Wall clock time and date at job start Mon Mar 30 2020 02:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46904 * 2 1 4 4 H 1.09002 * 109.47369 * 54.99851 * 3 2 1 5 5 C 1.53007 * 109.46949 * 294.99730 * 3 2 1 6 6 C 1.53005 * 109.47194 * 175.00165 * 3 2 1 7 7 O 1.45194 * 109.46994 * 184.99794 * 6 3 2 8 8 C 1.34647 * 116.99823 * 179.97438 * 7 6 3 9 9 O 1.21507 * 120.00008 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00187 * 180.02562 * 8 7 6 11 11 C 1.39144 * 120.00056 * 185.25976 * 10 8 7 12 12 C 1.38640 * 120.28472 * 20.59461 * 11 10 8 13 13 C 1.38225 * 120.03486 * 179.97438 * 12 11 10 14 14 C 1.38858 * 120.61279 * 359.97438 * 13 12 11 15 15 C 1.36461 * 120.57957 * 0.02562 * 14 13 12 16 16 C 1.40735 * 119.94179 * 359.97438 * 15 14 13 17 17 C 1.41082 * 120.29807 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99711 * 212.01141 * 17 16 15 19 19 C 1.39944 * 119.99829 * 32.01683 * 17 16 15 20 20 N 1.30857 * 120.00280 * 14.83437 * 19 17 16 21 21 Si 1.86801 * 119.99609 * 194.83179 * 19 17 16 22 22 H 1.48500 * 109.47216 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47000 * 120.00368 * 21 19 17 24 24 H 1.48501 * 109.47222 * 240.00051 * 21 19 17 25 25 H 1.08998 * 109.46905 * 60.00494 * 1 2 3 26 26 H 1.09001 * 109.47149 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47082 * 300.00156 * 1 2 3 28 28 H 1.09001 * 109.46795 * 240.00199 * 2 1 3 29 29 H 1.09000 * 109.47442 * 120.00031 * 2 1 3 30 30 H 1.08995 * 109.47452 * 299.99970 * 5 3 2 31 31 H 1.09003 * 109.46782 * 60.00420 * 5 3 2 32 32 H 1.09001 * 109.46811 * 180.02562 * 5 3 2 33 33 H 1.09003 * 109.47201 * 64.99769 * 6 3 2 34 34 H 1.08995 * 109.46955 * 305.00166 * 6 3 2 35 35 H 0.96999 * 119.99848 * 5.25553 * 10 8 7 36 36 H 1.08003 * 119.98115 * 0.25261 * 12 11 10 37 37 H 1.07997 * 119.69217 * 179.97438 * 13 12 11 38 38 H 1.08006 * 119.71342 * 179.97438 * 14 13 12 39 39 H 1.08006 * 120.03133 * 180.02562 * 15 14 13 40 40 H 0.96997 * 119.99627 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 8 4.0389 2.8116 0.2446 8 6 5.3682 2.9893 0.3650 9 8 6.1116 2.0282 0.3710 10 7 5.8741 4.2333 0.4800 11 6 7.2522 4.4253 0.4942 12 6 8.0985 3.4560 -0.0217 13 6 9.4666 3.6523 -0.0054 14 6 10.0077 4.8163 0.5243 15 6 9.1979 5.7868 1.0386 16 6 7.8015 5.6118 1.0341 17 6 6.9573 6.6100 1.5644 18 1 6.0256 6.3346 2.0362 19 6 7.3271 7.9570 1.4789 20 7 8.2884 8.3215 0.6693 21 14 6.4485 9.2346 2.5206 22 1 5.4086 8.5699 3.3465 23 1 7.4293 9.9088 3.4088 24 1 5.8094 10.2409 1.6350 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0698 1.5875 -2.1492 31 1 0.5489 2.1252 -1.3970 32 1 1.9989 3.1540 -1.3076 33 1 4.0030 0.9836 -0.7597 34 1 3.8571 0.8801 1.0112 35 1 5.2775 4.9947 0.5527 36 1 7.6884 2.5489 -0.4406 37 1 10.1208 2.8934 -0.4083 38 1 11.0789 4.9545 0.5300 39 1 9.6282 6.6890 1.4479 40 1 8.5444 9.2552 0.6099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194807822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:18 Heat of formation + Delta-G solvation = -79.221439 kcal Electronic energy + Delta-G solvation = -21117.566849 eV Core-core repulsion = 17896.513208 eV Total energy + Delta-G solvation = -3221.053641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18581 -38.13324 -36.89632 -35.38408 -33.90569 -33.62998 -30.32752 -29.66603 -28.47218 -26.89301 -25.25181 -23.75793 -21.98126 -21.06437 -20.24528 -19.81198 -18.08152 -17.24386 -16.53818 -16.30390 -15.66206 -15.21243 -14.95081 -14.65779 -14.17600 -13.73329 -13.51438 -13.13625 -12.76826 -12.62701 -12.31858 -12.26718 -12.08838 -11.87737 -11.64818 -11.47352 -11.20259 -11.04529 -10.99015 -10.84651 -10.72731 -10.51473 -10.31298 -10.24626 -9.76090 -9.54476 -9.25147 -9.01709 -7.39659 -6.98249 -6.70067 -4.41386 2.60220 2.70326 2.88326 3.05757 3.10245 3.18042 3.60754 3.90208 4.51298 4.62200 4.65986 4.71321 5.08278 5.09774 5.28351 5.32100 5.48553 5.54608 5.60722 5.62339 5.76433 5.81735 5.84438 5.93127 6.15226 6.25152 6.29169 6.42189 6.57290 6.78110 6.85600 7.04023 7.11440 7.24711 7.62180 7.66806 7.92065 8.06636 8.09254 8.39143 8.53004 8.78977 8.83495 9.07359 10.17442 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018266 B = 0.004312 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.556591 B = 6491.554407 C = 7771.017621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.092 4.092 4 H 0.081 0.919 5 C -0.148 4.148 6 C 0.092 3.908 7 O -0.374 6.374 8 C 0.633 3.367 9 O -0.570 6.570 10 N -0.612 5.612 11 C 0.034 3.966 12 C -0.106 4.106 13 C -0.217 4.217 14 C -0.117 4.117 15 C -0.141 4.141 16 C 0.105 3.895 17 C -0.477 4.477 18 H 0.077 0.923 19 C 0.080 3.920 20 N -0.796 5.796 21 Si 0.907 3.093 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.275 1.275 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.412 0.588 36 H 0.126 0.874 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.548 -8.052 -1.327 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.111 4.111 4 H 0.100 0.900 5 C -0.205 4.205 6 C 0.017 3.983 7 O -0.288 6.288 8 C 0.386 3.614 9 O -0.461 6.461 10 N -0.261 5.261 11 C -0.059 4.059 12 C -0.126 4.126 13 C -0.237 4.237 14 C -0.136 4.136 15 C -0.161 4.161 16 C 0.101 3.899 17 C -0.507 4.507 18 H 0.095 0.905 19 C -0.138 4.138 20 N -0.422 5.422 21 Si 0.731 3.269 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.200 1.200 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.249 0.751 36 H 0.143 0.857 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.133 0.867 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.173 -8.359 -1.440 14.027 hybrid contribution -0.494 0.984 0.455 1.192 sum -11.667 -7.375 -0.984 13.837 Atomic orbital electron populations 1.21792 0.95305 1.01627 1.02152 1.21494 0.96294 0.95257 1.02493 1.21231 0.92892 0.96987 0.99994 0.90023 1.21867 1.01070 1.01398 0.96213 1.22930 0.93582 0.79500 1.02260 1.86193 1.23444 1.32447 1.86753 1.18184 0.80579 0.84755 0.77849 1.90870 1.58361 1.40295 1.56542 1.41573 1.07120 1.05314 1.72048 1.17675 0.79120 1.00195 1.08955 1.21020 0.93055 0.98821 0.99668 1.20339 0.94088 0.98791 1.10481 1.20481 0.97789 0.94746 1.00568 1.20751 0.92547 0.98763 1.04062 1.17283 0.92550 0.90227 0.89840 1.19301 1.06061 0.90493 1.34860 0.90506 1.25812 0.94563 0.99680 0.93726 1.69819 1.24999 1.18902 1.28468 0.86288 0.80103 0.80115 0.80369 1.18475 1.19747 1.20016 0.92308 0.92685 0.92608 0.91579 0.91616 0.92744 0.92392 0.91730 0.91433 0.91451 0.75147 0.85669 0.89017 0.89235 0.86701 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.67 37.16 0.36 -0.73 16 2 C -0.12 -0.99 5.40 -26.73 -0.14 -1.13 16 3 C -0.09 -0.97 2.63 -90.61 -0.24 -1.20 16 4 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.15 -1.50 8.85 37.16 0.33 -1.17 16 6 C 0.09 1.26 4.85 37.16 0.18 1.44 16 7 O -0.37 -6.39 9.81 -40.34 -0.40 -6.79 16 8 C 0.63 13.11 8.59 54.06 0.46 13.57 16 9 O -0.57 -13.02 13.07 -19.28 -0.25 -13.27 16 10 N -0.61 -13.36 5.18 -13.88 -0.07 -13.43 16 11 C 0.03 0.83 6.52 -83.17 -0.54 0.29 16 12 C -0.11 -2.58 8.76 -39.44 -0.35 -2.93 16 13 C -0.22 -5.08 10.04 -39.36 -0.40 -5.47 16 14 C -0.12 -2.76 9.96 -39.99 -0.40 -3.16 16 15 C -0.14 -3.62 8.59 -39.28 -0.34 -3.95 16 16 C 0.10 2.72 5.50 -106.65 -0.59 2.14 16 17 C -0.48 -12.00 8.23 -37.87 -0.31 -12.31 16 18 H 0.08 1.84 7.30 -52.48 -0.38 1.46 16 19 C 0.08 1.93 5.15 -17.33 -0.09 1.84 16 20 N -0.80 -19.99 11.31 55.55 0.63 -19.37 16 21 Si 0.91 18.09 29.58 -169.99 -5.03 13.06 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 32 H 0.06 0.75 7.82 -51.93 -0.41 0.34 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.41 8.33 7.61 -40.82 -0.31 8.02 16 36 H 0.13 3.05 5.48 -52.48 -0.29 2.76 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.09 1.87 8.06 -52.48 -0.42 1.44 16 39 H 0.12 2.99 6.62 -52.48 -0.35 2.64 16 40 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -28.28 330.50 -7.98 -36.26 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.78 Total: 11.35 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -2.06 Total: -12.79 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.56 Total: -32.80 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.65 Total: -20.06 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.28 -7.98 -36.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194807822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.964 kcal (2) G-P(sol) polarization free energy of solvation -28.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds