Wall clock time and date at job start Mon Mar 30 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46914 * 2 1 4 4 H 1.08998 * 109.47578 * 305.00043 * 3 2 1 5 5 C 1.52998 * 109.47368 * 65.00025 * 3 2 1 6 6 C 1.52998 * 109.47364 * 185.00056 * 3 2 1 7 7 O 1.45195 * 109.47630 * 174.99988 * 6 3 2 8 8 C 1.34647 * 117.00337 * 179.97438 * 7 6 3 9 9 O 1.21506 * 119.99874 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00035 * 179.97438 * 8 7 6 11 11 C 1.39257 * 119.99780 * 183.01007 * 10 8 7 12 12 C 1.39477 * 119.83463 * 322.19545 * 11 10 8 13 13 C 1.36374 * 120.16984 * 179.76229 * 12 11 10 14 14 C 1.40869 * 119.82759 * 0.51299 * 13 12 11 15 15 C 1.41148 * 120.16551 * 179.72095 * 14 13 12 16 16 H 1.08002 * 120.00462 * 158.02033 * 15 14 13 17 17 C 1.39898 * 120.00143 * 338.02268 * 15 14 13 18 18 N 1.30878 * 119.99840 * 327.60810 * 17 15 14 19 19 Si 1.86803 * 120.00099 * 147.60962 * 17 15 14 20 20 H 1.48500 * 109.47180 * 94.98783 * 19 17 15 21 21 H 1.48501 * 109.46703 * 214.98694 * 19 17 15 22 22 H 1.48497 * 109.47161 * 334.98535 * 19 17 15 23 23 C 1.40867 * 119.67055 * 359.74153 * 14 13 12 24 24 C 1.36375 * 119.82970 * 359.97438 * 23 14 13 25 25 H 1.09007 * 109.46848 * 299.99941 * 1 2 3 26 26 H 1.09002 * 109.47171 * 59.99895 * 1 2 3 27 27 H 1.09002 * 109.46817 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47430 * 240.00392 * 2 1 3 29 29 H 1.09000 * 109.47658 * 119.99945 * 2 1 3 30 30 H 1.09009 * 109.46847 * 60.00240 * 5 3 2 31 31 H 1.08997 * 109.47396 * 179.97438 * 5 3 2 32 32 H 1.09003 * 109.47250 * 300.00151 * 5 3 2 33 33 H 1.09007 * 109.46892 * 55.00079 * 6 3 2 34 34 H 1.09006 * 109.47167 * 295.00532 * 6 3 2 35 35 H 0.96998 * 119.99817 * 3.28352 * 10 8 7 36 36 H 1.08000 * 119.91103 * 0.02562 * 12 11 10 37 37 H 1.07999 * 120.08897 * 180.23610 * 13 12 11 38 38 H 0.97000 * 119.99930 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.09027 * 179.97438 * 23 14 13 40 40 H 1.07998 * 119.91708 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5647 1.4445 -0.1257 7 8 4.0389 2.8116 -0.2447 8 6 5.3683 2.9894 -0.3641 9 8 6.1117 2.0284 -0.3692 10 7 5.8741 4.2334 -0.4790 11 6 7.2423 4.4142 -0.6654 12 6 8.1482 3.5858 -0.0032 13 6 9.4894 3.7536 -0.1845 14 6 9.9593 4.7738 -1.0348 15 6 11.3460 4.9576 -1.2230 16 1 11.7087 5.4666 -2.1037 17 6 12.2508 4.4803 -0.2686 18 7 11.9152 4.4550 0.9961 19 14 13.9379 3.8792 -0.7995 20 1 14.9221 4.9829 -0.6633 21 1 14.3500 2.7397 0.0589 22 1 13.8828 3.4372 -2.2161 23 6 9.0383 5.6098 -1.6959 24 6 7.6999 5.4261 -1.5092 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0699 1.5875 2.1492 31 1 1.9989 3.1541 1.3075 32 1 0.5489 2.1253 1.3969 33 1 3.8570 0.8802 -1.0114 34 1 4.0029 0.9836 0.7596 35 1 5.2858 5.0028 -0.4279 36 1 7.7865 2.8067 0.6515 37 1 10.1896 3.1090 0.3259 38 1 12.5424 4.1238 1.6578 39 1 9.3910 6.3943 -2.3490 40 1 6.9926 6.0665 -2.0151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194801497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:02 Heat of formation + Delta-G solvation = -82.147477 kcal Electronic energy + Delta-G solvation = -20664.553125 eV Core-core repulsion = 17443.372602 eV Total energy + Delta-G solvation = -3221.180524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.19077 -38.10817 -36.96604 -35.49343 -34.46753 -33.04972 -30.37850 -29.51774 -29.07116 -27.06279 -25.10474 -23.64197 -21.70571 -21.26395 -20.31141 -19.95844 -18.22241 -17.36087 -16.65191 -16.32922 -15.66713 -15.29162 -15.06140 -14.68985 -14.00885 -13.77284 -13.62843 -13.29376 -12.72596 -12.55927 -12.32720 -12.16947 -12.11105 -12.03277 -11.83170 -11.35228 -11.18227 -11.12545 -11.06216 -10.92379 -10.79726 -10.68185 -10.31249 -10.22972 -9.76551 -9.60781 -9.08751 -8.93568 -7.55616 -7.19090 -6.87775 -4.29615 2.49060 2.72689 3.01789 3.05740 3.08802 3.16176 3.50260 3.88907 4.43166 4.49945 4.59930 4.64757 4.98602 5.03313 5.22601 5.26051 5.42259 5.49019 5.56228 5.65285 5.71441 5.76009 5.78762 5.86113 6.09901 6.14958 6.17270 6.35253 6.58689 6.79591 6.96836 7.03115 7.08209 7.25305 7.55494 7.65489 7.91932 8.01855 8.17841 8.26385 8.56011 8.82279 8.85646 9.03481 10.01533 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039184 B = 0.003007 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.400622 B = 9307.989974 C = 9654.553503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.092 4.092 4 H 0.081 0.919 5 C -0.148 4.148 6 C 0.092 3.908 7 O -0.376 6.376 8 C 0.633 3.367 9 O -0.564 6.564 10 N -0.626 5.626 11 C -0.012 4.012 12 C -0.073 4.073 13 C -0.173 4.173 14 C 0.113 3.887 15 C -0.464 4.464 16 H 0.083 0.917 17 C 0.087 3.913 18 N -0.766 5.766 19 Si 0.897 3.103 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.257 1.257 23 C -0.222 4.222 24 C -0.090 4.090 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.284 0.716 39 H 0.097 0.903 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.045 -4.543 0.263 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.110 4.110 4 H 0.099 0.901 5 C -0.205 4.205 6 C 0.017 3.983 7 O -0.291 6.291 8 C 0.386 3.614 9 O -0.452 6.452 10 N -0.276 5.276 11 C -0.103 4.103 12 C -0.093 4.093 13 C -0.193 4.193 14 C 0.110 3.890 15 C -0.491 4.491 16 H 0.101 0.899 17 C -0.135 4.135 18 N -0.388 5.388 19 Si 0.720 3.280 20 H -0.195 1.195 21 H -0.198 1.198 22 H -0.181 1.181 23 C -0.242 4.242 24 C -0.110 4.110 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.677 -5.126 0.517 16.502 hybrid contribution 0.560 -0.020 -0.068 0.564 sum -15.118 -5.146 0.449 15.976 Atomic orbital electron populations 1.21793 0.95276 1.01688 1.02105 1.21498 0.96307 0.95219 1.02585 1.21225 0.92856 0.97050 0.99907 0.90084 1.21865 1.01093 1.01260 0.96294 1.22946 0.93553 0.79436 1.02381 1.86166 1.23455 1.32595 1.86925 1.18244 0.80527 0.84964 0.77640 1.90979 1.58775 1.39897 1.55597 1.41532 1.07876 1.04406 1.73809 1.16866 0.78901 1.06110 1.08454 1.20412 0.93079 0.97987 0.97797 1.20703 0.93327 1.00570 1.04698 1.17610 0.92979 0.88986 0.89428 1.19504 0.90844 1.33085 1.05674 0.89943 1.25962 1.01011 0.92650 0.93898 1.69945 1.37401 1.29912 1.01542 0.86492 0.81431 0.79354 0.80707 1.19454 1.19843 1.18067 1.20459 0.91984 1.03099 1.08675 1.20026 0.95684 0.98043 0.97227 0.92319 0.92626 0.92634 0.91571 0.91529 0.92698 0.91867 0.92366 0.91407 0.91390 0.76581 0.87956 0.87485 0.90493 0.88450 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.67 37.16 0.36 -0.65 16 2 C -0.12 -0.94 5.40 -26.73 -0.14 -1.09 16 3 C -0.09 -0.89 2.63 -90.62 -0.24 -1.13 16 4 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 5 C -0.15 -1.36 8.85 37.16 0.33 -1.03 16 6 C 0.09 1.20 4.85 37.16 0.18 1.38 16 7 O -0.38 -5.96 9.81 -40.34 -0.40 -6.35 16 8 C 0.63 12.40 8.56 54.06 0.46 12.86 16 9 O -0.56 -12.96 13.76 -19.28 -0.27 -13.22 16 10 N -0.63 -11.99 5.30 -14.14 -0.07 -12.07 16 11 C -0.01 -0.28 6.25 -83.56 -0.52 -0.80 16 12 C -0.07 -1.84 8.59 -39.79 -0.34 -2.18 16 13 C -0.17 -4.64 8.74 -39.26 -0.34 -4.99 16 14 C 0.11 3.02 5.57 -106.80 -0.60 2.42 16 15 C -0.46 -12.19 8.94 -37.86 -0.34 -12.53 16 16 H 0.08 2.07 8.02 -52.49 -0.42 1.65 16 17 C 0.09 2.16 4.77 -17.34 -0.08 2.08 16 18 N -0.77 -19.61 11.78 55.55 0.65 -18.95 16 19 Si 0.90 18.32 29.66 -169.99 -5.04 13.28 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 22 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 23 C -0.22 -5.40 9.74 -39.26 -0.38 -5.78 16 24 C -0.09 -1.99 9.90 -39.79 -0.39 -2.39 16 25 H 0.06 0.37 6.57 -51.92 -0.34 0.03 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 32 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 33 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.40 6.22 8.93 -40.82 -0.36 5.86 16 36 H 0.10 2.60 6.46 -52.49 -0.34 2.26 16 37 H 0.11 2.94 6.52 -52.49 -0.34 2.60 16 38 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -29.49 334.51 -8.05 -37.54 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.92 Total: 8.57 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.05 Total: -13.82 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.58 Total: -31.02 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.66 Total: -19.58 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.04 Total: 13.28 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.49 -8.05 -37.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194801497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.608 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds