Wall clock time and date at job start Mon Mar 30 2020 01:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47131 * 2 1 4 4 C 1.53003 * 109.47338 * 240.00604 * 2 1 3 5 5 C 1.52991 * 109.47604 * 120.00303 * 2 1 3 6 6 O 1.45202 * 109.47046 * 60.00122 * 5 2 1 7 7 C 1.34651 * 117.00029 * 180.02562 * 6 5 2 8 8 O 1.21511 * 119.99943 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00095 * 179.97438 * 7 6 5 10 10 C 1.39961 * 120.00386 * 174.28321 * 9 7 6 11 11 C 1.39293 * 119.94845 * 145.42586 * 10 9 7 12 12 C 1.38490 * 120.42868 * 180.02562 * 11 10 9 13 13 C 1.37689 * 120.32151 * 0.27306 * 12 11 10 14 14 C 1.40745 * 119.88119 * 359.43960 * 13 12 11 15 15 C 1.41407 * 120.20852 * 180.31461 * 14 13 12 16 16 H 1.08000 * 119.99948 * 214.43592 * 15 14 13 17 17 C 1.39935 * 120.00064 * 34.43948 * 15 14 13 18 18 N 1.30830 * 119.99725 * 5.53497 * 17 15 14 19 19 Si 1.86799 * 120.00169 * 185.53892 * 17 15 14 20 20 H 1.48505 * 109.46825 * 59.99613 * 19 17 15 21 21 H 1.48497 * 109.47020 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47080 * 299.99988 * 19 17 15 23 23 C 1.38231 * 119.94614 * 325.41091 * 10 9 7 24 24 H 1.08996 * 109.46723 * 299.99536 * 1 2 3 25 25 H 1.08992 * 109.47249 * 59.99553 * 1 2 3 26 26 H 1.08993 * 109.46729 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47379 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47057 * 300.00420 * 3 2 1 29 29 H 1.09005 * 109.46831 * 60.00370 * 3 2 1 30 30 H 1.09006 * 109.46720 * 299.99663 * 4 2 1 31 31 H 1.08999 * 109.47197 * 59.99367 * 4 2 1 32 32 H 1.08995 * 109.47249 * 179.97438 * 4 2 1 33 33 H 1.09005 * 109.47081 * 300.00073 * 5 2 1 34 34 H 1.09009 * 109.47545 * 180.02562 * 5 2 1 35 35 H 0.97007 * 119.99956 * 354.29374 * 9 7 6 36 36 H 1.07996 * 119.78229 * 0.02890 * 11 10 9 37 37 H 1.07992 * 119.83716 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.05697 * 179.70160 * 13 12 11 39 39 H 0.97000 * 119.99972 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.16160 * 359.96974 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2491 6 8 1.5562 -2.0903 1.2490 7 6 1.9176 -2.8665 2.2882 8 8 2.6187 -2.4124 3.1708 9 7 1.5019 -4.1470 2.3495 10 6 1.9732 -4.9880 3.3641 11 6 1.1370 -5.9624 3.9041 12 6 1.5929 -6.7996 4.9087 13 6 2.8772 -6.6739 5.3889 14 6 3.7354 -5.6979 4.8487 15 6 5.0578 -5.5672 5.3321 16 1 5.5203 -4.5926 5.3830 17 6 5.7673 -6.7007 5.7445 18 7 5.2495 -7.8912 5.5825 19 14 7.4534 -6.5139 6.5264 20 1 7.3392 -5.6938 7.7592 21 1 7.9899 -7.8547 6.8723 22 1 8.3712 -5.8446 5.5699 23 6 3.2679 -4.8506 3.8285 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0276 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9564 0.8901 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2073 -2.1393 32 1 3.1300 -0.7207 -1.2495 33 1 1.6768 -0.2075 2.1392 34 1 3.1302 -0.7208 1.2493 35 1 0.8760 -4.4858 1.6903 36 1 0.1266 -6.0657 3.5369 37 1 0.9366 -7.5521 5.3202 38 1 3.2267 -7.3259 6.1758 39 1 5.7411 -8.6769 5.8687 40 1 3.9172 -4.0959 3.4100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194385219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:00 Heat of formation + Delta-G solvation = -96.506337 kcal Electronic energy + Delta-G solvation = -21109.423613 eV Core-core repulsion = 17887.620443 eV Total energy + Delta-G solvation = -3221.803170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.84884 -39.80863 -38.51596 -36.71408 -36.23829 -34.87096 -31.76227 -30.19710 -28.18429 -28.15222 -27.72985 -27.22092 -23.89886 -22.83911 -21.84010 -20.12001 -19.96787 -19.24774 -17.73644 -17.70758 -17.24865 -16.50852 -16.42404 -15.78697 -15.61693 -15.06263 -14.84516 -14.67809 -14.24961 -14.00487 -13.94686 -13.58750 -13.07846 -13.02509 -12.94776 -12.86325 -12.83549 -12.55219 -12.21472 -12.14624 -11.97018 -11.86945 -11.68888 -11.58579 -11.52938 -11.35262 -11.16733 -10.88087 -9.34995 -8.82343 -8.54811 -6.41385 0.76213 0.96568 1.14008 1.37115 1.48652 1.48985 1.81425 2.23053 2.77348 3.14849 3.65238 3.69197 3.73183 3.99959 4.30132 4.39459 4.43450 4.46490 4.58031 4.74137 4.81618 4.89226 4.90499 5.00527 5.03313 5.04767 5.08080 5.10631 5.12181 5.21539 5.31070 5.36721 5.42186 5.46008 5.69597 5.79487 6.02164 6.09494 6.31743 6.46041 6.66510 6.93190 6.97894 7.30465 8.40933 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024002 B = 0.003822 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.277968 B = 7325.102894 C = 8188.027181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C -0.139 4.139 4 C -0.141 4.141 5 C 0.088 3.912 6 O -0.355 6.355 7 C 0.642 3.358 8 O -0.592 6.592 9 N -0.633 5.633 10 C 0.163 3.837 11 C -0.232 4.232 12 C -0.092 4.092 13 C -0.180 4.180 14 C 0.092 3.908 15 C -0.509 4.509 16 H 0.062 0.938 17 C 0.035 3.965 18 N -0.836 5.836 19 Si 0.983 3.017 20 H -0.262 1.262 21 H -0.262 1.262 22 H -0.265 1.265 23 C -0.227 4.227 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.426 0.574 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.104 0.896 39 H 0.287 0.713 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.199 11.046 -11.392 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.064 4.064 3 C -0.196 4.196 4 C -0.198 4.198 5 C 0.014 3.986 6 O -0.268 6.268 7 C 0.396 3.604 8 O -0.482 6.482 9 N -0.286 5.286 10 C 0.071 3.929 11 C -0.253 4.253 12 C -0.110 4.110 13 C -0.200 4.200 14 C 0.089 3.911 15 C -0.540 4.540 16 H 0.081 0.919 17 C -0.177 4.177 18 N -0.464 5.464 19 Si 0.804 3.196 20 H -0.186 1.186 21 H -0.186 1.186 22 H -0.190 1.190 23 C -0.249 4.249 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.264 0.736 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.813 11.137 -11.032 17.515 hybrid contribution 0.819 -0.170 0.282 0.882 sum -6.994 10.967 -10.750 16.875 Atomic orbital electron populations 1.21841 0.92901 1.02240 1.02654 1.20726 0.97417 0.95690 0.92544 1.21837 1.01434 0.92801 1.03506 1.21857 1.00803 1.00445 0.96705 1.23373 0.98868 0.76169 1.00232 1.86209 1.71549 1.25938 1.43126 1.18263 0.78836 0.82474 0.80855 1.91028 1.41946 1.74189 1.41005 1.41821 1.48297 1.07048 1.31410 1.17327 0.92301 0.92339 0.90923 1.20515 0.99486 1.01702 1.03597 1.20883 0.95348 0.98392 0.96408 1.21366 0.93466 1.02395 1.02733 1.17793 0.93368 0.90773 0.89170 1.19675 0.99024 0.94677 1.40605 0.91948 1.26634 1.03799 0.93912 0.93403 1.69810 1.39917 0.99322 1.37315 0.85242 0.76467 0.78768 0.79097 1.18599 1.18580 1.18995 1.21067 0.95260 1.05630 1.02923 0.92625 0.90483 0.92855 0.92285 0.89691 0.91975 0.92968 0.90408 0.93003 0.91644 0.92211 0.73567 0.84418 0.85189 0.87754 0.90236 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.33 71.98 0.60 -1.64 16 2 C -0.06 -1.14 0.86 -52.18 -0.04 -1.19 16 3 C -0.14 -1.91 8.47 71.98 0.61 -1.30 16 4 C -0.14 -2.43 8.33 71.98 0.60 -1.83 16 5 C 0.09 2.28 4.33 71.98 0.31 2.60 16 6 O -0.35 -10.77 8.93 -55.61 -0.50 -11.26 16 7 C 0.64 24.89 8.47 129.79 1.10 25.99 16 8 O -0.59 -28.21 13.92 19.81 0.28 -27.94 16 9 N -0.63 -23.22 5.34 -429.61 -2.30 -25.52 16 10 C 0.16 7.39 6.25 38.10 0.24 7.63 16 11 C -0.23 -9.56 9.97 22.58 0.23 -9.33 16 12 C -0.09 -4.08 10.02 22.20 0.22 -3.86 16 13 C -0.18 -9.58 8.62 22.75 0.20 -9.38 16 14 C 0.09 5.27 5.50 -21.31 -0.12 5.15 16 15 C -0.51 -29.70 9.04 23.46 0.21 -29.49 16 16 H 0.06 3.65 7.85 -2.91 -0.02 3.62 16 17 C 0.04 1.88 5.31 85.25 0.45 2.34 16 18 N -0.84 -45.09 10.97 21.82 0.24 -44.85 16 19 Si 0.98 40.62 29.56 68.60 2.03 42.64 16 20 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 21 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 23 C -0.23 -12.33 8.39 22.85 0.19 -12.14 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.98 7.68 -2.39 -0.02 0.96 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.05 1.03 7.68 -2.38 -0.02 1.01 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.43 11.83 8.93 -92.70 -0.83 11.00 16 36 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.13 4.83 8.06 -2.91 -0.02 4.80 16 38 H 0.10 5.78 6.48 -2.91 -0.02 5.76 16 39 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 40 H 0.08 4.88 6.51 -2.91 -0.02 4.86 16 Total: -1.00 -68.17 334.73 4.75 -63.41 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.20 Total: 29.96 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 4.80 Total: -26.45 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -2.06 Total: -70.37 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.22 Total: -39.20 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.64 kcal Total: -68.17 4.75 -63.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194385219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.093 kcal (2) G-P(sol) polarization free energy of solvation -68.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds