Wall clock time and date at job start Mon Mar 30 2020 01:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47383 * 2 1 4 4 C 1.52996 * 109.47383 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46935 * 179.97438 * 4 3 2 6 6 C 1.37181 * 120.00036 * 269.99667 * 5 4 3 7 7 H 1.07999 * 119.99798 * 139.24727 * 6 5 4 8 8 C 1.38889 * 120.00089 * 319.24944 * 6 5 4 9 9 N 1.31464 * 119.99946 * 342.18485 * 8 6 5 10 10 Si 1.86799 * 120.00236 * 162.18302 * 8 6 5 11 11 H 1.48494 * 109.46764 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46843 * 119.99757 * 10 8 6 13 13 H 1.48496 * 109.47128 * 239.99931 * 10 8 6 14 14 C 1.34776 * 119.99922 * 90.00382 * 5 4 3 15 15 O 1.21513 * 120.00069 * 3.97944 * 14 5 4 16 16 O 1.34697 * 119.99572 * 183.98966 * 14 5 4 17 17 C 1.35935 * 116.99643 * 174.85355 * 16 14 5 18 18 C 1.38734 * 120.05464 * 256.91597 * 17 16 14 19 19 C 1.38143 * 119.93816 * 180.29749 * 18 17 16 20 20 C 1.38270 * 120.05905 * 359.44952 * 19 18 17 21 21 C 1.50693 * 119.94652 * 180.29823 * 20 19 18 22 22 C 1.38265 * 120.11026 * 0.55291 * 20 19 18 23 23 C 1.38150 * 120.05470 * 359.72361 * 22 20 19 24 24 H 1.08999 * 109.46884 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47104 * 300.00371 * 1 2 3 26 26 H 1.09004 * 109.46629 * 60.00142 * 1 2 3 27 27 H 1.09006 * 109.47611 * 240.00269 * 2 1 3 28 28 H 1.08996 * 109.47441 * 119.99777 * 2 1 3 29 29 H 1.09005 * 109.47245 * 59.99408 * 3 2 1 30 30 H 1.09006 * 109.46650 * 300.00154 * 3 2 1 31 31 H 1.08998 * 109.47302 * 60.00388 * 4 3 2 32 32 H 1.08994 * 109.47022 * 299.99458 * 4 3 2 33 33 H 0.97005 * 120.00124 * 179.97438 * 9 8 6 34 34 H 1.07994 * 120.02777 * 0.03052 * 18 17 16 35 35 H 1.08005 * 119.96755 * 179.72205 * 19 18 17 36 36 H 1.09005 * 109.47261 * 270.25871 * 21 20 19 37 37 H 1.09000 * 109.47031 * 30.25349 * 21 20 19 38 38 H 1.09001 * 109.47748 * 150.25430 * 21 20 19 39 39 H 1.07995 * 119.97491 * 179.70225 * 22 20 19 40 40 H 1.07996 * 120.02822 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.2865 3.4701 -1.1896 7 1 4.0053 4.5066 -1.3031 8 6 4.8791 2.7915 -2.2466 9 7 5.5328 1.6725 -2.0254 10 14 4.7472 3.4685 -3.9826 11 1 3.9659 4.7312 -3.9633 12 1 6.1077 3.7369 -4.5139 13 1 4.0637 2.4761 -4.8503 14 6 4.2835 3.4594 1.1657 15 8 4.1511 2.8646 2.2169 16 8 4.6551 4.7541 1.1664 17 6 4.7615 5.3648 2.3762 18 6 3.7667 6.2302 2.8077 19 6 3.8803 6.8543 4.0348 20 6 4.9787 6.6083 4.8379 21 6 5.0968 7.2852 6.1790 22 6 5.9715 5.7462 4.4102 23 6 5.8654 5.1240 3.1813 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.9289 -0.8909 32 1 3.9337 0.9286 0.8891 33 1 5.9464 1.1983 -2.7637 34 1 2.9064 6.4191 2.1828 35 1 3.1083 7.5315 4.3692 36 1 5.6185 8.2351 6.0619 37 1 4.1010 7.4652 6.5841 38 1 5.6563 6.6451 6.8612 39 1 6.8308 5.5594 5.0371 40 1 6.6413 4.4511 2.8474 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194444394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:12 Heat of formation + Delta-G solvation = -74.773257 kcal Electronic energy + Delta-G solvation = -21490.003063 eV Core-core repulsion = 18269.142310 eV Total energy + Delta-G solvation = -3220.860753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.98855 -40.02237 -38.38635 -36.86567 -35.59654 -33.60598 -32.92911 -32.02182 -30.10567 -27.61323 -26.84930 -24.93414 -23.86797 -22.83933 -21.98082 -21.51135 -20.31519 -18.56236 -18.05248 -17.51406 -16.62794 -16.53543 -16.23416 -15.97219 -15.71566 -15.14860 -14.78617 -14.62645 -14.47801 -14.37428 -13.86347 -13.67473 -13.33300 -13.17834 -13.04814 -12.86024 -12.81855 -12.49295 -12.38307 -12.17015 -12.07944 -12.00194 -11.86397 -11.59577 -11.49731 -11.44765 -10.93044 -9.99545 -9.62766 -9.42088 -8.36589 -6.21213 0.08205 0.35049 1.40097 1.44197 1.58004 1.76824 1.96704 2.35867 2.77559 2.98162 3.63542 3.84517 3.94777 3.99578 4.05515 4.16270 4.28176 4.39063 4.42018 4.45847 4.67409 4.77519 4.78556 4.82247 4.91381 4.96727 5.03112 5.03943 5.15368 5.15725 5.30868 5.32360 5.39675 5.42339 5.45087 5.50852 5.57734 5.66787 5.89045 6.13005 6.34759 7.03206 7.34841 7.93499 8.67889 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.005231 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.752951 B = 5351.739393 C = 6511.279472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.117 4.117 4 C 0.135 3.865 5 N -0.431 5.431 6 C -0.356 4.356 7 H 0.084 0.916 8 C 0.007 3.993 9 N -0.895 5.895 10 Si 0.991 3.009 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.266 1.266 14 C 0.595 3.405 15 O -0.636 6.636 16 O -0.313 6.313 17 C 0.067 3.933 18 C -0.134 4.134 19 C -0.103 4.103 20 C -0.090 4.090 21 C -0.107 4.107 22 C -0.108 4.108 23 C -0.138 4.138 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.040 0.960 33 H 0.276 0.724 34 H 0.130 0.870 35 H 0.164 0.836 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.153 0.847 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 6.345 8.226 11.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.156 4.156 4 C 0.013 3.987 5 N -0.157 5.157 6 C -0.484 4.484 7 H 0.102 0.898 8 C -0.197 4.197 9 N -0.531 5.531 10 Si 0.814 3.186 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.191 1.191 14 C 0.352 3.648 15 O -0.533 6.533 16 O -0.225 6.225 17 C 0.024 3.976 18 C -0.153 4.153 19 C -0.121 4.121 20 C -0.090 4.090 21 C -0.163 4.163 22 C -0.126 4.126 23 C -0.157 4.157 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.147 0.853 35 H 0.182 0.818 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.171 0.829 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.499 6.038 8.427 11.301 hybrid contribution 0.461 -0.128 -1.087 1.188 sum -4.038 5.910 7.340 10.252 Atomic orbital electron populations 1.21711 0.93991 1.02473 1.01826 1.21407 0.97243 0.94584 1.02056 1.21837 0.94704 0.98366 1.00707 1.21483 0.93666 0.81209 1.02315 1.42699 1.58175 1.12828 1.01968 1.19673 1.41582 0.98141 0.88963 0.89787 1.26308 0.92624 0.96511 1.04211 1.70035 1.30762 1.18377 1.33965 0.84921 0.78244 0.78867 0.76597 1.18563 1.20373 1.19135 1.19052 0.79585 0.80612 0.85597 1.90774 1.62947 1.67215 1.32331 1.84356 1.81762 1.25327 1.31073 1.18976 0.96408 0.96636 0.85542 1.21399 0.97353 0.98690 0.97812 1.21257 0.99072 0.99709 0.92067 1.20441 0.93597 0.96656 0.98266 1.20839 1.04057 1.00589 0.90795 1.21197 1.00342 0.96728 0.94319 1.21435 0.97716 1.00707 0.95798 0.90896 0.92996 0.92509 0.91621 0.92194 0.94263 0.92206 0.88481 0.94114 0.91481 0.85251 0.81843 0.89419 0.89910 0.90442 0.82892 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.11 -3.75 5.93 30.59 0.18 -3.57 16 3 C -0.12 -4.88 5.54 30.59 0.17 -4.71 16 4 C 0.14 6.78 5.03 86.38 0.43 7.21 16 5 N -0.43 -23.93 2.50 -764.64 -1.91 -25.84 16 6 C -0.36 -19.70 8.88 84.01 0.75 -18.96 16 7 H 0.08 4.65 7.76 -2.91 -0.02 4.63 16 8 C 0.01 0.34 5.02 84.90 0.43 0.77 16 9 N -0.89 -48.83 11.47 21.66 0.25 -48.59 16 10 Si 0.99 40.84 29.59 68.60 2.03 42.87 16 11 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 12 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 13 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 14 C 0.60 33.47 8.22 129.79 1.07 34.54 16 15 O -0.64 -37.16 15.43 19.80 0.31 -36.86 16 16 O -0.31 -16.46 9.19 0.10 0.00 -16.46 16 17 C 0.07 2.94 5.15 22.51 0.12 3.06 16 18 C -0.13 -4.81 9.99 22.37 0.22 -4.59 16 19 C -0.10 -2.78 9.69 22.25 0.22 -2.56 16 20 C -0.09 -2.24 5.88 -19.85 -0.12 -2.36 16 21 C -0.11 -1.61 10.01 71.23 0.71 -0.90 16 22 C -0.11 -3.20 9.69 22.26 0.22 -2.99 16 23 C -0.14 -5.48 9.57 22.37 0.21 -5.27 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 31 H 0.10 5.07 5.62 -2.39 -0.01 5.06 16 32 H 0.04 2.12 7.37 -2.39 -0.02 2.11 16 33 H 0.28 13.91 8.31 -92.70 -0.77 13.14 16 34 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 35 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.09 1.07 8.14 -2.38 -0.02 1.06 16 37 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 38 H 0.08 1.03 8.08 -2.39 -0.02 1.02 16 39 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 40 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -69.58 340.60 7.00 -62.58 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 1.01 Total: 25.63 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 5.32 Total: -3.34 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -1.66 Total: -74.43 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: 0.31 Total: -53.31 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -69.58 7.00 -62.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194444394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.196 kcal (2) G-P(sol) polarization free energy of solvation -69.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds