Wall clock time and date at job start Mon Mar 30 2020 02:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47469 * 2 1 4 4 H 1.09000 * 109.46764 * 305.00192 * 3 2 1 5 5 C 1.53003 * 109.46851 * 64.99542 * 3 2 1 6 6 C 1.52990 * 109.47218 * 184.99918 * 3 2 1 7 7 O 1.45199 * 109.47076 * 175.00038 * 6 3 2 8 8 C 1.34655 * 116.99922 * 179.97438 * 7 6 3 9 9 O 1.21500 * 120.00099 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99531 * 180.02562 * 8 7 6 11 11 C 1.39147 * 119.99286 * 184.91453 * 10 8 7 12 12 C 1.38640 * 120.28955 * 330.99394 * 11 10 8 13 13 C 1.38216 * 120.03658 * 180.28012 * 12 11 10 14 14 C 1.38866 * 120.61446 * 359.69085 * 13 12 11 15 15 C 1.36466 * 120.57893 * 0.02562 * 14 13 12 16 16 C 1.40740 * 119.93916 * 0.02562 * 15 14 13 17 17 C 1.41072 * 120.29773 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99996 * 205.08842 * 17 16 15 19 19 C 1.39953 * 120.00073 * 25.09616 * 17 16 15 20 20 N 1.30858 * 119.99793 * 17.58505 * 19 17 16 21 21 Si 1.86799 * 119.99952 * 197.58577 * 19 17 16 22 22 H 1.48506 * 109.47026 * 265.01640 * 21 19 17 23 23 H 1.48500 * 109.47213 * 25.01381 * 21 19 17 24 24 H 1.48499 * 109.47186 * 145.01584 * 21 19 17 25 25 H 1.09004 * 109.46584 * 60.00191 * 1 2 3 26 26 H 1.09000 * 109.47177 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47355 * 300.00319 * 1 2 3 28 28 H 1.09004 * 109.47070 * 239.99891 * 2 1 3 29 29 H 1.09002 * 109.46779 * 120.00554 * 2 1 3 30 30 H 1.08999 * 109.47678 * 300.00263 * 5 3 2 31 31 H 1.09000 * 109.46905 * 60.00736 * 5 3 2 32 32 H 1.09007 * 109.46854 * 179.97438 * 5 3 2 33 33 H 1.09003 * 109.47222 * 55.00050 * 6 3 2 34 34 H 1.08998 * 109.47325 * 294.99841 * 6 3 2 35 35 H 0.96996 * 120.00696 * 4.90739 * 10 8 7 36 36 H 1.08007 * 119.97897 * 359.97438 * 12 11 10 37 37 H 1.07997 * 119.69483 * 179.71850 * 13 12 11 38 38 H 1.08000 * 119.71220 * 180.02562 * 14 13 12 39 39 H 1.07999 * 120.03006 * 180.02562 * 15 14 13 40 40 H 0.96996 * 119.99917 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4442 -0.1257 7 8 4.0391 2.8114 -0.2447 8 6 5.3685 2.9891 -0.3640 9 8 6.1119 2.0280 -0.3691 10 7 5.8745 4.2331 -0.4779 11 6 7.2358 4.4124 -0.7037 12 6 8.1503 3.4791 -0.2404 13 6 9.5017 3.6653 -0.4626 14 6 9.9577 4.7798 -1.1543 15 6 9.0792 5.7112 -1.6265 16 6 7.6980 5.5459 -1.4128 17 6 6.7831 6.5043 -1.8971 18 1 5.8200 6.6197 -1.4224 19 6 7.1236 7.3055 -2.9929 20 7 8.1109 6.9559 -3.7774 21 14 6.1687 8.8740 -3.3356 22 1 5.0960 8.5946 -4.3239 23 1 5.5625 9.3701 -2.0741 24 1 7.0885 9.9042 -3.8814 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.5490 2.1252 1.3969 31 1 2.0699 1.5875 2.1492 32 1 1.9991 3.1541 1.3075 33 1 3.8571 0.8799 -1.0113 34 1 4.0030 0.9835 0.7597 35 1 5.2898 5.0034 -0.4025 36 1 7.8069 2.6085 0.2989 37 1 10.2096 2.9371 -0.0952 38 1 11.0169 4.9105 -1.3200 39 1 9.4435 6.5743 -2.1637 40 1 8.3471 7.5114 -4.5367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194807818.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:15 Heat of formation + Delta-G solvation = -79.050315 kcal Electronic energy + Delta-G solvation = -21140.805227 eV Core-core repulsion = 17919.759007 eV Total energy + Delta-G solvation = -3221.046221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.12411 -38.10377 -36.87927 -35.34865 -33.87995 -33.67865 -30.31170 -29.65543 -28.44523 -26.88084 -25.27427 -23.73797 -21.94437 -21.03809 -20.22205 -19.79357 -18.08798 -17.27900 -16.52703 -16.19825 -15.75206 -15.17794 -14.91520 -14.62219 -14.16126 -13.69535 -13.54449 -13.16856 -12.77391 -12.57776 -12.30718 -12.26225 -12.08556 -11.83124 -11.70466 -11.39022 -11.15937 -11.05814 -10.97711 -10.84358 -10.71332 -10.55395 -10.22954 -10.18374 -9.75997 -9.51339 -9.23329 -9.02339 -7.43112 -6.99543 -6.78876 -4.38268 2.58794 2.76506 2.91116 3.03375 3.06952 3.20437 3.62968 3.87039 4.52999 4.60643 4.67611 4.73066 5.09602 5.11390 5.29979 5.33602 5.49540 5.56180 5.61344 5.64955 5.77537 5.83028 5.85815 5.93871 6.17345 6.25130 6.32257 6.45890 6.59927 6.79340 6.87566 7.05119 7.15454 7.27128 7.59793 7.71687 7.95182 8.06755 8.10333 8.37770 8.53762 8.77983 8.83520 9.11214 10.11628 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.004420 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.829657 B = 6333.689418 C = 7616.113520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.093 4.093 4 H 0.082 0.918 5 C -0.148 4.148 6 C 0.093 3.907 7 O -0.374 6.374 8 C 0.635 3.365 9 O -0.571 6.571 10 N -0.614 5.614 11 C 0.021 3.979 12 C -0.092 4.092 13 C -0.229 4.229 14 C -0.110 4.110 15 C -0.155 4.155 16 C 0.107 3.893 17 C -0.466 4.466 18 H 0.075 0.925 19 C 0.079 3.921 20 N -0.789 5.789 21 Si 0.907 3.093 22 H -0.271 1.271 23 H -0.260 1.260 24 H -0.275 1.275 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.408 0.592 36 H 0.120 0.880 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 -5.910 5.291 13.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.111 4.111 4 H 0.100 0.900 5 C -0.205 4.205 6 C 0.017 3.983 7 O -0.289 6.289 8 C 0.388 3.612 9 O -0.461 6.461 10 N -0.262 5.262 11 C -0.072 4.072 12 C -0.112 4.112 13 C -0.249 4.249 14 C -0.129 4.129 15 C -0.175 4.175 16 C 0.103 3.897 17 C -0.495 4.495 18 H 0.093 0.907 19 C -0.140 4.140 20 N -0.414 5.414 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.184 1.184 24 H -0.200 1.200 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.244 0.756 36 H 0.138 0.862 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.139 0.861 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.894 -6.364 5.063 13.595 hybrid contribution -0.566 0.929 -0.395 1.157 sum -11.460 -5.436 4.668 13.515 Atomic orbital electron populations 1.21793 0.95316 1.01619 1.02139 1.21494 0.96280 0.95271 1.02500 1.21227 0.92946 0.96988 0.99968 0.89993 1.21862 1.01058 1.01329 0.96233 1.22919 0.93525 0.79566 1.02244 1.86190 1.23412 1.32416 1.86876 1.18169 0.80548 0.84796 0.77653 1.90891 1.58471 1.40267 1.56488 1.41464 1.08643 1.04644 1.71442 1.17495 0.79284 0.99467 1.10924 1.20890 0.92372 0.98532 0.99418 1.20304 0.94407 1.00607 1.09543 1.20487 0.97719 0.95473 0.99200 1.20865 0.92046 1.00316 1.04230 1.17341 0.93039 0.90237 0.89056 1.19274 1.01881 1.16090 1.12285 0.90659 1.25846 0.94881 0.98442 0.94783 1.69837 1.24902 1.35387 1.11245 0.86316 0.79946 0.81056 0.79549 1.19596 1.18353 1.19961 0.92600 0.92690 0.92329 0.91588 0.91603 0.92403 0.92780 0.91790 0.91434 0.91498 0.75626 0.86215 0.89136 0.89319 0.86070 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 37.16 0.36 -0.76 16 2 C -0.12 -1.02 5.40 -26.73 -0.14 -1.17 16 3 C -0.09 -0.99 2.63 -90.62 -0.24 -1.23 16 4 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.15 -1.48 8.85 37.16 0.33 -1.15 16 6 C 0.09 1.30 4.85 37.15 0.18 1.48 16 7 O -0.37 -6.52 9.81 -40.36 -0.40 -6.92 16 8 C 0.63 13.39 8.62 54.06 0.47 13.86 16 9 O -0.57 -13.37 13.20 -19.27 -0.25 -13.62 16 10 N -0.61 -13.39 5.10 -13.87 -0.07 -13.46 16 11 C 0.02 0.52 6.44 -83.16 -0.54 -0.02 16 12 C -0.09 -2.26 8.75 -39.44 -0.35 -2.61 16 13 C -0.23 -5.39 10.04 -39.36 -0.40 -5.78 16 14 C -0.11 -2.61 9.97 -39.99 -0.40 -3.01 16 15 C -0.15 -3.97 8.64 -39.28 -0.34 -4.31 16 16 C 0.11 2.79 5.58 -106.65 -0.60 2.20 16 17 C -0.47 -11.72 8.65 -37.87 -0.33 -12.05 16 18 H 0.08 1.76 6.69 -52.49 -0.35 1.41 16 19 C 0.08 1.91 5.14 -17.32 -0.09 1.82 16 20 N -0.79 -19.92 10.98 55.55 0.61 -19.31 16 21 Si 0.91 17.98 29.59 -169.99 -5.03 12.95 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.73 7.82 -51.92 -0.41 0.32 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.41 8.03 7.45 -40.82 -0.30 7.73 16 36 H 0.12 2.93 5.75 -52.48 -0.30 2.63 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 38 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 39 H 0.12 3.17 6.19 -52.49 -0.32 2.84 16 40 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 LS Contribution 329.79 15.07 4.97 4.97 Total: -1.00 -28.71 329.79 -7.98 -36.69 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -5.73 Total: 11.45 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -2.07 Total: -12.75 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.54 Total: -32.77 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.65 Total: -20.54 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.71 -7.98 -36.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194807818.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.363 kcal (2) G-P(sol) polarization free energy of solvation -28.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds