Wall clock time and date at job start Mon Mar 30 2020 02:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46904 * 2 1 4 4 H 1.09002 * 109.47369 * 54.99851 * 3 2 1 5 5 C 1.53007 * 109.46949 * 294.99730 * 3 2 1 6 6 C 1.53005 * 109.47194 * 175.00165 * 3 2 1 7 7 O 1.45194 * 109.46994 * 184.99794 * 6 3 2 8 8 C 1.34647 * 116.99823 * 179.97438 * 7 6 3 9 9 O 1.21507 * 120.00008 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00187 * 180.02562 * 8 7 6 11 11 C 1.39144 * 120.00056 * 185.25976 * 10 8 7 12 12 C 1.38640 * 120.28472 * 20.59461 * 11 10 8 13 13 C 1.38225 * 120.03486 * 179.97438 * 12 11 10 14 14 C 1.38858 * 120.61279 * 359.97438 * 13 12 11 15 15 C 1.36461 * 120.57957 * 0.02562 * 14 13 12 16 16 C 1.40735 * 119.94179 * 359.97438 * 15 14 13 17 17 C 1.41082 * 120.29807 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99711 * 212.01141 * 17 16 15 19 19 C 1.39944 * 119.99829 * 32.01683 * 17 16 15 20 20 N 1.30857 * 120.00280 * 14.83437 * 19 17 16 21 21 Si 1.86801 * 119.99609 * 194.83179 * 19 17 16 22 22 H 1.48500 * 109.47216 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47000 * 120.00368 * 21 19 17 24 24 H 1.48501 * 109.47222 * 240.00051 * 21 19 17 25 25 H 1.08998 * 109.46905 * 60.00494 * 1 2 3 26 26 H 1.09001 * 109.47149 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47082 * 300.00156 * 1 2 3 28 28 H 1.09001 * 109.46795 * 240.00199 * 2 1 3 29 29 H 1.09000 * 109.47442 * 120.00031 * 2 1 3 30 30 H 1.08995 * 109.47452 * 299.99970 * 5 3 2 31 31 H 1.09003 * 109.46782 * 60.00420 * 5 3 2 32 32 H 1.09001 * 109.46811 * 180.02562 * 5 3 2 33 33 H 1.09003 * 109.47201 * 64.99769 * 6 3 2 34 34 H 1.08995 * 109.46955 * 305.00166 * 6 3 2 35 35 H 0.96999 * 119.99848 * 5.25553 * 10 8 7 36 36 H 1.08003 * 119.98115 * 0.25261 * 12 11 10 37 37 H 1.07997 * 119.69217 * 179.97438 * 13 12 11 38 38 H 1.08006 * 119.71342 * 179.97438 * 14 13 12 39 39 H 1.08006 * 120.03133 * 180.02562 * 15 14 13 40 40 H 0.96997 * 119.99627 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 8 4.0389 2.8116 0.2446 8 6 5.3682 2.9893 0.3650 9 8 6.1116 2.0282 0.3710 10 7 5.8741 4.2333 0.4800 11 6 7.2522 4.4253 0.4942 12 6 8.0985 3.4560 -0.0217 13 6 9.4666 3.6523 -0.0054 14 6 10.0077 4.8163 0.5243 15 6 9.1979 5.7868 1.0386 16 6 7.8015 5.6118 1.0341 17 6 6.9573 6.6100 1.5644 18 1 6.0256 6.3346 2.0362 19 6 7.3271 7.9570 1.4789 20 7 8.2884 8.3215 0.6693 21 14 6.4485 9.2346 2.5206 22 1 5.4086 8.5699 3.3465 23 1 7.4293 9.9088 3.4088 24 1 5.8094 10.2409 1.6350 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0698 1.5875 -2.1492 31 1 0.5489 2.1252 -1.3970 32 1 1.9989 3.1540 -1.3076 33 1 4.0030 0.9836 -0.7597 34 1 3.8571 0.8801 1.0112 35 1 5.2775 4.9947 0.5527 36 1 7.6884 2.5489 -0.4406 37 1 10.1208 2.8934 -0.4083 38 1 11.0789 4.9545 0.5300 39 1 9.6282 6.6890 1.4479 40 1 8.5444 9.2552 0.6099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194807822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:17 Heat of formation + Delta-G solvation = -93.844974 kcal Electronic energy + Delta-G solvation = -21118.200973 eV Core-core repulsion = 17896.513208 eV Total energy + Delta-G solvation = -3221.687765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.80829 -39.76180 -38.20087 -36.64057 -35.67521 -35.48167 -31.58034 -31.16162 -30.19109 -27.93871 -27.09049 -24.78534 -23.56092 -22.83471 -21.66872 -20.99524 -19.73133 -19.09268 -18.17931 -17.78067 -17.28918 -16.69449 -16.12830 -15.91649 -15.67597 -14.93578 -14.80496 -14.55119 -14.45906 -14.26411 -13.77154 -13.57275 -13.27314 -13.06907 -12.89432 -12.87424 -12.74416 -12.53193 -12.16194 -12.14236 -11.86418 -11.67635 -11.59910 -11.55854 -11.42365 -11.31218 -11.05923 -10.83355 -9.32223 -8.83673 -8.53409 -6.32910 0.81251 1.01653 1.22186 1.42900 1.51570 1.56427 1.88211 2.23163 2.77167 3.27146 3.68926 3.78713 3.82603 4.03702 4.29892 4.33152 4.47901 4.54990 4.59754 4.64644 4.71908 4.74857 4.81441 4.99986 5.05018 5.07765 5.14410 5.17721 5.19740 5.25046 5.31829 5.41188 5.47568 5.51959 5.76117 5.79075 6.06046 6.16333 6.22534 6.58702 6.66381 6.91141 6.96693 7.37596 8.37801 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018266 B = 0.004312 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.556591 B = 6491.554407 C = 7771.017621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.085 4.085 4 H 0.082 0.918 5 C -0.148 4.148 6 C 0.084 3.916 7 O -0.367 6.367 8 C 0.637 3.363 9 O -0.592 6.592 10 N -0.614 5.614 11 C 0.025 3.975 12 C -0.120 4.120 13 C -0.218 4.218 14 C -0.119 4.119 15 C -0.162 4.162 16 C 0.078 3.922 17 C -0.499 4.499 18 H 0.080 0.920 19 C 0.042 3.958 20 N -0.827 5.827 21 Si 0.980 3.020 22 H -0.258 1.258 23 H -0.268 1.268 24 H -0.267 1.267 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.417 0.583 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.103 0.897 40 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.889 -8.298 -1.165 15.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.104 4.104 4 H 0.100 0.900 5 C -0.205 4.205 6 C 0.009 3.991 7 O -0.281 6.281 8 C 0.392 3.608 9 O -0.484 6.484 10 N -0.263 5.263 11 C -0.069 4.069 12 C -0.140 4.140 13 C -0.238 4.238 14 C -0.138 4.138 15 C -0.182 4.182 16 C 0.074 3.926 17 C -0.529 4.529 18 H 0.098 0.902 19 C -0.173 4.173 20 N -0.453 5.453 21 Si 0.801 3.199 22 H -0.182 1.182 23 H -0.193 1.193 24 H -0.192 1.192 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.255 0.745 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.121 0.879 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.541 -8.621 -1.288 15.273 hybrid contribution -0.092 0.963 0.357 1.031 sum -12.633 -7.658 -0.931 14.803 Atomic orbital electron populations 1.21786 0.94046 1.02455 1.02404 1.21495 0.97278 0.93558 1.02891 1.21263 0.90203 0.98654 1.00259 0.89954 1.21869 1.02378 1.00188 0.96039 1.23344 0.95746 0.77710 1.02252 1.86229 1.21059 1.34699 1.86086 1.18180 0.81568 0.84012 0.77080 1.90841 1.59351 1.40846 1.57411 1.41495 1.06392 1.06097 1.72299 1.17815 0.80460 1.00001 1.08590 1.21193 0.93778 0.98858 1.00157 1.20674 0.94128 0.99249 1.09708 1.20750 0.99096 0.94224 0.99696 1.20799 0.92941 0.99126 1.05383 1.17604 0.93149 0.91131 0.90680 1.19518 1.06446 0.91276 1.35652 0.90170 1.26624 0.95153 1.01243 0.94326 1.69869 1.26173 1.19870 1.29402 0.85188 0.78874 0.77292 0.78544 1.18154 1.19330 1.19202 0.91912 0.91619 0.92512 0.91129 0.91375 0.92504 0.90410 0.93540 0.91487 0.91485 0.74547 0.85728 0.86288 0.86547 0.87865 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.67 71.98 0.70 -1.09 16 2 C -0.11 -1.70 5.40 30.59 0.17 -1.53 16 3 C -0.09 -1.66 2.63 -10.79 -0.03 -1.68 16 4 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 5 C -0.15 -2.76 8.85 71.98 0.64 -2.13 16 6 C 0.08 2.23 4.85 71.98 0.35 2.58 16 7 O -0.37 -12.44 9.81 -55.57 -0.55 -12.99 16 8 C 0.64 26.48 8.59 129.79 1.11 27.60 16 9 O -0.59 -27.13 13.07 19.82 0.26 -26.88 16 10 N -0.61 -27.11 5.18 -428.22 -2.22 -29.33 16 11 C 0.03 1.26 6.52 38.87 0.25 1.51 16 12 C -0.12 -5.87 8.76 22.36 0.20 -5.67 16 13 C -0.22 -10.02 10.04 22.42 0.22 -9.80 16 14 C -0.12 -5.56 9.96 22.00 0.22 -5.34 16 15 C -0.16 -8.43 8.59 22.47 0.19 -8.24 16 16 C 0.08 4.14 5.50 -21.18 -0.12 4.02 16 17 C -0.50 -25.42 8.23 23.38 0.19 -25.23 16 18 H 0.08 3.89 7.30 -2.91 -0.02 3.87 16 19 C 0.04 2.01 5.15 85.25 0.44 2.45 16 20 N -0.83 -41.82 11.31 21.83 0.25 -41.57 16 21 Si 0.98 36.74 29.58 68.60 2.03 38.77 16 22 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 23 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 24 H -0.27 -9.63 7.11 99.48 0.71 -8.93 16 25 H 0.06 0.70 6.56 -2.39 -0.02 0.69 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.15 6.57 -2.39 -0.02 1.13 16 32 H 0.05 1.03 7.82 -2.39 -0.02 1.02 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.42 17.11 7.61 -92.71 -0.71 16.41 16 36 H 0.13 6.09 5.48 -2.91 -0.02 6.08 16 37 H 0.12 4.73 8.06 -2.91 -0.02 4.70 16 38 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 39 H 0.10 5.50 6.62 -2.91 -0.02 5.48 16 40 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 Total: -1.00 -60.15 330.50 4.64 -55.50 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: 0.34 Total: 39.04 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 4.53 Total: -22.56 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -1.97 Total: -70.89 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -0.29 Total: -39.86 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Total: -60.15 4.64 -55.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194807822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.342 kcal (2) G-P(sol) polarization free energy of solvation -60.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds