Wall clock time and date at job start Mon Mar 30 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46914 * 2 1 4 4 H 1.08998 * 109.47578 * 305.00043 * 3 2 1 5 5 C 1.52998 * 109.47368 * 65.00025 * 3 2 1 6 6 C 1.52998 * 109.47364 * 185.00056 * 3 2 1 7 7 O 1.45195 * 109.47630 * 174.99988 * 6 3 2 8 8 C 1.34647 * 117.00337 * 179.97438 * 7 6 3 9 9 O 1.21506 * 119.99874 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00035 * 179.97438 * 8 7 6 11 11 C 1.39257 * 119.99780 * 183.01007 * 10 8 7 12 12 C 1.39477 * 119.83463 * 322.19545 * 11 10 8 13 13 C 1.36374 * 120.16984 * 179.76229 * 12 11 10 14 14 C 1.40869 * 119.82759 * 0.51299 * 13 12 11 15 15 C 1.41148 * 120.16551 * 179.72095 * 14 13 12 16 16 H 1.08002 * 120.00462 * 158.02033 * 15 14 13 17 17 C 1.39898 * 120.00143 * 338.02268 * 15 14 13 18 18 N 1.30878 * 119.99840 * 327.60810 * 17 15 14 19 19 Si 1.86803 * 120.00099 * 147.60962 * 17 15 14 20 20 H 1.48500 * 109.47180 * 94.98783 * 19 17 15 21 21 H 1.48501 * 109.46703 * 214.98694 * 19 17 15 22 22 H 1.48497 * 109.47161 * 334.98535 * 19 17 15 23 23 C 1.40867 * 119.67055 * 359.74153 * 14 13 12 24 24 C 1.36375 * 119.82970 * 359.97438 * 23 14 13 25 25 H 1.09007 * 109.46848 * 299.99941 * 1 2 3 26 26 H 1.09002 * 109.47171 * 59.99895 * 1 2 3 27 27 H 1.09002 * 109.46817 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47430 * 240.00392 * 2 1 3 29 29 H 1.09000 * 109.47658 * 119.99945 * 2 1 3 30 30 H 1.09009 * 109.46847 * 60.00240 * 5 3 2 31 31 H 1.08997 * 109.47396 * 179.97438 * 5 3 2 32 32 H 1.09003 * 109.47250 * 300.00151 * 5 3 2 33 33 H 1.09007 * 109.46892 * 55.00079 * 6 3 2 34 34 H 1.09006 * 109.47167 * 295.00532 * 6 3 2 35 35 H 0.96998 * 119.99817 * 3.28352 * 10 8 7 36 36 H 1.08000 * 119.91103 * 0.02562 * 12 11 10 37 37 H 1.07999 * 120.08897 * 180.23610 * 13 12 11 38 38 H 0.97000 * 119.99930 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.09027 * 179.97438 * 23 14 13 40 40 H 1.07998 * 119.91708 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5647 1.4445 -0.1257 7 8 4.0389 2.8116 -0.2447 8 6 5.3683 2.9894 -0.3641 9 8 6.1117 2.0284 -0.3692 10 7 5.8741 4.2334 -0.4790 11 6 7.2423 4.4142 -0.6654 12 6 8.1482 3.5858 -0.0032 13 6 9.4894 3.7536 -0.1845 14 6 9.9593 4.7738 -1.0348 15 6 11.3460 4.9576 -1.2230 16 1 11.7087 5.4666 -2.1037 17 6 12.2508 4.4803 -0.2686 18 7 11.9152 4.4550 0.9961 19 14 13.9379 3.8792 -0.7995 20 1 14.9221 4.9829 -0.6633 21 1 14.3500 2.7397 0.0589 22 1 13.8828 3.4372 -2.2161 23 6 9.0383 5.6098 -1.6959 24 6 7.6999 5.4261 -1.5092 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0699 1.5875 2.1492 31 1 1.9989 3.1541 1.3075 32 1 0.5489 2.1253 1.3969 33 1 3.8570 0.8802 -1.0114 34 1 4.0029 0.9836 0.7596 35 1 5.2858 5.0028 -0.4279 36 1 7.7865 2.8067 0.6515 37 1 10.1896 3.1090 0.3259 38 1 12.5424 4.1238 1.6578 39 1 9.3910 6.3943 -2.3490 40 1 6.9926 6.0665 -2.0151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194801497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:02 Heat of formation + Delta-G solvation = -98.476663 kcal Electronic energy + Delta-G solvation = -20665.261212 eV Core-core repulsion = 17443.372602 eV Total energy + Delta-G solvation = -3221.888610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.73086 -39.72922 -38.26096 -36.71130 -36.21664 -34.85735 -31.47636 -31.27154 -30.72763 -28.05898 -26.82834 -24.61035 -23.33972 -23.08434 -21.75726 -21.02648 -19.77956 -19.26004 -18.23651 -17.70057 -17.25588 -16.89071 -16.08891 -15.78638 -15.67517 -15.15745 -14.79519 -14.52901 -14.47282 -14.00896 -13.85357 -13.69896 -13.30692 -13.06049 -12.96311 -12.89562 -12.79096 -12.55502 -12.37456 -12.00823 -11.86008 -11.69616 -11.58567 -11.56739 -11.45450 -11.34837 -10.96537 -10.76076 -9.49247 -9.07349 -8.73658 -6.25561 0.77116 1.12757 1.20976 1.36866 1.44561 1.55249 1.85469 2.18023 2.63335 3.26118 3.69055 3.77830 3.81737 4.03702 4.31023 4.31633 4.41653 4.43624 4.53086 4.64091 4.71020 4.80602 4.87958 5.04905 5.05818 5.07790 5.13509 5.17833 5.19112 5.21946 5.32865 5.39062 5.46187 5.51233 5.64301 5.82429 6.03016 6.06452 6.29053 6.57220 6.62248 6.87518 6.97464 7.42890 8.18858 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039184 B = 0.003007 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.400622 B = 9307.989974 C = 9654.553503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.083 4.083 4 H 0.086 0.914 5 C -0.147 4.147 6 C 0.084 3.916 7 O -0.363 6.363 8 C 0.636 3.364 9 O -0.602 6.602 10 N -0.617 5.617 11 C -0.005 4.005 12 C -0.085 4.085 13 C -0.198 4.198 14 C 0.084 3.916 15 C -0.498 4.498 16 H 0.086 0.914 17 C 0.047 3.953 18 N -0.800 5.800 19 Si 0.972 3.028 20 H -0.255 1.255 21 H -0.268 1.268 22 H -0.258 1.258 23 C -0.232 4.232 24 C -0.081 4.081 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.421 0.579 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.293 0.707 39 H 0.113 0.887 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.456 -4.254 -0.415 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.102 4.102 4 H 0.104 0.896 5 C -0.204 4.204 6 C 0.009 3.991 7 O -0.277 6.277 8 C 0.389 3.611 9 O -0.493 6.493 10 N -0.269 5.269 11 C -0.097 4.097 12 C -0.105 4.105 13 C -0.218 4.218 14 C 0.081 3.919 15 C -0.525 4.525 16 H 0.104 0.896 17 C -0.173 4.173 18 N -0.423 5.423 19 Si 0.792 3.208 20 H -0.180 1.180 21 H -0.192 1.192 22 H -0.182 1.182 23 C -0.252 4.252 24 C -0.101 4.101 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.258 0.742 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.131 0.869 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.145 -4.811 -0.154 17.808 hybrid contribution 0.823 -0.127 0.170 0.850 sum -16.322 -4.938 0.016 17.053 Atomic orbital electron populations 1.21782 0.93906 1.02429 1.02505 1.21508 0.97394 0.93822 1.02727 1.21246 0.89968 0.98501 1.00462 0.89551 1.21870 1.02407 1.00319 0.95844 1.23317 0.95842 0.77935 1.01976 1.86200 1.20884 1.34349 1.86217 1.18334 0.81447 0.84469 0.76801 1.90964 1.60070 1.41159 1.57070 1.41321 1.06814 1.05296 1.73508 1.16908 0.80248 1.05203 1.07310 1.20444 0.93163 0.98539 0.98353 1.20613 0.93710 1.01367 1.06133 1.17949 0.94074 0.89635 0.90260 1.19776 0.91408 1.34886 1.06416 0.89648 1.26830 1.04931 0.91997 0.93525 1.69964 1.39197 1.30461 1.02686 0.85353 0.76422 0.79073 0.79922 1.17958 1.19221 1.18172 1.20746 0.92716 1.03061 1.08640 1.20368 0.95724 0.97762 0.96277 0.91825 0.92308 0.91793 0.91527 0.91428 0.92839 0.93073 0.90360 0.91780 0.92000 0.74168 0.88955 0.89520 0.89622 0.86851 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.67 71.98 0.70 -0.92 16 2 C -0.12 -1.64 5.40 30.59 0.17 -1.48 16 3 C -0.08 -1.46 2.63 -10.79 -0.03 -1.49 16 4 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 5 C -0.15 -2.43 8.85 71.98 0.64 -1.79 16 6 C 0.08 2.12 4.85 71.98 0.35 2.47 16 7 O -0.36 -11.04 9.81 -55.57 -0.55 -11.58 16 8 C 0.64 24.44 8.56 129.79 1.11 25.55 16 9 O -0.60 -27.91 13.76 19.82 0.27 -27.64 16 10 N -0.62 -22.70 5.30 -429.05 -2.28 -24.98 16 11 C 0.00 -0.21 6.25 38.56 0.24 0.03 16 12 C -0.08 -4.40 8.59 22.13 0.19 -4.21 16 13 C -0.20 -11.05 8.74 22.48 0.20 -10.86 16 14 C 0.08 4.57 5.57 -21.28 -0.12 4.45 16 15 C -0.50 -26.71 8.94 23.39 0.21 -26.50 16 16 H 0.09 4.36 8.02 -2.91 -0.02 4.34 16 17 C 0.05 2.36 4.77 85.24 0.41 2.76 16 18 N -0.80 -42.06 11.78 21.82 0.26 -41.80 16 19 Si 0.97 37.85 29.66 68.60 2.03 39.89 16 20 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 21 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 23 C -0.23 -11.14 9.74 22.48 0.22 -10.92 16 24 C -0.08 -3.47 9.90 22.13 0.22 -3.25 16 25 H 0.06 0.63 6.57 -2.38 -0.02 0.62 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.05 0.97 7.82 -2.39 -0.02 0.95 16 32 H 0.08 0.98 6.57 -2.39 -0.02 0.97 16 33 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.42 11.99 8.93 -92.71 -0.83 11.16 16 36 H 0.09 4.89 6.46 -2.91 -0.02 4.87 16 37 H 0.09 5.05 6.52 -2.91 -0.02 5.03 16 38 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 39 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 40 H 0.14 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -64.90 334.51 4.45 -60.45 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.21 Total: 31.82 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 4.49 Total: -26.16 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -2.02 Total: -66.78 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -0.27 Total: -39.22 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.89 kcal Total: -64.90 4.45 -60.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194801497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.023 kcal (2) G-P(sol) polarization free energy of solvation -64.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds