Wall clock time and date at job start Mon Mar 30 2020 01:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47383 * 2 1 4 4 C 1.52996 * 109.47383 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46935 * 179.97438 * 4 3 2 6 6 C 1.37181 * 120.00036 * 269.99667 * 5 4 3 7 7 H 1.07999 * 119.99798 * 139.24727 * 6 5 4 8 8 C 1.38889 * 120.00089 * 319.24944 * 6 5 4 9 9 N 1.31464 * 119.99946 * 342.18485 * 8 6 5 10 10 Si 1.86799 * 120.00236 * 162.18302 * 8 6 5 11 11 H 1.48494 * 109.46764 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46843 * 119.99757 * 10 8 6 13 13 H 1.48496 * 109.47128 * 239.99931 * 10 8 6 14 14 C 1.34776 * 119.99922 * 90.00382 * 5 4 3 15 15 O 1.21513 * 120.00069 * 3.97944 * 14 5 4 16 16 O 1.34697 * 119.99572 * 183.98966 * 14 5 4 17 17 C 1.35935 * 116.99643 * 174.85355 * 16 14 5 18 18 C 1.38734 * 120.05464 * 256.91597 * 17 16 14 19 19 C 1.38143 * 119.93816 * 180.29749 * 18 17 16 20 20 C 1.38270 * 120.05905 * 359.44952 * 19 18 17 21 21 C 1.50693 * 119.94652 * 180.29823 * 20 19 18 22 22 C 1.38265 * 120.11026 * 0.55291 * 20 19 18 23 23 C 1.38150 * 120.05470 * 359.72361 * 22 20 19 24 24 H 1.08999 * 109.46884 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47104 * 300.00371 * 1 2 3 26 26 H 1.09004 * 109.46629 * 60.00142 * 1 2 3 27 27 H 1.09006 * 109.47611 * 240.00269 * 2 1 3 28 28 H 1.08996 * 109.47441 * 119.99777 * 2 1 3 29 29 H 1.09005 * 109.47245 * 59.99408 * 3 2 1 30 30 H 1.09006 * 109.46650 * 300.00154 * 3 2 1 31 31 H 1.08998 * 109.47302 * 60.00388 * 4 3 2 32 32 H 1.08994 * 109.47022 * 299.99458 * 4 3 2 33 33 H 0.97005 * 120.00124 * 179.97438 * 9 8 6 34 34 H 1.07994 * 120.02777 * 0.03052 * 18 17 16 35 35 H 1.08005 * 119.96755 * 179.72205 * 19 18 17 36 36 H 1.09005 * 109.47261 * 270.25871 * 21 20 19 37 37 H 1.09000 * 109.47031 * 30.25349 * 21 20 19 38 38 H 1.09001 * 109.47748 * 150.25430 * 21 20 19 39 39 H 1.07995 * 119.97491 * 179.70225 * 22 20 19 40 40 H 1.07996 * 120.02822 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.2865 3.4701 -1.1896 7 1 4.0053 4.5066 -1.3031 8 6 4.8791 2.7915 -2.2466 9 7 5.5328 1.6725 -2.0254 10 14 4.7472 3.4685 -3.9826 11 1 3.9659 4.7312 -3.9633 12 1 6.1077 3.7369 -4.5139 13 1 4.0637 2.4761 -4.8503 14 6 4.2835 3.4594 1.1657 15 8 4.1511 2.8646 2.2169 16 8 4.6551 4.7541 1.1664 17 6 4.7615 5.3648 2.3762 18 6 3.7667 6.2302 2.8077 19 6 3.8803 6.8543 4.0348 20 6 4.9787 6.6083 4.8379 21 6 5.0968 7.2852 6.1790 22 6 5.9715 5.7462 4.4102 23 6 5.8654 5.1240 3.1813 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.9289 -0.8909 32 1 3.9337 0.9286 0.8891 33 1 5.9464 1.1983 -2.7637 34 1 2.9064 6.4191 2.1828 35 1 3.1083 7.5315 4.3692 36 1 5.6185 8.2351 6.0619 37 1 4.1010 7.4652 6.5841 38 1 5.6563 6.6451 6.8612 39 1 6.8308 5.5594 5.0371 40 1 6.6413 4.4511 2.8474 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194444394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:12 Heat of formation + Delta-G solvation = -59.578279 kcal Electronic energy + Delta-G solvation = -21489.344159 eV Core-core repulsion = 18269.142310 eV Total energy + Delta-G solvation = -3220.201850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.23874 -38.47854 -36.67374 -34.94500 -33.98176 -31.88525 -31.45155 -30.71627 -28.52009 -26.34297 -24.93381 -23.35317 -22.55120 -21.38487 -20.48884 -19.73429 -18.43269 -16.79861 -16.08644 -15.83991 -15.19959 -14.80777 -14.74116 -14.36032 -14.04271 -13.65531 -13.51040 -13.27881 -13.20317 -12.93294 -12.33356 -12.23298 -12.02556 -11.71691 -11.46429 -11.36037 -11.20892 -11.15949 -10.93666 -10.62700 -10.52610 -10.35711 -10.25916 -9.94258 -9.76049 -9.56136 -8.95233 -8.68045 -8.10941 -7.56854 -6.37584 -4.13475 1.47020 1.65900 3.12683 3.21808 3.26415 3.43093 3.95262 4.08767 4.29341 4.96051 5.01307 5.04269 5.17238 5.34601 5.45063 5.46131 5.58168 5.61816 5.62977 5.65942 5.86495 5.92613 6.02981 6.19144 6.22100 6.27026 6.34189 6.37924 6.50040 6.56498 6.64907 6.77462 6.77651 6.83589 6.98112 7.12867 7.31076 7.50301 7.66312 7.94098 8.36546 9.06002 9.36917 9.93227 10.66051 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.005231 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.752951 B = 5351.739393 C = 6511.279472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.131 4.131 4 C 0.134 3.866 5 N -0.421 5.421 6 C -0.333 4.333 7 H 0.092 0.908 8 C 0.043 3.957 9 N -0.866 5.866 10 Si 0.920 3.080 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.279 1.279 14 C 0.606 3.394 15 O -0.613 6.613 16 O -0.300 6.300 17 C 0.123 3.877 18 C -0.124 4.124 19 C -0.110 4.110 20 C -0.103 4.103 21 C -0.108 4.108 22 C -0.109 4.109 23 C -0.115 4.115 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.269 0.731 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.123 0.877 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.609 5.021 7.360 9.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.169 4.169 4 C 0.012 3.988 5 N -0.146 5.146 6 C -0.460 4.460 7 H 0.109 0.891 8 C -0.162 4.162 9 N -0.503 5.503 10 Si 0.746 3.254 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.205 1.205 14 C 0.362 3.638 15 O -0.507 6.507 16 O -0.212 6.212 17 C 0.080 3.920 18 C -0.143 4.143 19 C -0.128 4.128 20 C -0.103 4.103 21 C -0.165 4.165 22 C -0.127 4.127 23 C -0.134 4.134 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.141 0.859 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.515 4.708 7.550 9.567 hybrid contribution 0.080 0.210 -0.975 1.001 sum -3.435 4.918 6.575 8.900 Atomic orbital electron populations 1.21753 0.96522 1.00750 1.01530 1.21420 0.95092 0.97466 1.01751 1.21961 0.97583 0.95779 1.01616 1.21449 0.91223 0.82221 1.03937 1.42389 1.58162 1.12181 1.01884 1.19515 1.40241 0.97927 0.88349 0.89066 1.25429 0.93768 0.96453 1.00563 1.69945 1.30523 1.17335 1.32452 0.85987 0.78210 0.79209 0.82016 1.19101 1.20659 1.20466 1.18788 0.79601 0.79682 0.85740 1.90841 1.61855 1.66382 1.31660 1.84361 1.81961 1.26382 1.28518 1.18434 0.93898 0.94383 0.85280 1.21201 0.97956 0.98826 0.96303 1.20777 0.97991 1.00314 0.93755 1.19858 0.95162 0.98505 0.96807 1.20727 1.02294 1.00005 0.93491 1.20824 0.98801 0.97289 0.95758 1.21392 0.98307 0.99628 0.94085 0.93343 0.93089 0.92958 0.92055 0.92325 0.93011 0.91850 0.87327 0.92375 0.92078 0.85526 0.85862 0.91470 0.91779 0.91745 0.85923 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.12 -1.96 5.93 -26.73 -0.16 -2.12 16 3 C -0.13 -2.63 5.54 -26.73 -0.15 -2.78 16 4 C 0.13 3.20 5.03 -4.04 -0.02 3.18 16 5 N -0.42 -11.07 2.50 -120.22 -0.30 -11.37 16 6 C -0.33 -8.84 8.88 -14.92 -0.13 -8.97 16 7 H 0.09 2.42 7.76 -52.49 -0.41 2.01 16 8 C 0.04 1.11 5.02 -17.47 -0.09 1.03 16 9 N -0.87 -23.10 11.47 55.49 0.64 -22.47 16 10 Si 0.92 19.82 29.59 -169.99 -5.03 14.79 16 11 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 14 C 0.61 16.01 8.22 54.05 0.44 16.45 16 15 O -0.61 -16.87 15.43 -19.28 -0.30 -17.17 16 16 O -0.30 -7.37 9.19 -24.78 -0.23 -7.60 16 17 C 0.12 2.59 5.15 -39.22 -0.20 2.39 16 18 C -0.12 -2.21 9.99 -39.43 -0.39 -2.60 16 19 C -0.11 -1.61 9.69 -39.60 -0.38 -2.00 16 20 C -0.10 -1.44 5.88 -104.60 -0.62 -2.06 16 21 C -0.11 -1.08 10.01 36.00 0.36 -0.72 16 22 C -0.11 -1.67 9.69 -39.60 -0.38 -2.05 16 23 C -0.12 -2.20 9.57 -39.43 -0.38 -2.57 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.11 2.72 5.62 -51.93 -0.29 2.43 16 32 H 0.06 1.43 7.37 -51.93 -0.38 1.04 16 33 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.13 2.10 8.06 -52.49 -0.42 1.67 16 35 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 38 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 39 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 340.60 15.07 5.13 5.13 Total: -1.00 -30.25 340.60 -7.95 -38.20 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.13 Total: 5.00 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -1.73 Total: -4.52 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.34 Total: -33.84 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.53 Total: -24.77 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.25 -7.95 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194444394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.378 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds