Wall clock time and date at job start Mon Mar 30 2020 02:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47176 * 2 1 4 4 H 1.09001 * 109.46966 * 55.00188 * 3 2 1 5 5 C 1.53001 * 109.47424 * 295.00169 * 3 2 1 6 6 C 1.52997 * 109.47188 * 174.99974 * 3 2 1 7 7 O 1.45202 * 109.47461 * 185.00057 * 6 3 2 8 8 C 1.34642 * 117.00130 * 179.97438 * 7 6 3 9 9 O 1.21508 * 120.00559 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99652 * 180.02562 * 8 7 6 11 11 C 1.39973 * 119.99780 * 174.85032 * 10 8 7 12 12 C 1.39281 * 119.94600 * 145.76662 * 11 10 8 13 13 C 1.38490 * 120.42946 * 179.97438 * 12 11 10 14 14 C 1.37676 * 120.31945 * 0.02562 * 13 12 11 15 15 C 1.40746 * 119.88575 * 359.97438 * 14 13 12 16 16 C 1.41407 * 120.20859 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99500 * 205.17581 * 16 15 14 18 18 C 1.39923 * 120.00118 * 25.18039 * 16 15 14 19 19 N 1.30830 * 120.00413 * 16.78716 * 18 16 15 20 20 Si 1.86807 * 119.99999 * 196.78410 * 18 16 15 21 21 H 1.48496 * 109.46885 * 90.00118 * 20 18 16 22 22 H 1.48492 * 109.47171 * 210.00167 * 20 18 16 23 23 H 1.48500 * 109.46860 * 330.00186 * 20 18 16 24 24 C 1.38232 * 119.94615 * 325.49428 * 11 10 8 25 25 H 1.09003 * 109.47116 * 299.99719 * 1 2 3 26 26 H 1.09005 * 109.47166 * 59.99797 * 1 2 3 27 27 H 1.09000 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47116 * 240.00281 * 2 1 3 29 29 H 1.09005 * 109.47166 * 120.00203 * 2 1 3 30 30 H 1.09000 * 109.47049 * 59.99423 * 5 3 2 31 31 H 1.09000 * 109.47202 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.47065 * 299.99959 * 5 3 2 33 33 H 1.09000 * 109.47527 * 305.00247 * 6 3 2 34 34 H 1.09003 * 109.46875 * 65.00181 * 6 3 2 35 35 H 0.96993 * 120.00253 * 354.84461 * 10 8 7 36 36 H 1.08010 * 119.78365 * 359.95965 * 12 11 10 37 37 H 1.08000 * 119.83643 * 180.02562 * 13 12 11 38 38 H 1.08001 * 120.05546 * 179.97438 * 14 13 12 39 39 H 0.96993 * 120.00406 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.15911 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 8 4.0390 2.8115 0.2448 8 6 5.3682 2.9891 0.3652 9 8 6.1117 2.0281 0.3702 10 7 5.8742 4.2331 0.4802 11 6 7.2425 4.4133 0.7134 12 6 7.9035 5.5083 0.1621 13 6 9.2570 5.6966 0.3868 14 6 9.9645 4.8021 1.1579 15 6 9.3100 3.6909 1.7215 16 6 10.0302 2.7676 2.5142 17 1 9.6821 1.7495 2.6079 18 6 11.1938 3.1729 3.1772 19 7 11.4425 4.4467 3.3428 20 14 12.3923 1.8954 3.8262 21 1 13.3964 1.5813 2.7782 22 1 13.0817 2.4289 5.0283 23 1 11.6514 0.6602 4.1878 24 6 7.9345 3.5072 1.4951 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.5489 2.1252 -1.3969 31 1 1.9982 3.1544 -1.3071 32 1 2.0698 1.5876 -2.1492 33 1 3.8571 0.8799 1.0113 34 1 4.0029 0.9835 -0.7597 35 1 5.2901 5.0034 0.4013 36 1 7.3569 6.2151 -0.4448 37 1 9.7598 6.5493 -0.0451 38 1 11.0200 4.9529 1.3300 39 1 12.2489 4.7276 3.8027 40 1 7.4219 2.6600 1.9263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194803252.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:11 Heat of formation + Delta-G solvation = -81.722165 kcal Electronic energy + Delta-G solvation = -20797.601503 eV Core-core repulsion = 17576.439423 eV Total energy + Delta-G solvation = -3221.162081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27606 -38.10757 -36.93928 -35.50372 -34.48718 -33.05886 -30.37243 -29.83785 -28.26820 -26.91545 -25.31319 -23.84898 -21.99044 -20.94319 -20.33273 -20.01940 -18.31921 -17.51894 -16.45785 -16.17428 -15.51297 -15.16298 -14.78128 -14.72835 -14.51675 -13.78726 -13.73609 -13.08036 -12.93091 -12.74401 -12.34954 -12.17399 -12.15394 -11.84579 -11.66459 -11.24700 -11.13946 -11.07649 -10.95133 -10.91809 -10.80207 -10.47254 -10.36547 -10.31077 -9.79059 -9.58364 -9.16535 -9.07156 -7.46515 -6.95870 -6.71945 -4.34307 2.42160 2.72957 2.87220 3.09970 3.14831 3.21029 3.49856 3.96726 4.37025 4.59719 4.63625 4.64546 4.91722 5.03364 5.22428 5.25688 5.41498 5.47697 5.55661 5.69830 5.71615 5.75897 5.79069 5.85297 6.09370 6.16323 6.22951 6.38013 6.49598 6.72854 7.01656 7.05196 7.06873 7.24839 7.53607 7.70634 7.94917 8.08393 8.13889 8.26249 8.64042 8.81935 8.94287 8.97802 10.21600 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024744 B = 0.003501 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.319775 B = 7994.697187 C = 8972.215831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.092 4.092 4 H 0.081 0.919 5 C -0.148 4.148 6 C 0.091 3.909 7 O -0.375 6.375 8 C 0.640 3.360 9 O -0.550 6.550 10 N -0.645 5.645 11 C 0.163 3.837 12 C -0.258 4.258 13 C -0.091 4.091 14 C -0.171 4.171 15 C 0.121 3.879 16 C -0.458 4.458 17 H 0.079 0.921 18 C 0.076 3.924 19 N -0.795 5.795 20 Si 0.910 3.090 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.211 4.211 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.405 0.595 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.280 0.720 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.464 -3.292 -5.105 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.110 4.110 4 H 0.100 0.900 5 C -0.205 4.205 6 C 0.016 3.984 7 O -0.290 6.290 8 C 0.393 3.607 9 O -0.437 6.437 10 N -0.295 5.295 11 C 0.073 3.927 12 C -0.279 4.279 13 C -0.110 4.110 14 C -0.190 4.190 15 C 0.118 3.882 16 C -0.487 4.487 17 H 0.097 0.903 18 C -0.142 4.142 19 N -0.420 5.420 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.232 4.232 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.239 0.761 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.091 0.909 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.024 -3.696 -4.978 16.253 hybrid contribution 0.317 -0.167 0.316 0.477 sum -14.707 -3.863 -4.662 15.905 Atomic orbital electron populations 1.21792 0.95261 1.01709 1.02100 1.21499 0.96318 0.95163 1.02639 1.21229 0.92759 0.97129 0.99933 0.90017 1.21866 1.01137 1.01209 0.96297 1.22993 0.93637 0.79195 1.02572 1.86169 1.23185 1.32859 1.86748 1.18129 0.80740 0.84787 0.77051 1.91042 1.58701 1.39654 1.54290 1.42066 1.08797 1.05036 1.73607 1.17255 0.79245 0.97890 0.98325 1.20005 0.95313 1.01758 1.10874 1.20456 0.93142 0.98390 0.99003 1.21374 1.00086 0.97237 1.00328 1.17476 0.89784 0.91706 0.89279 1.19594 1.06256 0.97949 1.24927 0.90303 1.25904 0.97959 0.95826 0.94492 1.69821 1.24409 1.16044 1.31761 0.86289 0.80283 0.81440 0.78583 1.19252 1.20349 1.18594 1.21001 0.94670 1.02138 1.05394 0.92606 0.92339 0.92616 0.91517 0.91500 0.92341 0.91900 0.92688 0.91197 0.91257 0.76091 0.89033 0.88804 0.86186 0.90902 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.67 37.16 0.36 -0.66 16 2 C -0.12 -0.95 5.40 -26.74 -0.14 -1.09 16 3 C -0.09 -0.89 2.63 -90.62 -0.24 -1.13 16 4 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 5 C -0.15 -1.33 8.85 37.16 0.33 -1.01 16 6 C 0.09 1.19 4.85 37.16 0.18 1.37 16 7 O -0.37 -5.91 9.81 -40.33 -0.40 -6.31 16 8 C 0.64 12.58 8.48 54.06 0.46 13.04 16 9 O -0.55 -12.82 13.89 -19.28 -0.27 -13.09 16 10 N -0.64 -12.38 5.35 -14.31 -0.08 -12.45 16 11 C 0.16 3.79 6.25 -83.75 -0.52 3.27 16 12 C -0.26 -5.73 9.97 -39.10 -0.39 -6.12 16 13 C -0.09 -2.12 10.02 -39.69 -0.40 -2.52 16 14 C -0.17 -4.48 8.69 -38.84 -0.34 -4.82 16 15 C 0.12 3.34 5.57 -106.85 -0.59 2.74 16 16 C -0.46 -12.62 9.05 -37.75 -0.34 -12.96 16 17 H 0.08 2.15 7.90 -52.48 -0.41 1.73 16 18 C 0.08 1.94 5.16 -17.35 -0.09 1.85 16 19 N -0.79 -20.70 10.94 55.55 0.61 -20.09 16 20 Si 0.91 19.13 29.59 -169.99 -5.03 14.10 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 24 C -0.21 -5.54 8.39 -38.69 -0.32 -5.87 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.37 6.57 -51.93 -0.34 0.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 31 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.40 6.23 8.93 -40.82 -0.36 5.87 16 36 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 38 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 39 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 40 H 0.11 2.89 6.48 -52.48 -0.34 2.55 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -30.14 333.82 -8.08 -38.22 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.89 Total: 8.49 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -2.06 Total: -13.91 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.53 Total: -32.54 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.66 Total: -19.40 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.14 -8.08 -38.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194803252.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.500 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds