Wall clock time and date at job start Mon Mar 30 2020 01:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47279 * 2 1 4 4 C 1.53004 * 109.47122 * 240.00246 * 2 1 3 5 5 C 1.52995 * 109.47255 * 119.99959 * 2 1 3 6 6 O 1.45203 * 109.46926 * 60.00093 * 5 2 1 7 7 C 1.34647 * 116.99786 * 179.97438 * 6 5 2 8 8 O 1.21502 * 120.00259 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99804 * 180.27297 * 7 6 5 10 10 C 1.39145 * 119.99892 * 174.99666 * 9 7 6 11 11 C 1.38643 * 120.28777 * 34.23241 * 10 9 7 12 12 C 1.38216 * 120.03337 * 179.97438 * 11 10 9 13 13 C 1.38862 * 120.62083 * 359.97438 * 12 11 10 14 14 C 1.36463 * 120.57389 * 0.02562 * 13 12 11 15 15 C 1.40732 * 119.94461 * 359.72519 * 14 13 12 16 16 C 1.41069 * 120.30508 * 180.27542 * 15 14 13 17 17 H 1.07997 * 120.00438 * 148.79454 * 16 15 14 18 18 C 1.39958 * 119.99940 * 328.79922 * 16 15 14 19 19 N 1.30859 * 119.99919 * 167.55686 * 18 16 15 20 20 Si 1.86798 * 119.99744 * 347.55395 * 18 16 15 21 21 H 1.48494 * 109.47181 * 92.51124 * 20 18 16 22 22 H 1.48506 * 109.46938 * 212.50549 * 20 18 16 23 23 H 1.48497 * 109.47487 * 332.50648 * 20 18 16 24 24 H 1.09000 * 109.47040 * 300.00025 * 1 2 3 25 25 H 1.09003 * 109.47012 * 59.99873 * 1 2 3 26 26 H 1.09001 * 109.46792 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47539 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47212 * 300.00563 * 3 2 1 29 29 H 1.09000 * 109.47105 * 60.00014 * 3 2 1 30 30 H 1.09001 * 109.46777 * 299.99895 * 4 2 1 31 31 H 1.09003 * 109.47275 * 60.00042 * 4 2 1 32 32 H 1.09006 * 109.46840 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47599 * 300.00174 * 5 2 1 34 34 H 1.09000 * 109.47317 * 179.97438 * 5 2 1 35 35 H 0.96995 * 120.00366 * 355.00142 * 9 7 6 36 36 H 1.08003 * 119.97645 * 359.97438 * 11 10 9 37 37 H 1.08007 * 119.69009 * 179.97438 * 12 11 10 38 38 H 1.07993 * 119.71712 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.02926 * 179.97438 * 14 13 12 40 40 H 0.96998 * 119.99652 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 8 1.5560 -2.0902 1.2492 7 6 1.9183 -2.8666 2.2879 8 8 2.6192 -2.4126 3.1704 9 7 1.5075 -4.1489 2.3461 10 6 1.9656 -4.9807 3.3632 11 6 2.2117 -4.4686 4.6278 12 6 2.6662 -5.2997 5.6343 13 6 2.8805 -6.6504 5.3936 14 6 2.6465 -7.1809 4.1583 15 6 2.1784 -6.3575 3.1173 16 6 1.9284 -6.8992 1.8389 17 1 1.1504 -6.4806 1.2178 18 6 2.6886 -7.9791 1.3756 19 7 2.3092 -8.6369 0.3099 20 14 4.2448 -8.4814 2.2786 21 1 3.9200 -9.5290 3.2796 22 1 5.2312 -9.0155 1.3054 23 1 4.8204 -7.2990 2.9684 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2073 -2.1393 32 1 3.1301 -0.7216 -1.2490 33 1 1.6767 -0.2075 2.1392 34 1 3.1300 -0.7216 1.2490 35 1 0.8925 -4.4920 1.6791 36 1 2.0481 -3.4196 4.8265 37 1 2.8565 -4.8947 6.6174 38 1 3.2355 -7.2865 6.1908 39 1 2.8165 -8.2325 3.9806 40 1 2.8362 -9.3851 -0.0114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194385684.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:04 Heat of formation + Delta-G solvation = -75.964612 kcal Electronic energy + Delta-G solvation = -21567.404788 eV Core-core repulsion = 18346.492374 eV Total energy + Delta-G solvation = -3220.912414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.24346 -38.43467 -37.22090 -35.30582 -34.01506 -33.63465 -30.48547 -28.83341 -27.41539 -27.30414 -26.59858 -25.07552 -22.44498 -21.20956 -19.98079 -19.12486 -18.19083 -17.47325 -16.76397 -16.18694 -15.94668 -14.94648 -14.69639 -14.49562 -14.05356 -13.86574 -13.68336 -13.25315 -13.01564 -12.66592 -12.52142 -12.31534 -12.12405 -11.99678 -11.73505 -11.70984 -11.17173 -10.98944 -10.97096 -10.90276 -10.71787 -10.50397 -10.24489 -10.08071 -9.90116 -9.73331 -9.42714 -9.02616 -7.67402 -7.19844 -6.98581 -4.53005 2.37312 2.62442 2.71288 3.08313 3.17587 3.31098 3.49371 3.95192 4.49428 4.51989 4.65827 4.71182 5.02851 5.29104 5.32364 5.36973 5.47797 5.52839 5.65167 5.68958 5.77257 5.90284 5.92988 6.02222 6.04466 6.10044 6.25915 6.29181 6.33072 6.58759 6.65985 6.71381 6.96214 7.14405 7.34304 7.44631 7.66493 7.78352 7.93866 8.18806 8.23735 8.54337 8.69216 8.99593 10.03446 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.004929 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.585214 B = 5679.707612 C = 6570.273403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.140 4.140 4 C -0.142 4.142 5 C 0.098 3.902 6 O -0.368 6.368 7 C 0.638 3.362 8 O -0.573 6.573 9 N -0.617 5.617 10 C 0.040 3.960 11 C -0.076 4.076 12 C -0.227 4.227 13 C -0.085 4.085 14 C -0.226 4.226 15 C 0.088 3.912 16 C -0.449 4.449 17 H 0.090 0.910 18 C 0.085 3.915 19 N -0.811 5.811 20 Si 0.913 3.087 21 H -0.270 1.270 22 H -0.293 1.293 23 H -0.243 1.243 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.411 0.589 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 12.367 -1.756 12.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 C -0.197 4.197 4 C -0.199 4.199 5 C 0.023 3.977 6 O -0.283 6.283 7 C 0.392 3.608 8 O -0.462 6.462 9 N -0.266 5.266 10 C -0.053 4.053 11 C -0.096 4.096 12 C -0.247 4.247 13 C -0.104 4.104 14 C -0.245 4.245 15 C 0.083 3.917 16 C -0.477 4.477 17 H 0.108 0.892 18 C -0.134 4.134 19 N -0.435 5.435 20 Si 0.740 3.260 21 H -0.196 1.196 22 H -0.221 1.221 23 H -0.166 1.166 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.247 0.753 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.083 12.499 -1.644 12.653 hybrid contribution 0.491 -0.523 -0.023 0.718 sum -0.592 11.976 -1.667 12.106 Atomic orbital electron populations 1.21846 0.93735 1.02790 1.01425 1.20658 0.96803 0.94946 0.94505 1.21821 1.01323 0.94317 1.02272 1.21855 1.00932 1.01212 0.95907 1.22948 0.98995 0.77672 0.98062 1.86196 1.72059 1.24785 1.45231 1.18138 0.79180 0.82653 0.80838 1.90923 1.41743 1.73702 1.39868 1.41434 1.47478 1.06856 1.30808 1.17355 1.12204 0.88891 0.86839 1.20835 0.98515 0.99239 0.91005 1.20317 1.12272 0.93785 0.98302 1.20394 0.98911 0.94907 0.96146 1.20630 1.12034 0.98421 0.93459 1.17504 0.91064 0.89410 0.93691 1.19219 1.16964 1.11961 0.99596 0.89240 1.26081 0.99264 0.93535 0.94486 1.69652 1.37024 1.15859 1.21007 0.86301 0.80652 0.80477 0.78538 1.19597 1.22050 1.16605 0.92781 0.92617 0.91553 0.92275 0.91762 0.92335 0.91428 0.92633 0.92681 0.91491 0.91392 0.75255 0.86450 0.88416 0.88661 0.87736 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.33 37.16 0.31 -1.13 16 2 C -0.07 -0.74 0.86 -154.51 -0.13 -0.87 16 3 C -0.14 -1.19 8.47 37.16 0.31 -0.88 16 4 C -0.14 -1.55 8.33 37.16 0.31 -1.24 16 5 C 0.10 1.36 4.33 37.15 0.16 1.52 16 6 O -0.37 -6.23 8.93 -40.34 -0.36 -6.59 16 7 C 0.64 12.98 8.59 54.06 0.46 13.44 16 8 O -0.57 -12.88 13.51 -19.27 -0.26 -13.14 16 9 N -0.62 -13.01 5.04 -13.87 -0.07 -13.08 16 10 C 0.04 0.94 6.35 -83.16 -0.53 0.41 16 11 C -0.08 -1.73 8.69 -39.44 -0.34 -2.07 16 12 C -0.23 -4.89 10.04 -39.36 -0.39 -5.28 16 13 C -0.08 -1.84 9.97 -39.99 -0.40 -2.24 16 14 C -0.23 -5.37 6.95 -39.28 -0.27 -5.64 16 15 C 0.09 2.18 5.14 -106.65 -0.55 1.63 16 16 C -0.45 -11.57 9.13 -37.86 -0.35 -11.91 16 17 H 0.09 2.33 7.08 -52.49 -0.37 1.96 16 18 C 0.08 2.17 5.47 -17.32 -0.09 2.08 16 19 N -0.81 -21.05 13.93 55.55 0.77 -20.28 16 20 Si 0.91 20.74 24.40 -169.99 -4.15 16.60 16 21 H -0.27 -5.88 6.66 56.52 0.38 -5.51 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.24 -5.77 6.69 56.52 0.38 -5.39 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.41 8.02 7.68 -40.82 -0.31 7.71 16 36 H 0.12 2.65 6.15 -52.48 -0.32 2.32 16 37 H 0.10 1.85 8.06 -52.48 -0.42 1.42 16 38 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.11 2.45 4.42 -52.48 -0.23 2.22 16 40 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16 LS Contribution 325.28 15.07 4.90 4.90 Total: -1.00 -28.33 325.28 -6.53 -34.87 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.87 Total: 8.92 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -1.50 Total: -12.20 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.70 Total: -33.36 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.62 Total: -19.73 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.15 Total: 16.60 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.33 -6.53 -34.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194385684.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.099 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds