Wall clock time and date at job start Mon Mar 30 2020 02:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47176 * 2 1 4 4 H 1.09001 * 109.46966 * 55.00188 * 3 2 1 5 5 C 1.53001 * 109.47424 * 295.00169 * 3 2 1 6 6 C 1.52997 * 109.47188 * 174.99974 * 3 2 1 7 7 O 1.45202 * 109.47461 * 185.00057 * 6 3 2 8 8 C 1.34642 * 117.00130 * 179.97438 * 7 6 3 9 9 O 1.21508 * 120.00559 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99652 * 180.02562 * 8 7 6 11 11 C 1.39973 * 119.99780 * 174.85032 * 10 8 7 12 12 C 1.39281 * 119.94600 * 145.76662 * 11 10 8 13 13 C 1.38490 * 120.42946 * 179.97438 * 12 11 10 14 14 C 1.37676 * 120.31945 * 0.02562 * 13 12 11 15 15 C 1.40746 * 119.88575 * 359.97438 * 14 13 12 16 16 C 1.41407 * 120.20859 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99500 * 205.17581 * 16 15 14 18 18 C 1.39923 * 120.00118 * 25.18039 * 16 15 14 19 19 N 1.30830 * 120.00413 * 16.78716 * 18 16 15 20 20 Si 1.86807 * 119.99999 * 196.78410 * 18 16 15 21 21 H 1.48496 * 109.46885 * 90.00118 * 20 18 16 22 22 H 1.48492 * 109.47171 * 210.00167 * 20 18 16 23 23 H 1.48500 * 109.46860 * 330.00186 * 20 18 16 24 24 C 1.38232 * 119.94615 * 325.49428 * 11 10 8 25 25 H 1.09003 * 109.47116 * 299.99719 * 1 2 3 26 26 H 1.09005 * 109.47166 * 59.99797 * 1 2 3 27 27 H 1.09000 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47116 * 240.00281 * 2 1 3 29 29 H 1.09005 * 109.47166 * 120.00203 * 2 1 3 30 30 H 1.09000 * 109.47049 * 59.99423 * 5 3 2 31 31 H 1.09000 * 109.47202 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.47065 * 299.99959 * 5 3 2 33 33 H 1.09000 * 109.47527 * 305.00247 * 6 3 2 34 34 H 1.09003 * 109.46875 * 65.00181 * 6 3 2 35 35 H 0.96993 * 120.00253 * 354.84461 * 10 8 7 36 36 H 1.08010 * 119.78365 * 359.95965 * 12 11 10 37 37 H 1.08000 * 119.83643 * 180.02562 * 13 12 11 38 38 H 1.08001 * 120.05546 * 179.97438 * 14 13 12 39 39 H 0.96993 * 120.00406 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.15911 * 0.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 8 4.0390 2.8115 0.2448 8 6 5.3682 2.9891 0.3652 9 8 6.1117 2.0281 0.3702 10 7 5.8742 4.2331 0.4802 11 6 7.2425 4.4133 0.7134 12 6 7.9035 5.5083 0.1621 13 6 9.2570 5.6966 0.3868 14 6 9.9645 4.8021 1.1579 15 6 9.3100 3.6909 1.7215 16 6 10.0302 2.7676 2.5142 17 1 9.6821 1.7495 2.6079 18 6 11.1938 3.1729 3.1772 19 7 11.4425 4.4467 3.3428 20 14 12.3923 1.8954 3.8262 21 1 13.3964 1.5813 2.7782 22 1 13.0817 2.4289 5.0283 23 1 11.6514 0.6602 4.1878 24 6 7.9345 3.5072 1.4951 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.5489 2.1252 -1.3969 31 1 1.9982 3.1544 -1.3071 32 1 2.0698 1.5876 -2.1492 33 1 3.8571 0.8799 1.0113 34 1 4.0029 0.9835 -0.7597 35 1 5.2901 5.0034 0.4013 36 1 7.3569 6.2151 -0.4448 37 1 9.7598 6.5493 -0.0451 38 1 11.0200 4.9529 1.3300 39 1 12.2489 4.7276 3.8027 40 1 7.4219 2.6600 1.9263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194803252.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:11 Heat of formation + Delta-G solvation = -98.914655 kcal Electronic energy + Delta-G solvation = -20798.347026 eV Core-core repulsion = 17576.439423 eV Total energy + Delta-G solvation = -3221.907603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.82905 -39.71419 -38.26498 -36.72114 -36.27450 -34.91027 -31.78432 -31.17431 -29.97768 -27.90580 -27.27094 -24.83930 -23.48845 -22.81621 -21.84785 -21.04057 -19.94119 -19.29952 -17.87454 -17.67710 -17.31003 -16.51650 -16.40572 -16.07249 -15.63849 -15.29907 -14.75622 -14.64240 -14.53791 -14.05143 -13.80669 -13.54296 -13.14000 -13.01462 -12.95321 -12.89355 -12.80042 -12.56184 -12.20096 -12.13990 -11.87368 -11.75795 -11.62415 -11.59223 -11.44447 -11.38181 -11.07363 -10.90744 -9.42526 -8.83405 -8.63373 -6.38655 0.76992 0.96577 1.13607 1.36871 1.48983 1.50223 1.81258 2.21045 2.71601 3.13502 3.69827 3.76064 3.79815 4.01597 4.28775 4.30252 4.44436 4.50915 4.60749 4.63533 4.70179 4.80114 4.87722 5.03386 5.05033 5.08515 5.08833 5.13387 5.18575 5.19526 5.29948 5.33475 5.44854 5.50995 5.68851 5.81220 6.04845 6.07450 6.30711 6.46686 6.65709 6.91665 6.97617 7.30166 8.32272 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024744 B = 0.003501 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.319775 B = 7994.697187 C = 8972.215831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.084 4.084 4 H 0.085 0.915 5 C -0.147 4.147 6 C 0.083 3.917 7 O -0.359 6.359 8 C 0.642 3.358 9 O -0.591 6.591 10 N -0.633 5.633 11 C 0.169 3.831 12 C -0.245 4.245 13 C -0.088 4.088 14 C -0.195 4.195 15 C 0.091 3.909 16 C -0.502 4.502 17 H 0.063 0.937 18 C 0.039 3.961 19 N -0.820 5.820 20 Si 0.982 3.018 21 H -0.260 1.260 22 H -0.261 1.261 23 H -0.265 1.265 24 C -0.237 4.237 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.426 0.574 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.290 0.710 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.658 -2.551 -5.895 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.102 4.102 4 H 0.103 0.897 5 C -0.204 4.204 6 C 0.008 3.992 7 O -0.273 6.273 8 C 0.396 3.604 9 O -0.480 6.480 10 N -0.286 5.286 11 C 0.077 3.923 12 C -0.266 4.266 13 C -0.106 4.106 14 C -0.215 4.215 15 C 0.088 3.912 16 C -0.531 4.531 17 H 0.081 0.919 18 C -0.177 4.177 19 N -0.446 5.446 20 Si 0.803 3.197 21 H -0.184 1.184 22 H -0.186 1.186 23 H -0.189 1.189 24 C -0.259 4.259 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.264 0.736 36 H 0.153 0.847 37 H 0.146 0.854 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.279 -2.919 -5.782 17.520 hybrid contribution 0.533 -0.354 0.489 0.805 sum -15.746 -3.273 -5.293 16.931 Atomic orbital electron populations 1.21780 0.93852 1.02446 1.02523 1.21512 0.97437 0.93803 1.02739 1.21254 0.89780 0.98560 1.00614 0.89692 1.21867 1.02456 1.00345 0.95700 1.23368 0.95995 0.77719 1.02096 1.86207 1.20539 1.34567 1.86024 1.18254 0.81654 0.84300 0.76223 1.91027 1.60083 1.41023 1.55918 1.41845 1.07756 1.05900 1.73089 1.17312 0.80838 0.97210 0.96969 1.20444 0.95046 1.01459 1.09630 1.20848 0.93779 0.98413 0.97591 1.21363 0.99860 0.98144 1.02097 1.17805 0.90610 0.92696 0.90080 1.19746 1.08538 0.97609 1.27216 0.91858 1.26690 0.98831 0.98022 0.94116 1.69843 1.25198 1.17536 1.32014 0.85210 0.77669 0.78331 0.78508 1.18410 1.18564 1.18937 1.20950 0.94732 1.02806 1.07437 0.92414 0.91671 0.91788 0.91245 0.91720 0.90342 0.92952 0.92626 0.92008 0.91582 0.73580 0.84669 0.85357 0.87459 0.89889 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.67 71.98 0.70 -0.97 16 2 C -0.12 -1.70 5.40 30.59 0.17 -1.54 16 3 C -0.08 -1.50 2.63 -10.80 -0.03 -1.53 16 4 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 5 C -0.15 -2.36 8.85 71.98 0.64 -1.72 16 6 C 0.08 2.14 4.85 71.98 0.35 2.49 16 7 O -0.36 -11.09 9.81 -55.51 -0.54 -11.64 16 8 C 0.64 25.19 8.48 129.79 1.10 26.29 16 9 O -0.59 -28.36 13.89 19.82 0.28 -28.08 16 10 N -0.63 -23.57 5.35 -429.60 -2.30 -25.87 16 11 C 0.17 7.73 6.25 38.09 0.24 7.97 16 12 C -0.24 -10.25 9.97 22.58 0.23 -10.02 16 13 C -0.09 -3.95 10.02 22.20 0.22 -3.72 16 14 C -0.19 -10.41 8.69 22.75 0.20 -10.22 16 15 C 0.09 5.24 5.57 -21.31 -0.12 5.12 16 16 C -0.50 -29.11 9.05 23.46 0.21 -28.89 16 17 H 0.06 3.70 7.90 -2.91 -0.02 3.68 16 18 C 0.04 2.02 5.16 85.25 0.44 2.46 16 19 N -0.82 -43.50 10.94 21.82 0.24 -43.27 16 20 Si 0.98 39.92 29.59 68.60 2.03 41.95 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 23 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 24 C -0.24 -12.97 8.39 22.85 0.19 -12.78 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.65 6.57 -2.38 -0.02 0.63 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.08 0.96 6.56 -2.39 -0.02 0.94 16 31 H 0.05 0.95 7.82 -2.39 -0.02 0.94 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.43 12.05 8.93 -92.71 -0.83 11.22 16 36 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 38 H 0.11 5.91 6.16 -2.91 -0.02 5.90 16 39 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 40 H 0.08 4.86 6.48 -2.91 -0.02 4.84 16 Total: -1.00 -67.75 333.82 4.44 -63.31 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.21 Total: 30.65 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 4.53 Total: -27.06 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -2.06 Total: -69.13 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.27 Total: -39.72 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -67.75 4.44 -63.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194803252.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.607 kcal (2) G-P(sol) polarization free energy of solvation -67.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds