Wall clock time and date at job start Mon Mar 30 2020 02:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47308 * 2 1 4 4 H 1.09009 * 109.46744 * 55.00124 * 3 2 1 5 5 C 1.52999 * 109.47025 * 295.00253 * 3 2 1 6 6 C 1.52997 * 109.47372 * 174.99583 * 3 2 1 7 7 O 1.45193 * 109.47327 * 184.99991 * 6 3 2 8 8 C 1.34647 * 117.00218 * 180.02562 * 7 6 3 9 9 O 1.21505 * 119.99924 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00299 * 179.97438 * 8 7 6 11 11 C 1.39256 * 120.00383 * 175.70904 * 10 8 7 12 12 C 1.39471 * 119.83716 * 215.02218 * 11 10 8 13 13 C 1.36372 * 120.17131 * 179.72055 * 12 11 10 14 14 C 1.40867 * 119.82507 * 0.54844 * 13 12 11 15 15 C 1.41165 * 120.16588 * 179.70084 * 14 13 12 16 16 H 1.08000 * 120.00065 * 214.81120 * 15 14 13 17 17 C 1.39895 * 119.99601 * 34.80328 * 15 14 13 18 18 N 1.30882 * 120.00309 * 355.56242 * 17 15 14 19 19 Si 1.86797 * 119.99558 * 175.55748 * 17 15 14 20 20 H 1.48504 * 109.47084 * 90.00507 * 19 17 15 21 21 H 1.48502 * 109.46944 * 209.99885 * 19 17 15 22 22 H 1.48499 * 109.47499 * 330.00299 * 19 17 15 23 23 C 1.40872 * 119.67339 * 359.72392 * 14 13 12 24 24 C 1.36374 * 119.82432 * 0.02562 * 23 14 13 25 25 H 1.08997 * 109.47665 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47186 * 299.99872 * 1 2 3 27 27 H 1.08998 * 109.47360 * 59.99565 * 1 2 3 28 28 H 1.08997 * 109.47420 * 239.99674 * 2 1 3 29 29 H 1.09008 * 109.46792 * 119.99887 * 2 1 3 30 30 H 1.09002 * 109.47295 * 59.99581 * 5 3 2 31 31 H 1.09006 * 109.46719 * 180.02562 * 5 3 2 32 32 H 1.08998 * 109.46899 * 299.99276 * 5 3 2 33 33 H 1.09001 * 109.47491 * 305.00544 * 6 3 2 34 34 H 1.09003 * 109.46651 * 65.00251 * 6 3 2 35 35 H 0.97003 * 119.99875 * 355.71220 * 10 8 7 36 36 H 1.08004 * 119.91588 * 359.97438 * 12 11 10 37 37 H 1.07998 * 120.09199 * 180.26942 * 13 12 11 38 38 H 0.96995 * 119.99719 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.08432 * 179.97438 * 23 14 13 40 40 H 1.08002 * 119.91390 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1258 7 8 4.0390 2.8115 0.2448 8 6 5.3683 2.9893 0.3643 9 8 6.1118 2.0282 0.3685 10 7 5.8743 4.2332 0.4781 11 6 7.2387 4.4131 0.6913 12 6 7.6831 5.4645 1.4927 13 6 9.0173 5.6437 1.7106 14 6 9.9480 4.7703 1.1144 15 6 11.3311 4.9529 1.3300 16 1 12.0344 4.7328 0.5405 17 6 11.7907 5.4192 2.5663 18 7 10.9351 5.7686 3.4932 19 14 13.6254 5.5430 2.8944 20 1 14.1115 6.8859 2.4873 21 1 13.8841 5.3411 4.3427 22 1 14.3393 4.5007 2.1139 23 6 9.4918 3.7141 0.3016 24 6 8.1542 3.5446 0.0971 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 0.5489 2.1252 -1.3969 31 1 1.9990 3.1541 -1.3075 32 1 2.0699 1.5876 -2.1491 33 1 3.8570 0.8800 1.0114 34 1 4.0029 0.9836 -0.7596 35 1 5.2882 5.0032 0.4117 36 1 6.9685 6.1362 1.9452 37 1 9.3598 6.4556 2.3349 38 1 11.2538 6.0915 4.3504 39 1 10.1996 3.0408 -0.1591 40 1 7.8028 2.7356 -0.5261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194801498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:05 Heat of formation + Delta-G solvation = -95.722826 kcal Electronic energy + Delta-G solvation = -20636.474018 eV Core-core repulsion = 17414.704823 eV Total energy + Delta-G solvation = -3221.769195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.77875 -39.76865 -38.27551 -36.71872 -36.19795 -34.76418 -31.55410 -31.19615 -30.62533 -28.05508 -26.84039 -24.63088 -23.48973 -22.84671 -21.84536 -21.03164 -19.76059 -19.23330 -18.27452 -17.67028 -17.21895 -16.93769 -16.10908 -15.75664 -15.62968 -15.08605 -14.80937 -14.55902 -14.47413 -14.04312 -13.69909 -13.62929 -13.27853 -13.11692 -12.89917 -12.87322 -12.79693 -12.53564 -12.50852 -11.97626 -11.84730 -11.68174 -11.57655 -11.46219 -11.43499 -11.32831 -11.14983 -10.76833 -9.50021 -8.79891 -8.51667 -6.34721 0.73472 1.10515 1.18499 1.40962 1.46599 1.54969 1.84179 2.24636 2.78847 3.22385 3.65614 3.77888 3.81931 4.03348 4.30269 4.31911 4.38186 4.47385 4.54313 4.64615 4.71458 4.81045 4.88089 5.04931 5.05759 5.08804 5.12916 5.16172 5.19447 5.27287 5.35841 5.38382 5.46015 5.51641 5.68468 5.87519 5.97665 6.10758 6.35479 6.54489 6.66079 6.95474 6.97589 7.37828 8.41262 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.052508 B = 0.002835 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.124153 B = 9875.487253 C = 9966.101252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.084 4.084 4 H 0.084 0.916 5 C -0.147 4.147 6 C 0.084 3.916 7 O -0.362 6.362 8 C 0.638 3.362 9 O -0.598 6.598 10 N -0.620 5.620 11 C 0.026 3.974 12 C -0.111 4.111 13 C -0.159 4.159 14 C 0.070 3.930 15 C -0.494 4.494 16 H 0.075 0.925 17 C 0.027 3.973 18 N -0.839 5.839 19 Si 0.989 3.011 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.263 1.263 23 C -0.219 4.219 24 C -0.094 4.094 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.422 0.578 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.286 0.714 39 H 0.099 0.901 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.270 -4.684 -4.638 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.103 4.103 4 H 0.102 0.898 5 C -0.204 4.204 6 C 0.009 3.991 7 O -0.276 6.276 8 C 0.392 3.608 9 O -0.489 6.489 10 N -0.272 5.272 11 C -0.067 4.067 12 C -0.131 4.131 13 C -0.179 4.179 14 C 0.068 3.932 15 C -0.525 4.525 16 H 0.093 0.907 17 C -0.185 4.185 18 N -0.467 5.467 19 Si 0.810 3.190 20 H -0.184 1.184 21 H -0.195 1.195 22 H -0.187 1.187 23 C -0.239 4.239 24 C -0.114 4.114 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.260 0.740 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.046 -5.125 -4.405 18.337 hybrid contribution 0.784 0.158 0.282 0.848 sum -16.262 -4.967 -4.123 17.497 Atomic orbital electron populations 1.21781 0.93978 1.02420 1.02478 1.21506 0.97342 0.93826 1.02760 1.21252 0.90045 0.98496 1.00479 0.89757 1.21866 1.02386 1.00336 0.95809 1.23329 0.95810 0.77834 1.02096 1.86208 1.20811 1.34455 1.86133 1.18288 0.81523 0.84327 0.76675 1.90955 1.59932 1.41112 1.56881 1.41395 1.07185 1.05541 1.73081 1.17090 0.80497 1.02698 1.06370 1.20518 0.96203 0.98517 0.97886 1.21182 0.91825 1.01110 1.03767 1.18074 0.94575 0.89822 0.90772 1.19742 0.92767 1.40536 0.99428 0.90714 1.26758 1.04938 0.91695 0.95107 1.69819 1.37796 1.33412 1.05654 0.85089 0.76064 0.79703 0.78128 1.18377 1.19456 1.18659 1.20928 0.94598 1.00385 1.07982 1.20528 0.92746 0.98817 0.99289 0.91796 0.92441 0.91764 0.91256 0.91617 0.90455 0.93038 0.92646 0.91877 0.91610 0.74016 0.85478 0.85967 0.90378 0.88239 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.67 71.98 0.70 -0.89 16 2 C -0.12 -1.58 5.40 30.59 0.17 -1.42 16 3 C -0.08 -1.43 2.63 -10.79 -0.03 -1.46 16 4 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 5 C -0.15 -2.29 8.85 71.98 0.64 -1.66 16 6 C 0.08 2.04 4.85 71.98 0.35 2.39 16 7 O -0.36 -10.70 9.81 -55.56 -0.55 -11.24 16 8 C 0.64 23.75 8.58 129.79 1.11 24.87 16 9 O -0.60 -26.66 13.55 19.82 0.27 -26.40 16 10 N -0.62 -22.30 5.31 -429.07 -2.28 -24.58 16 11 C 0.03 1.15 6.31 38.56 0.24 1.39 16 12 C -0.11 -4.99 9.90 22.13 0.22 -4.77 16 13 C -0.16 -8.25 8.62 22.48 0.19 -8.06 16 14 C 0.07 3.85 5.55 -21.27 -0.12 3.73 16 15 C -0.49 -26.97 9.02 23.39 0.21 -26.76 16 16 H 0.07 3.93 7.85 -2.91 -0.02 3.91 16 17 C 0.03 1.39 5.42 85.24 0.46 1.85 16 18 N -0.84 -44.01 10.60 21.82 0.23 -43.78 16 19 Si 0.99 38.87 29.56 68.60 2.03 40.90 16 20 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 21 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 23 C -0.22 -11.40 9.74 22.48 0.22 -11.19 16 24 C -0.09 -4.57 8.61 22.13 0.19 -4.38 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.61 6.56 -2.39 -0.02 0.60 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.08 0.93 6.56 -2.39 -0.02 0.91 16 31 H 0.05 0.93 7.82 -2.38 -0.02 0.91 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.42 11.81 8.92 -92.71 -0.83 10.98 16 36 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 37 H 0.12 6.58 6.13 -2.91 -0.02 6.56 16 38 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 39 H 0.10 4.96 8.06 -2.91 -0.02 4.93 16 40 H 0.11 5.26 6.22 -2.91 -0.02 5.25 16 Total: -1.00 -63.84 332.91 4.47 -59.37 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.21 Total: 32.09 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 4.55 Total: -26.35 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -2.05 Total: -68.36 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -0.28 Total: -37.64 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -63.84 4.47 -59.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194801498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.357 kcal (2) G-P(sol) polarization free energy of solvation -63.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds