259 6.1758 39 1 5.7411 -8.6769 5.8687 40 1 3.9172 -4.0959 3.4100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194385219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:01 Heat of formation + Delta-G solvation = -79.163109 kcal Electronic energy + Delta-G solvation = -21108.671555 eV Core-core repulsion = 17887.620443 eV Total energy + Delta-G solvation = -3221.051112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.32688 -38.30299 -37.12301 -35.41036 -34.46251 -33.00814 -29.81814 -28.42851 -27.49342 -27.41298 -26.53897 -25.27141 -22.23931 -20.96147 -20.10824 -19.21856 -18.35532 -17.47590 -16.30885 -16.21438 -15.43167 -14.82498 -14.73102 -14.62257 -14.48949 -13.94296 -13.42787 -13.00618 -12.87323 -12.76552 -12.38167 -12.25227 -12.07945 -11.83128 -11.68713 -11.25484 -11.10707 -11.06821 -11.03920 -10.98572 -10.80692 -10.48412 -10.37436 -10.32246 -9.77840 -9.53399 -9.27260 -9.03421 -7.39534 -6.95425 -6.61841 -4.35743 2.41574 2.73187 2.87265 3.11605 3.15822 3.20679 3.48420 4.01149 4.37694 4.57295 4.59559 4.71464 4.88907 5.21956 5.30061 5.40320 5.45735 5.55717 5.60300 5.65419 5.69694 5.78920 5.84923 5.93589 6.16030 6.17606 6.20988 6.33963 6.48078 6.71385 6.99199 7.02659 7.07070 7.28118 7.52290 7.69586 7.91806 8.10264 8.11099 8.26457 8.65817 8.81420 8.96144 8.97764 10.32709 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024002 B = 0.003822 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.277968 B = 7325.102894 C = 8188.027181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.069 4.069 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.097 3.903 6 O -0.371 6.371 7 C 0.640 3.360 8 O -0.551 6.551 9 N -0.645 5.645 10 C 0.158 3.842 11 C -0.247 4.247 12 C -0.096 4.096 13 C -0.157 4.157 14 C 0.122 3.878 15 C -0.465 4.465 16 H 0.077 0.923 17 C 0.073 3.927 18 N -0.811 5.811 19 Si 0.913 3.087 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.267 1.267 23 C -0.201 4.201 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.405 0.595 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.279 0.721 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.801 10.726 -10.218 16.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.198 4.198 5 C 0.022 3.978 6 O -0.286 6.286 7 C 0.393 3.607 8 O -0.437 6.437 9 N -0.295 5.295 10 C 0.067 3.933 11 C -0.269 4.269 12 C -0.115 4.115 13 C -0.176 4.176 14 C 0.119 3.881 15 C -0.496 4.496 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.437 5.437 19 Si 0.738 3.262 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.223 4.223 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.239 0.761 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.367 10.812 -9.805 15.924 hybrid contribution 0.528 -0.141 0.022 0.547 sum -5.839 10.670 -9.783 15.610 Atomic orbital electron populations 1.21841 0.93740 1.02640 1.01545 1.20664 0.96784 0.95068 0.94388 1.21827 1.01431 0.94195 1.02362 1.21849 1.01009 1.00964 0.96007 1.22994 0.99171 0.77410 0.98230 1.86166 1.72168 1.25025 1.45261 1.18132 0.79654 0.82195 0.80725 1.91043 1.40229 1.73283 1.39192 1.42048 1.48258 1.07464 1.31756 1.17272 0.93273 0.92018 0.90701 1.20067 0.97988 1.03622 1.05187 1.20494 0.96252 0.97948 0.96762 1.21397 0.91974 1.02174 1.02085 1.17483 0.92751 0.89573 0.88274 1.19496 0.97947 0.94385 1.37732 0.90512 1.25841 1.00070 0.94728 0.93562 1.69765 1.38285 0.98690 1.37000 0.86297 0.81570 0.78117 0.80246 1.18955 1.20431 1.19124 1.21123 0.93656 1.05535 1.01976 0.92687 0.92583 0.91716 0.92176 0.91726 0.92229 0.91679 0.92598 0.92600 0.91285 0.91180 0.76090 0.88911 0.88687 0.86276 0.91050 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.33 37.16 0.31 -0.98 16 2 C -0.07 -0.67 0.86 -154.51 -0.13 -0.81 16 3 C -0.14 -1.12 8.47 37.16 0.31 -0.80 16 4 C -0.14 -1.34 8.33 37.16 0.31 -1.03 16 5 C 0.10 1.27 4.33 37.15 0.16 1.43 16 6 O -0.37 -5.74 8.93 -40.36 -0.36 -6.10 16 7 C 0.64 12.41 8.47 54.05 0.46 12.87 16 8 O -0.55 -12.73 13.92 -19.28 -0.27 -13.00 16 9 N -0.64 -12.20 5.34 -14.31 -0.08 -12.27 16 10 C 0.16 3.63 6.25 -83.76 -0.52 3.10 16 11 C -0.25 -5.42 9.97 -39.10 -0.39 -5.81 16 12 C -0.10 -2.21 10.02 -39.69 -0.40 -2.60 16 13 C -0.16 -4.09 8.62 -38.84 -0.33 -4.43 16 14 C 0.12 3.37 5.50 -106.85 -0.59 2.78 16 15 C -0.46 -12.87 9.04 -37.74 -0.34 -13.21 16 16 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 17 C 0.07 1.90 5.31 -17.34 -0.09 1.81 16 18 N -0.81 -21.38 10.97 55.55 0.61 -20.77 16 19 Si 0.91 19.42 29.56 -169.99 -5.03 14.39 16 20 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 23 C -0.20 -5.27 8.39 -38.69 -0.32 -5.60 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.66 7.68 -51.93 -0.40 0.26 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 35 H 0.40 6.12 8.93 -40.82 -0.36 5.76 16 36 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 38 H 0.12 3.20 6.48 -52.49 -0.34 2.86 16 39 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 40 H 0.11 2.90 6.51 -52.49 -0.34 2.56 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -30.13 334.73 -7.69 -37.81 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.04 Total: 8.16 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -1.57 Total: -13.27 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.53 Total: -33.05 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.63 Total: -19.10 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.13 -7.69 -37.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194385219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.349 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds