Wall clock time and date at job start Mon Mar 30 2020 02:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47308 * 2 1 4 4 H 1.09009 * 109.46744 * 55.00124 * 3 2 1 5 5 C 1.52999 * 109.47025 * 295.00253 * 3 2 1 6 6 C 1.52997 * 109.47372 * 174.99583 * 3 2 1 7 7 O 1.45193 * 109.47327 * 184.99991 * 6 3 2 8 8 C 1.34647 * 117.00218 * 180.02562 * 7 6 3 9 9 O 1.21505 * 119.99924 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00299 * 179.97438 * 8 7 6 11 11 C 1.39256 * 120.00383 * 175.70904 * 10 8 7 12 12 C 1.39471 * 119.83716 * 215.02218 * 11 10 8 13 13 C 1.36372 * 120.17131 * 179.72055 * 12 11 10 14 14 C 1.40867 * 119.82507 * 0.54844 * 13 12 11 15 15 C 1.41165 * 120.16588 * 179.70084 * 14 13 12 16 16 H 1.08000 * 120.00065 * 214.81120 * 15 14 13 17 17 C 1.39895 * 119.99601 * 34.80328 * 15 14 13 18 18 N 1.30882 * 120.00309 * 355.56242 * 17 15 14 19 19 Si 1.86797 * 119.99558 * 175.55748 * 17 15 14 20 20 H 1.48504 * 109.47084 * 90.00507 * 19 17 15 21 21 H 1.48502 * 109.46944 * 209.99885 * 19 17 15 22 22 H 1.48499 * 109.47499 * 330.00299 * 19 17 15 23 23 C 1.40872 * 119.67339 * 359.72392 * 14 13 12 24 24 C 1.36374 * 119.82432 * 0.02562 * 23 14 13 25 25 H 1.08997 * 109.47665 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47186 * 299.99872 * 1 2 3 27 27 H 1.08998 * 109.47360 * 59.99565 * 1 2 3 28 28 H 1.08997 * 109.47420 * 239.99674 * 2 1 3 29 29 H 1.09008 * 109.46792 * 119.99887 * 2 1 3 30 30 H 1.09002 * 109.47295 * 59.99581 * 5 3 2 31 31 H 1.09006 * 109.46719 * 180.02562 * 5 3 2 32 32 H 1.08998 * 109.46899 * 299.99276 * 5 3 2 33 33 H 1.09001 * 109.47491 * 305.00544 * 6 3 2 34 34 H 1.09003 * 109.46651 * 65.00251 * 6 3 2 35 35 H 0.97003 * 119.99875 * 355.71220 * 10 8 7 36 36 H 1.08004 * 119.91588 * 359.97438 * 12 11 10 37 37 H 1.07998 * 120.09199 * 180.26942 * 13 12 11 38 38 H 0.96995 * 119.99719 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.08432 * 179.97438 * 23 14 13 40 40 H 1.08002 * 119.91390 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1258 7 8 4.0390 2.8115 0.2448 8 6 5.3683 2.9893 0.3643 9 8 6.1118 2.0282 0.3685 10 7 5.8743 4.2332 0.4781 11 6 7.2387 4.4131 0.6913 12 6 7.6831 5.4645 1.4927 13 6 9.0173 5.6437 1.7106 14 6 9.9480 4.7703 1.1144 15 6 11.3311 4.9529 1.3300 16 1 12.0344 4.7328 0.5405 17 6 11.7907 5.4192 2.5663 18 7 10.9351 5.7686 3.4932 19 14 13.6254 5.5430 2.8944 20 1 14.1115 6.8859 2.4873 21 1 13.8841 5.3411 4.3427 22 1 14.3393 4.5007 2.1139 23 6 9.4918 3.7141 0.3016 24 6 8.1542 3.5446 0.0971 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 0.5489 2.1252 -1.3969 31 1 1.9990 3.1541 -1.3075 32 1 2.0699 1.5876 -2.1491 33 1 3.8570 0.8800 1.0114 34 1 4.0029 0.9836 -0.7596 35 1 5.2882 5.0032 0.4117 36 1 6.9685 6.1362 1.9452 37 1 9.3598 6.4556 2.3349 38 1 11.2538 6.0915 4.3504 39 1 10.1996 3.0408 -0.1591 40 1 7.8028 2.7356 -0.5261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194801498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:05 Heat of formation + Delta-G solvation = -79.621229 kcal Electronic energy + Delta-G solvation = -20635.775800 eV Core-core repulsion = 17414.704823 eV Total energy + Delta-G solvation = -3221.070977 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25757 -38.15727 -36.98957 -35.52905 -34.46399 -32.93523 -30.39045 -29.60863 -28.88070 -27.08133 -25.10792 -23.66231 -21.85708 -21.06473 -20.33977 -20.04677 -18.22948 -17.32474 -16.68233 -16.34201 -15.68303 -15.20328 -15.14321 -14.71436 -13.98211 -13.77385 -13.66683 -13.23100 -12.72836 -12.59031 -12.35289 -12.18911 -12.15284 -11.86305 -11.71290 -11.39801 -11.19466 -11.08770 -11.06210 -10.91407 -10.81296 -10.75101 -10.34696 -10.22352 -9.65181 -9.50216 -9.30699 -8.95660 -7.57224 -6.90324 -6.63237 -4.36056 2.45070 2.68277 3.07043 3.07774 3.10139 3.14972 3.47529 3.97345 4.39756 4.58233 4.62790 4.68913 4.94397 5.01815 5.21023 5.24265 5.40137 5.46361 5.54373 5.62547 5.70060 5.74290 5.77419 5.84253 6.07958 6.15152 6.18203 6.34956 6.61348 6.73642 6.90217 7.05480 7.17786 7.27662 7.62440 7.72670 7.84922 8.04518 8.21329 8.29516 8.61542 8.83545 8.91270 9.00413 10.27894 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.052508 B = 0.002835 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.124153 B = 9875.487253 C = 9966.101252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.092 4.092 4 H 0.081 0.919 5 C -0.148 4.148 6 C 0.092 3.908 7 O -0.376 6.376 8 C 0.634 3.366 9 O -0.563 6.563 10 N -0.628 5.628 11 C 0.013 3.987 12 C -0.116 4.116 13 C -0.141 4.141 14 C 0.101 3.899 15 C -0.459 4.459 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.811 5.811 19 Si 0.916 3.084 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.205 4.205 24 C -0.084 4.084 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.402 0.598 36 H 0.094 0.906 37 H 0.134 0.866 38 H 0.278 0.722 39 H 0.097 0.903 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.875 -4.709 -4.737 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.111 4.111 4 H 0.100 0.900 5 C -0.205 4.205 6 C 0.017 3.983 7 O -0.290 6.290 8 C 0.388 3.612 9 O -0.452 6.452 10 N -0.278 5.278 11 C -0.079 4.079 12 C -0.136 4.136 13 C -0.161 4.161 14 C 0.098 3.902 15 C -0.490 4.490 16 H 0.095 0.905 17 C -0.146 4.146 18 N -0.438 5.438 19 Si 0.741 3.259 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.225 4.225 24 C -0.104 4.104 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.236 0.764 36 H 0.112 0.888 37 H 0.152 0.848 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.585 -5.166 -4.488 17.021 hybrid contribution 0.538 0.232 0.356 0.686 sum -15.047 -4.933 -4.132 16.365 Atomic orbital electron populations 1.21790 0.95260 1.01704 1.02115 1.21498 0.96325 0.95192 1.02588 1.21231 0.92821 0.97086 0.99932 0.90046 1.21864 1.01128 1.01232 0.96273 1.22957 0.93594 0.79363 1.02408 1.86171 1.23349 1.32675 1.86851 1.18227 0.80595 0.84884 0.77532 1.90971 1.58703 1.39973 1.55513 1.41609 1.08279 1.04566 1.73365 1.17085 0.78960 1.03853 1.07968 1.20290 0.96563 0.98204 0.98584 1.21191 0.90650 1.01143 1.03150 1.17750 0.93785 0.88940 0.89726 1.19505 0.92536 1.38584 0.98381 0.90534 1.25893 1.00176 0.92646 0.95912 1.69760 1.35754 1.33148 1.05141 0.86182 0.82147 0.79441 0.78121 1.19510 1.20301 1.18714 1.20805 0.93798 1.00247 1.07609 1.20426 0.92806 0.98340 0.98866 0.92623 0.92616 0.92318 0.91536 0.91553 0.92344 0.91878 0.92711 0.91351 0.91370 0.76352 0.88828 0.84845 0.91095 0.88445 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 37.16 0.36 -0.63 16 2 C -0.12 -0.92 5.40 -26.73 -0.14 -1.07 16 3 C -0.09 -0.87 2.63 -90.62 -0.24 -1.11 16 4 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 5 C -0.15 -1.31 8.85 37.16 0.33 -0.98 16 6 C 0.09 1.17 4.85 37.16 0.18 1.35 16 7 O -0.38 -5.83 9.81 -40.34 -0.40 -6.23 16 8 C 0.63 12.18 8.58 54.05 0.46 12.65 16 9 O -0.56 -12.66 13.55 -19.28 -0.26 -12.92 16 10 N -0.63 -11.82 5.31 -14.14 -0.08 -11.90 16 11 C 0.01 0.28 6.31 -83.57 -0.53 -0.24 16 12 C -0.12 -2.66 9.90 -39.79 -0.39 -3.05 16 13 C -0.14 -3.63 8.62 -39.26 -0.34 -3.96 16 14 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 15 C -0.46 -12.21 9.02 -37.85 -0.34 -12.55 16 16 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 17 C 0.07 1.74 5.42 -17.34 -0.09 1.64 16 18 N -0.81 -21.04 10.60 55.55 0.59 -20.45 16 19 Si 0.92 18.96 29.56 -169.99 -5.03 13.93 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 C -0.20 -5.19 9.74 -39.26 -0.38 -5.58 16 24 C -0.08 -2.05 8.61 -39.79 -0.34 -2.39 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 31 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 6.13 8.92 -40.82 -0.36 5.77 16 36 H 0.09 1.87 8.06 -52.48 -0.42 1.44 16 37 H 0.13 3.52 6.13 -52.49 -0.32 3.20 16 38 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 39 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.11 2.60 6.22 -52.49 -0.33 2.28 16 LS Contribution 332.91 15.07 5.02 5.02 Total: -1.00 -29.53 332.91 -8.09 -37.62 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.87 Total: 8.76 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.06 Total: -13.83 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.51 Total: -32.35 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.66 Total: -19.15 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.53 -8.09 -37.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194801498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.003 kcal (2) G-P(sol) polarization free energy of solvation -29.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds