Wall clock time and date at job start Mon Mar 30 2020 02:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47469 * 2 1 4 4 H 1.09000 * 109.46764 * 305.00192 * 3 2 1 5 5 C 1.53003 * 109.46851 * 64.99542 * 3 2 1 6 6 C 1.52990 * 109.47218 * 184.99918 * 3 2 1 7 7 O 1.45199 * 109.47076 * 175.00038 * 6 3 2 8 8 C 1.34655 * 116.99922 * 179.97438 * 7 6 3 9 9 O 1.21500 * 120.00099 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99531 * 180.02562 * 8 7 6 11 11 C 1.39147 * 119.99286 * 184.91453 * 10 8 7 12 12 C 1.38640 * 120.28955 * 330.99394 * 11 10 8 13 13 C 1.38216 * 120.03658 * 180.28012 * 12 11 10 14 14 C 1.38866 * 120.61446 * 359.69085 * 13 12 11 15 15 C 1.36466 * 120.57893 * 0.02562 * 14 13 12 16 16 C 1.40740 * 119.93916 * 0.02562 * 15 14 13 17 17 C 1.41072 * 120.29773 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99996 * 205.08842 * 17 16 15 19 19 C 1.39953 * 120.00073 * 25.09616 * 17 16 15 20 20 N 1.30858 * 119.99793 * 17.58505 * 19 17 16 21 21 Si 1.86799 * 119.99952 * 197.58577 * 19 17 16 22 22 H 1.48506 * 109.47026 * 265.01640 * 21 19 17 23 23 H 1.48500 * 109.47213 * 25.01381 * 21 19 17 24 24 H 1.48499 * 109.47186 * 145.01584 * 21 19 17 25 25 H 1.09004 * 109.46584 * 60.00191 * 1 2 3 26 26 H 1.09000 * 109.47177 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47355 * 300.00319 * 1 2 3 28 28 H 1.09004 * 109.47070 * 239.99891 * 2 1 3 29 29 H 1.09002 * 109.46779 * 120.00554 * 2 1 3 30 30 H 1.08999 * 109.47678 * 300.00263 * 5 3 2 31 31 H 1.09000 * 109.46905 * 60.00736 * 5 3 2 32 32 H 1.09007 * 109.46854 * 179.97438 * 5 3 2 33 33 H 1.09003 * 109.47222 * 55.00050 * 6 3 2 34 34 H 1.08998 * 109.47325 * 294.99841 * 6 3 2 35 35 H 0.96996 * 120.00696 * 4.90739 * 10 8 7 36 36 H 1.08007 * 119.97897 * 359.97438 * 12 11 10 37 37 H 1.07997 * 119.69483 * 179.71850 * 13 12 11 38 38 H 1.08000 * 119.71220 * 180.02562 * 14 13 12 39 39 H 1.07999 * 120.03006 * 180.02562 * 15 14 13 40 40 H 0.96996 * 119.99917 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4442 -0.1257 7 8 4.0391 2.8114 -0.2447 8 6 5.3685 2.9891 -0.3640 9 8 6.1119 2.0280 -0.3691 10 7 5.8745 4.2331 -0.4779 11 6 7.2358 4.4124 -0.7037 12 6 8.1503 3.4791 -0.2404 13 6 9.5017 3.6653 -0.4626 14 6 9.9577 4.7798 -1.1543 15 6 9.0792 5.7112 -1.6265 16 6 7.6980 5.5459 -1.4128 17 6 6.7831 6.5043 -1.8971 18 1 5.8200 6.6197 -1.4224 19 6 7.1236 7.3055 -2.9929 20 7 8.1109 6.9559 -3.7774 21 14 6.1687 8.8740 -3.3356 22 1 5.0960 8.5946 -4.3239 23 1 5.5625 9.3701 -2.0741 24 1 7.0885 9.9042 -3.8814 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.5490 2.1252 1.3969 31 1 2.0699 1.5875 2.1492 32 1 1.9991 3.1541 1.3075 33 1 3.8571 0.8799 -1.0113 34 1 4.0030 0.9835 0.7597 35 1 5.2898 5.0034 -0.4025 36 1 7.8069 2.6085 0.2989 37 1 10.2096 2.9371 -0.0952 38 1 11.0169 4.9105 -1.3200 39 1 9.4435 6.5743 -2.1637 40 1 8.3471 7.5114 -4.5367 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194807818.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:14 Heat of formation + Delta-G solvation = -94.064511 kcal Electronic energy + Delta-G solvation = -21141.456292 eV Core-core repulsion = 17919.759007 eV Total energy + Delta-G solvation = -3221.697285 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.76471 -39.74986 -38.19469 -36.63069 -35.66818 -35.53008 -31.57874 -31.15558 -30.17766 -27.93720 -27.11328 -24.78009 -23.54010 -22.82334 -21.65720 -21.00322 -19.74389 -19.14401 -18.17542 -17.66452 -17.41022 -16.66563 -16.11247 -15.89640 -15.66761 -14.99274 -14.83027 -14.54941 -14.42901 -14.28433 -13.69745 -13.60497 -13.27234 -13.01808 -12.88990 -12.84635 -12.77079 -12.54183 -12.20142 -12.01387 -11.86665 -11.67694 -11.59339 -11.56629 -11.42192 -11.28095 -11.04799 -10.86188 -9.36134 -8.86188 -8.62157 -6.29844 0.81159 1.04157 1.23408 1.41882 1.51804 1.57568 1.89911 2.21264 2.75317 3.27654 3.68923 3.78629 3.82613 4.04131 4.30671 4.32508 4.49016 4.55334 4.61020 4.64865 4.71847 4.76161 4.81593 5.02034 5.05377 5.07216 5.14171 5.19263 5.19480 5.28041 5.32711 5.41813 5.48303 5.51815 5.72784 5.83953 6.08607 6.18142 6.21368 6.57267 6.65986 6.89884 6.96117 7.40590 8.32208 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.004420 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.829657 B = 6333.689418 C = 7616.113520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.086 4.086 4 H 0.080 0.920 5 C -0.146 4.146 6 C 0.084 3.916 7 O -0.367 6.367 8 C 0.638 3.362 9 O -0.596 6.596 10 N -0.613 5.613 11 C 0.012 3.988 12 C -0.105 4.105 13 C -0.231 4.231 14 C -0.112 4.112 15 C -0.177 4.177 16 C 0.081 3.919 17 C -0.490 4.490 18 H 0.085 0.915 19 C 0.038 3.962 20 N -0.822 5.822 21 Si 0.982 3.018 22 H -0.266 1.266 23 H -0.253 1.253 24 H -0.268 1.268 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.416 0.584 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.766 -5.826 5.528 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.104 4.104 4 H 0.098 0.902 5 C -0.203 4.203 6 C 0.010 3.990 7 O -0.281 6.281 8 C 0.392 3.608 9 O -0.488 6.488 10 N -0.263 5.263 11 C -0.081 4.081 12 C -0.126 4.126 13 C -0.251 4.251 14 C -0.131 4.131 15 C -0.197 4.197 16 C 0.077 3.923 17 C -0.519 4.519 18 H 0.103 0.897 19 C -0.177 4.177 20 N -0.447 5.447 21 Si 0.803 3.197 22 H -0.191 1.191 23 H -0.177 1.177 24 H -0.193 1.193 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.253 0.747 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.408 -6.292 5.313 14.892 hybrid contribution -0.112 0.797 -0.455 0.925 sum -12.520 -5.495 4.858 14.511 Atomic orbital electron populations 1.21785 0.93992 1.02460 1.02419 1.21498 0.97322 0.93595 1.02845 1.21258 0.90139 0.98650 1.00369 0.90152 1.21861 1.02385 1.00229 0.95874 1.23327 0.95793 0.77787 1.02117 1.86224 1.20999 1.34605 1.86230 1.18200 0.81531 0.84136 0.76954 1.90862 1.59503 1.40942 1.57524 1.41375 1.07979 1.05426 1.71491 1.17627 0.80627 0.99237 1.10605 1.21055 0.93052 0.98590 0.99866 1.20625 0.94582 1.00953 1.08926 1.20752 0.98896 0.94950 0.98479 1.20923 0.92575 1.00852 1.05357 1.17672 0.93644 0.91106 0.89867 1.19594 1.02421 1.16851 1.13044 0.89687 1.26729 0.95737 1.01222 0.94057 1.69892 1.26268 1.36724 1.11819 0.85190 0.78444 0.76617 0.79496 1.19124 1.17678 1.19290 0.92615 0.91619 0.91762 0.91599 0.91013 0.90405 0.92381 0.93384 0.91940 0.91322 0.74700 0.86322 0.86535 0.86716 0.87149 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.67 71.98 0.70 -1.15 16 2 C -0.11 -1.78 5.40 30.59 0.17 -1.61 16 3 C -0.09 -1.71 2.63 -10.80 -0.03 -1.74 16 4 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 5 C -0.15 -2.70 8.85 71.98 0.64 -2.06 16 6 C 0.08 2.31 4.85 71.98 0.35 2.66 16 7 O -0.37 -12.67 9.81 -55.64 -0.55 -13.22 16 8 C 0.64 27.00 8.62 129.79 1.12 28.12 16 9 O -0.60 -28.11 13.20 19.84 0.26 -27.85 16 10 N -0.61 -27.01 5.10 -428.21 -2.19 -29.19 16 11 C 0.01 0.61 6.44 38.87 0.25 0.86 16 12 C -0.11 -5.21 8.75 22.36 0.20 -5.01 16 13 C -0.23 -10.75 10.04 22.42 0.22 -10.53 16 14 C -0.11 -5.30 9.97 22.01 0.22 -5.08 16 15 C -0.18 -9.24 8.64 22.47 0.19 -9.04 16 16 C 0.08 4.29 5.58 -21.18 -0.12 4.17 16 17 C -0.49 -24.85 8.65 23.38 0.20 -24.65 16 18 H 0.09 3.98 6.69 -2.91 -0.02 3.96 16 19 C 0.04 1.85 5.14 85.25 0.44 2.28 16 20 N -0.82 -41.79 10.98 21.83 0.24 -41.55 16 21 Si 0.98 36.35 29.59 68.60 2.03 38.38 16 22 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 23 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 24 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 25 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.73 6.56 -2.39 -0.02 0.71 16 28 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.13 6.57 -2.39 -0.02 1.11 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.04 7.82 -2.38 -0.02 1.02 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.42 16.49 7.45 -92.71 -0.69 15.79 16 36 H 0.12 5.84 5.75 -2.91 -0.02 5.82 16 37 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 38 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 39 H 0.11 5.91 6.19 -2.91 -0.02 5.89 16 40 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 Total: -1.00 -61.21 329.79 4.70 -56.51 By element: Atomic # 1 Polarization: 39.33 SS G_CDS: 0.35 Total: 39.68 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 4.54 Total: -22.77 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -1.95 Total: -70.74 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.28 Total: -41.07 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.38 kcal Total: -61.21 4.70 -56.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194807818.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.552 kcal (2) G-P(sol) polarization free energy of solvation -61.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds