Wall clock time and date at job start Mon Mar 30 2020 01:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47279 * 2 1 4 4 C 1.53004 * 109.47122 * 240.00246 * 2 1 3 5 5 C 1.52995 * 109.47255 * 119.99959 * 2 1 3 6 6 O 1.45203 * 109.46926 * 60.00093 * 5 2 1 7 7 C 1.34647 * 116.99786 * 179.97438 * 6 5 2 8 8 O 1.21502 * 120.00259 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99804 * 180.27297 * 7 6 5 10 10 C 1.39145 * 119.99892 * 174.99666 * 9 7 6 11 11 C 1.38643 * 120.28777 * 34.23241 * 10 9 7 12 12 C 1.38216 * 120.03337 * 179.97438 * 11 10 9 13 13 C 1.38862 * 120.62083 * 359.97438 * 12 11 10 14 14 C 1.36463 * 120.57389 * 0.02562 * 13 12 11 15 15 C 1.40732 * 119.94461 * 359.72519 * 14 13 12 16 16 C 1.41069 * 120.30508 * 180.27542 * 15 14 13 17 17 H 1.07997 * 120.00438 * 148.79454 * 16 15 14 18 18 C 1.39958 * 119.99940 * 328.79922 * 16 15 14 19 19 N 1.30859 * 119.99919 * 167.55686 * 18 16 15 20 20 Si 1.86798 * 119.99744 * 347.55395 * 18 16 15 21 21 H 1.48494 * 109.47181 * 92.51124 * 20 18 16 22 22 H 1.48506 * 109.46938 * 212.50549 * 20 18 16 23 23 H 1.48497 * 109.47487 * 332.50648 * 20 18 16 24 24 H 1.09000 * 109.47040 * 300.00025 * 1 2 3 25 25 H 1.09003 * 109.47012 * 59.99873 * 1 2 3 26 26 H 1.09001 * 109.46792 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47539 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47212 * 300.00563 * 3 2 1 29 29 H 1.09000 * 109.47105 * 60.00014 * 3 2 1 30 30 H 1.09001 * 109.46777 * 299.99895 * 4 2 1 31 31 H 1.09003 * 109.47275 * 60.00042 * 4 2 1 32 32 H 1.09006 * 109.46840 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47599 * 300.00174 * 5 2 1 34 34 H 1.09000 * 109.47317 * 179.97438 * 5 2 1 35 35 H 0.96995 * 120.00366 * 355.00142 * 9 7 6 36 36 H 1.08003 * 119.97645 * 359.97438 * 11 10 9 37 37 H 1.08007 * 119.69009 * 179.97438 * 12 11 10 38 38 H 1.07993 * 119.71712 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.02926 * 179.97438 * 14 13 12 40 40 H 0.96998 * 119.99652 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 8 1.5560 -2.0902 1.2492 7 6 1.9183 -2.8666 2.2879 8 8 2.6192 -2.4126 3.1704 9 7 1.5075 -4.1489 2.3461 10 6 1.9656 -4.9807 3.3632 11 6 2.2117 -4.4686 4.6278 12 6 2.6662 -5.2997 5.6343 13 6 2.8805 -6.6504 5.3936 14 6 2.6465 -7.1809 4.1583 15 6 2.1784 -6.3575 3.1173 16 6 1.9284 -6.8992 1.8389 17 1 1.1504 -6.4806 1.2178 18 6 2.6886 -7.9791 1.3756 19 7 2.3092 -8.6369 0.3099 20 14 4.2448 -8.4814 2.2786 21 1 3.9200 -9.5290 3.2796 22 1 5.2312 -9.0155 1.3054 23 1 4.8204 -7.2990 2.9684 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2073 -2.1393 32 1 3.1301 -0.7216 -1.2490 33 1 1.6767 -0.2075 2.1392 34 1 3.1300 -0.7216 1.2490 35 1 0.8925 -4.4920 1.6791 36 1 2.0481 -3.4196 4.8265 37 1 2.8565 -4.8947 6.6174 38 1 3.2355 -7.2865 6.1908 39 1 2.8165 -8.2325 3.9806 40 1 2.8362 -9.3851 -0.0114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194385684.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:03 Heat of formation + Delta-G solvation = -92.105537 kcal Electronic energy + Delta-G solvation = -21568.104711 eV Core-core repulsion = 18346.492374 eV Total energy + Delta-G solvation = -3221.612337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.82599 -39.99835 -38.53857 -36.63532 -35.73289 -35.50948 -32.33627 -30.55183 -28.18006 -28.16179 -27.82847 -26.87521 -24.13565 -22.94971 -21.68898 -20.09472 -19.79565 -19.35413 -18.42123 -17.63359 -17.50464 -16.63642 -15.90875 -15.81667 -15.64997 -15.25416 -15.04510 -14.77480 -14.46212 -14.11110 -13.94066 -13.88349 -13.48901 -13.02322 -12.94914 -12.90575 -12.74344 -12.55413 -12.28084 -11.94811 -11.87177 -11.84675 -11.73518 -11.66134 -11.49453 -11.41247 -11.25826 -10.79324 -9.51377 -8.97806 -8.88245 -6.46609 0.61938 0.80349 1.19593 1.27058 1.38710 1.49262 1.83711 2.12014 2.63920 3.24210 3.44829 3.70581 3.74335 4.00612 4.26687 4.32610 4.41631 4.42018 4.47772 4.62897 4.76179 4.79065 4.80773 4.89875 4.90250 4.99728 5.03499 5.09954 5.12399 5.21521 5.29415 5.37327 5.41209 5.47750 5.58543 5.65950 5.89567 5.98170 6.07982 6.35161 6.46008 6.73431 6.78605 7.34513 8.18679 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.004929 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.585214 B = 5679.707612 C = 6570.273403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.136 4.136 4 C -0.142 4.142 5 C 0.089 3.911 6 O -0.363 6.363 7 C 0.642 3.358 8 O -0.594 6.594 9 N -0.620 5.620 10 C 0.033 3.967 11 C -0.090 4.090 12 C -0.213 4.213 13 C -0.088 4.088 14 C -0.236 4.236 15 C 0.067 3.933 16 C -0.473 4.473 17 H 0.070 0.930 18 C 0.051 3.949 19 N -0.847 5.847 20 Si 0.960 3.040 21 H -0.252 1.252 22 H -0.284 1.284 23 H -0.259 1.259 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.415 0.585 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.788 13.551 -0.631 13.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.065 4.065 3 C -0.193 4.193 4 C -0.199 4.199 5 C 0.015 3.985 6 O -0.277 6.277 7 C 0.396 3.604 8 O -0.486 6.486 9 N -0.269 5.269 10 C -0.060 4.060 11 C -0.110 4.110 12 C -0.232 4.232 13 C -0.106 4.106 14 C -0.256 4.256 15 C 0.063 3.937 16 C -0.503 4.503 17 H 0.088 0.912 18 C -0.164 4.164 19 N -0.474 5.474 20 Si 0.785 3.215 21 H -0.178 1.178 22 H -0.211 1.211 23 H -0.183 1.183 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.252 0.748 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.124 0.876 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.468 13.692 -0.535 13.710 hybrid contribution 0.252 -0.714 -0.284 0.808 sum -0.216 12.978 -0.819 13.006 Atomic orbital electron populations 1.21845 0.93223 1.01909 1.02728 1.20725 0.97205 0.95938 0.92608 1.21813 1.01500 0.92427 1.03553 1.21862 1.00887 1.00161 0.97018 1.23357 0.98921 0.76087 1.00125 1.86241 1.71696 1.26134 1.43598 1.18156 0.78655 0.82512 0.81090 1.90891 1.42683 1.74150 1.40865 1.41430 1.47656 1.07193 1.30671 1.17597 1.11592 0.89006 0.87788 1.21034 0.99172 0.99684 0.91135 1.20777 1.09571 0.93623 0.99260 1.20783 0.98046 0.95514 0.96263 1.20835 1.12015 0.98606 0.94160 1.17664 0.92081 0.90215 0.93731 1.19221 1.17618 1.13104 1.00324 0.91240 1.26653 1.01152 0.93492 0.95060 1.69677 1.38398 1.16971 1.22334 0.85590 0.78004 0.79872 0.78076 1.17762 1.21084 1.18312 0.92216 0.90615 0.93523 0.92064 0.89911 0.91638 0.93757 0.90500 0.92786 0.91123 0.91943 0.74817 0.86295 0.85069 0.84925 0.87555 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.33 71.98 0.60 -2.07 16 2 C -0.06 -1.30 0.86 -52.18 -0.04 -1.35 16 3 C -0.14 -1.98 8.47 71.98 0.61 -1.37 16 4 C -0.14 -2.98 8.33 71.98 0.60 -2.38 16 5 C 0.09 2.43 4.33 71.98 0.31 2.74 16 6 O -0.36 -12.43 8.93 -55.56 -0.50 -12.92 16 7 C 0.64 26.36 8.59 129.79 1.12 27.47 16 8 O -0.59 -26.68 13.51 19.83 0.27 -26.41 16 9 N -0.62 -26.74 5.04 -428.21 -2.16 -28.90 16 10 C 0.03 1.58 6.35 38.87 0.25 1.83 16 11 C -0.09 -3.99 8.69 22.36 0.19 -3.80 16 12 C -0.21 -8.52 10.04 22.41 0.22 -8.30 16 13 C -0.09 -3.54 9.97 22.00 0.22 -3.32 16 14 C -0.24 -10.93 6.95 22.46 0.16 -10.78 16 15 C 0.07 3.35 5.14 -21.18 -0.11 3.25 16 16 C -0.47 -25.15 9.13 23.38 0.21 -24.93 16 17 H 0.07 3.83 7.08 -2.91 -0.02 3.81 16 18 C 0.05 2.66 5.47 85.25 0.47 3.12 16 19 N -0.85 -45.01 13.93 21.83 0.30 -44.71 16 20 Si 0.96 42.40 24.40 68.60 1.67 44.07 16 21 H -0.25 -10.34 6.66 99.48 0.66 -9.68 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.26 -12.01 6.69 99.48 0.67 -11.34 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.07 7.68 -2.39 -0.02 1.05 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.04 1.12 7.68 -2.39 -0.02 1.10 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.42 16.93 7.68 -92.71 -0.71 16.22 16 36 H 0.12 5.23 6.15 -2.91 -0.02 5.21 16 37 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 38 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 39 H 0.11 4.82 4.42 -2.91 -0.01 4.81 16 40 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 Total: -1.00 -60.67 325.28 4.64 -56.03 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.24 Total: 32.72 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 4.80 Total: -19.87 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -1.85 Total: -73.61 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.23 Total: -39.33 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.67 Total: 44.07 kcal Total: -60.67 4.64 -56.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194385684.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.079 kcal (2) G-P(sol) polarization free energy of solvation -60.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds