Wall clock time and date at job start Mon Mar 30 2020 02:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47495 * 2 1 4 4 H 1.08996 * 109.46764 * 304.99863 * 3 2 1 5 5 C 1.53000 * 109.46872 * 64.99775 * 3 2 1 6 6 C 1.53002 * 109.47170 * 184.99486 * 3 2 1 7 7 O 1.45204 * 109.46739 * 175.00073 * 6 3 2 8 8 C 1.34644 * 116.99687 * 180.02562 * 7 6 3 9 9 O 1.21515 * 120.00378 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00118 * 180.02562 * 8 7 6 11 11 C 1.39964 * 120.00115 * 174.85048 * 10 8 7 12 12 C 1.39285 * 119.94685 * 145.77115 * 11 10 8 13 13 C 1.38491 * 120.42948 * 179.97438 * 12 11 10 14 14 C 1.37681 * 120.31690 * 359.97438 * 13 12 11 15 15 C 1.40741 * 119.88644 * 0.02562 * 14 13 12 16 16 C 1.41413 * 120.20963 * 179.97438 * 15 14 13 17 17 H 1.07992 * 119.99850 * 205.18061 * 16 15 14 18 18 C 1.39934 * 119.99611 * 25.17724 * 16 15 14 19 19 N 1.30827 * 120.00531 * 16.78621 * 18 16 15 20 20 Si 1.86805 * 119.99591 * 196.78550 * 18 16 15 21 21 H 1.48494 * 109.46912 * 90.00098 * 20 18 16 22 22 H 1.48505 * 109.47034 * 210.00350 * 20 18 16 23 23 H 1.48498 * 109.47172 * 330.00037 * 20 18 16 24 24 C 1.38234 * 119.94406 * 325.48323 * 11 10 8 25 25 H 1.08996 * 109.47116 * 300.00169 * 1 2 3 26 26 H 1.09010 * 109.46580 * 59.99998 * 1 2 3 27 27 H 1.08998 * 109.47133 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47556 * 239.99950 * 2 1 3 29 29 H 1.09001 * 109.47115 * 120.00268 * 2 1 3 30 30 H 1.09000 * 109.47107 * 299.99819 * 5 3 2 31 31 H 1.08998 * 109.47193 * 180.02562 * 5 3 2 32 32 H 1.08996 * 109.47354 * 60.00450 * 5 3 2 33 33 H 1.08990 * 109.47358 * 294.99979 * 6 3 2 34 34 H 1.09006 * 109.47037 * 55.00213 * 6 3 2 35 35 H 0.96997 * 119.99702 * 354.84044 * 10 8 7 36 36 H 1.08003 * 119.78276 * 359.94538 * 12 11 10 37 37 H 1.08000 * 119.84068 * 180.02562 * 13 12 11 38 38 H 1.08004 * 120.05365 * 179.97438 * 14 13 12 39 39 H 0.96998 * 119.99884 * 179.97438 * 19 18 16 40 40 H 1.07994 * 120.16022 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4442 -0.1256 7 8 4.0391 2.8115 -0.2446 8 6 5.3683 2.9891 -0.3649 9 8 6.1118 2.0280 -0.3699 10 7 5.8744 4.2330 -0.4788 11 6 7.2606 4.4258 -0.4954 12 6 7.8119 5.4436 -1.2702 13 6 9.1821 5.6435 -1.2936 14 6 10.0148 4.8378 -0.5499 15 6 9.4721 3.8055 0.2377 16 6 10.3211 2.9735 1.0038 17 1 10.0031 1.9765 1.2702 18 6 11.5733 3.4424 1.4165 19 7 11.8330 4.7243 1.3906 20 14 12.8742 2.2376 2.0046 21 1 13.6969 1.7950 0.8503 22 1 13.7452 2.9005 3.0082 23 1 12.2145 1.0596 2.6229 24 6 8.0799 3.6096 0.2619 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.5489 2.1253 1.3968 31 1 1.9982 3.1543 1.3072 32 1 2.0698 1.5875 2.1492 33 1 4.0029 0.9835 0.7597 34 1 3.8572 0.8799 -1.0112 35 1 5.2780 4.9947 -0.5495 36 1 7.1666 6.0806 -1.8569 37 1 9.5993 6.4358 -1.8974 38 1 11.0828 4.9973 -0.5716 39 1 12.7009 5.0492 1.6771 40 1 7.6530 2.8229 0.8663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194803251.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:08 Heat of formation + Delta-G solvation = -98.908966 kcal Electronic energy + Delta-G solvation = -20810.402879 eV Core-core repulsion = 17588.495523 eV Total energy + Delta-G solvation = -3221.907356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.82830 -39.71393 -38.26459 -36.72115 -36.27379 -34.91015 -31.78429 -31.17421 -29.97701 -27.91574 -27.26987 -24.83792 -23.48922 -22.81485 -21.84581 -21.04734 -19.94057 -19.29006 -17.87487 -17.71573 -17.25005 -16.51391 -16.44544 -16.08396 -15.68463 -15.11851 -14.84774 -14.69132 -14.52307 -14.07889 -13.73295 -13.57200 -13.17705 -12.97725 -12.96383 -12.89993 -12.80077 -12.56350 -12.20081 -12.13244 -11.91101 -11.72145 -11.62090 -11.59504 -11.47009 -11.36557 -11.07372 -10.90810 -9.42525 -8.83387 -8.63386 -6.38622 0.76888 0.96575 1.13783 1.36832 1.48961 1.50168 1.81257 2.21022 2.71587 3.13541 3.70024 3.75530 3.79770 4.01403 4.28901 4.30662 4.44431 4.51022 4.60776 4.63103 4.69882 4.79646 4.87745 5.03138 5.04274 5.08518 5.08849 5.13566 5.18688 5.19311 5.29934 5.33331 5.44799 5.50765 5.68862 5.81238 6.04833 6.07475 6.30716 6.46688 6.65729 6.91657 6.97617 7.30191 8.32240 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.003513 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.420680 B = 7968.988964 C = 8839.959657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.082 4.082 4 H 0.089 0.911 5 C -0.148 4.148 6 C 0.082 3.918 7 O -0.359 6.359 8 C 0.642 3.358 9 O -0.591 6.591 10 N -0.633 5.633 11 C 0.169 3.831 12 C -0.245 4.245 13 C -0.088 4.088 14 C -0.195 4.195 15 C 0.091 3.909 16 C -0.502 4.502 17 H 0.063 0.937 18 C 0.039 3.961 19 N -0.820 5.820 20 Si 0.982 3.018 21 H -0.260 1.260 22 H -0.261 1.261 23 H -0.265 1.265 24 C -0.237 4.237 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.426 0.574 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.290 0.710 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.333 -3.025 -2.175 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.101 4.101 4 H 0.107 0.893 5 C -0.205 4.205 6 C 0.008 3.992 7 O -0.273 6.273 8 C 0.396 3.604 9 O -0.481 6.481 10 N -0.286 5.286 11 C 0.077 3.923 12 C -0.266 4.266 13 C -0.106 4.106 14 C -0.215 4.215 15 C 0.088 3.912 16 C -0.531 4.531 17 H 0.081 0.919 18 C -0.177 4.177 19 N -0.446 5.446 20 Si 0.803 3.197 21 H -0.184 1.184 22 H -0.186 1.186 23 H -0.189 1.189 24 C -0.259 4.259 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.264 0.736 36 H 0.153 0.847 37 H 0.146 0.854 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.937 -3.381 -2.077 17.395 hybrid contribution 0.610 -0.300 0.402 0.789 sum -16.327 -3.680 -1.675 16.820 Atomic orbital electron populations 1.21779 0.93837 1.02449 1.02533 1.21512 0.97444 0.93777 1.02750 1.21252 0.89776 0.98567 1.00495 0.89304 1.21877 1.02471 1.00304 0.95880 1.23372 0.95977 0.77738 1.02113 1.86209 1.20624 1.34566 1.85933 1.18256 0.81635 0.84270 0.76275 1.91029 1.60109 1.41004 1.55916 1.41842 1.05928 1.06335 1.74479 1.17312 0.79916 0.97949 0.97157 1.20445 0.95252 1.03949 1.06937 1.20850 0.92981 0.98531 0.98269 1.21361 0.99457 1.00039 1.00597 1.17807 0.91005 0.92070 0.90321 1.19746 1.01251 1.00788 1.31319 0.91862 1.26692 1.00363 0.97225 0.93386 1.69844 1.23873 1.15266 1.35600 0.85212 0.77151 0.78471 0.78893 1.18409 1.18562 1.18940 1.20947 0.93551 1.04993 1.06410 0.91853 0.92211 0.91787 0.91420 0.91530 0.90254 0.93096 0.92951 0.92108 0.91464 0.73579 0.84667 0.85356 0.87464 0.89891 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.67 71.98 0.70 -0.95 16 2 C -0.12 -1.68 5.40 30.59 0.17 -1.52 16 3 C -0.08 -1.47 2.63 -10.79 -0.03 -1.50 16 4 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 5 C -0.15 -2.53 8.85 71.98 0.64 -1.90 16 6 C 0.08 2.13 4.85 71.98 0.35 2.48 16 7 O -0.36 -11.08 9.81 -55.53 -0.54 -11.63 16 8 C 0.64 25.18 8.48 129.79 1.10 26.28 16 9 O -0.59 -28.36 13.89 19.79 0.27 -28.08 16 10 N -0.63 -23.57 5.34 -429.60 -2.30 -25.87 16 11 C 0.17 7.73 6.25 38.09 0.24 7.97 16 12 C -0.24 -10.25 9.97 22.58 0.23 -10.02 16 13 C -0.09 -3.95 10.02 22.20 0.22 -3.72 16 14 C -0.19 -10.41 8.69 22.75 0.20 -10.21 16 15 C 0.09 5.23 5.57 -21.31 -0.12 5.12 16 16 C -0.50 -29.10 9.05 23.46 0.21 -28.89 16 17 H 0.06 3.70 7.90 -2.91 -0.02 3.67 16 18 C 0.04 2.02 5.16 85.25 0.44 2.46 16 19 N -0.82 -43.50 10.94 21.82 0.24 -43.26 16 20 Si 0.98 39.92 29.59 68.60 2.03 41.95 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 22 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 24 C -0.24 -12.96 8.39 22.85 0.19 -12.77 16 25 H 0.06 0.65 6.56 -2.39 -0.02 0.63 16 26 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.03 6.57 -2.39 -0.02 1.02 16 31 H 0.05 0.99 7.82 -2.39 -0.02 0.98 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.43 12.04 8.93 -92.71 -0.83 11.22 16 36 H 0.14 4.50 8.06 -2.91 -0.02 4.47 16 37 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 38 H 0.11 5.91 6.17 -2.91 -0.02 5.89 16 39 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 40 H 0.08 4.86 6.48 -2.91 -0.02 4.84 16 Total: -1.00 -67.76 333.82 4.44 -63.32 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.21 Total: 30.74 kcal Atomic # 6 Polarization: -31.70 SS G_CDS: 4.53 Total: -27.17 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -2.06 Total: -69.13 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -0.27 Total: -39.71 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -67.76 4.44 -63.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194803251.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.586 kcal (2) G-P(sol) polarization free energy of solvation -67.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds